NO02G03500, NO02G03500 (gene) Nannochloropsis oceanica

Overview
NameNO02G03500
Unique NameNO02G03500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1435
Alignment locationchr2:937489..938923 -

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Properties
Property NameValue
DescriptionPrefoldin subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:937489..938923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR027235PFD2
IPR002777PFD_beta-like
Homology
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: EWM30345.1 (prefoldin subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 186.0 bits (471), Expect = 8.300e-44
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0 
Query:    1 MDAGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQAAQ 126
            M+   + E +DPS+IIQ FQ LQGECQQM TKL ELE E SEHELVIQQLTPL+PSRKAYRL+GGVLMERTV EVLP+L E ASKLRT +PQLD AL KKQKQTREWR+KYNIRAQS KEI+A Q
Sbjct:    1 MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQ 125
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: GAQ85407.1 (prefoldin 2 [Klebsormidium nitens])

HSP 1 Score: 99.8 bits (247), Expect = 7.800e-18
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:    3 AGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQAAQ 126
            +  ++ L+   AI++ +  LQ E Q +  KL ELE E  EH +V+  L PL+PSRK YRLVG VL+ERTV EVLP +      L  IV  L E   KK+K+  E++ KY IR ++ KE++ AQ
Sbjct:   22 SNESVGLNSEEAIVRRYMELQNELQNLFAKLQELESEKVEHNMVVSTLDPLEPSRKCYRLVGSVLVERTVKEVLPAVTANRDNLAQIVKTLSEQFEKKKKELGEFQTKYKIRYKNEKEVRRAQ 144
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_012069635.1 (probable prefoldin subunit 2 [Jatropha curcas] >KDP40179.1 hypothetical protein JCGZ_02177 [Jatropha curcas])

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-17
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:    4 GSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPK 120
            G   E  +  AI+  +  L+ E  Q+ +K+ ELE E SEH LVI  + PLDPSR+ YR++GGVL+ERT+ EVLP ++     +  ++ +L+EAL KK+K+  E+  KY IR + P+
Sbjct:    7 GDRKEPINEQAIVNAYTALRSELNQIYSKITELEMEVSEHSLVINAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVITRLNEALEKKKKEIVEFESKYKIRIRKPE 122
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: PSR92733.1 (Prefoldin subunit like [Actinidia chinensis var. chinensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-17
Identity = 49/119 (41.18%), Postives = 78/119 (65.55%), Query Frame = 0 
Query:    4 GSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQ 123
            G ++E  +  A+  ++  ++ E  Q+ +K+ ELE E SEH LVI  + PLDPSR+ YR++GGVL+ERT+ EVLP ++     L  +V +L+EAL KK+K+  ++  KY IR +   E++
Sbjct:    7 GESMEPINEQAVANIYGAMKSEINQIYSKITELEMEVSEHSLVINAIKPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVSRLNEALEKKKKEVADFEAKYKIRIRKADEVK 125
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: PSS33865.1 (Prefoldin subunit like [Actinidia chinensis var. chinensis])

HSP 1 Score: 98.2 bits (243), Expect = 2.300e-17
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 0 
Query:    4 GSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQ 123
            G   E  +   +  ++  ++ E  Q+ +KL ELE E SEH LVI  +TP+DPSR+ YR++GGVL+ERT+ EVLP ++     L  +V +L+EAL KK+K+  ++  KY IR +   E++
Sbjct:    7 GQGKEPINEQVVANIYGAMRSEINQIHSKLTELEMEVSEHSLVINTITPIDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVSRLNEALEKKKKEVADFEAKYKIRMRKADEVK 125
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_007244592.1 (prefoldin subunit 2-like [Astyanax mexicanus])

HSP 1 Score: 97.8 bits (242), Expect = 3.000e-17
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   15 IIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIR 115
            ++  FQRL+ E + MATK  ELE E SEH LVI  L  +DPSRK YRL+GGVL+ERTV+EVLP L+    ++  IV  L   +  K K+  E+RE+YNIR
Sbjct:   32 VVAGFQRLRQEQRSMATKAAELEMEISEHSLVIDALKEVDPSRKCYRLIGGVLVERTVSEVLPALENNKGQISKIVDSLGSQMQTKGKELNEYRERYNIR 131
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_010931723.1 (PREDICTED: probable prefoldin subunit 2 [Elaeis guineensis])

HSP 1 Score: 97.8 bits (242), Expect = 3.000e-17
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:    3 AGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIR 115
            +G N EL +  AI  ++  ++ E  Q+ +K+ ELE E SEH LVI  + PLDPSR+ YR+VGGVL+ERT+ EVLP ++   + L  ++ +L+EAL KK+K+  E+  K+ I+
Sbjct:    6 SGDNRELVNEQAIANMYAAMRSEMNQLYSKITELEMEISEHSLVIGAIQPLDPSRRCYRMVGGVLVERTIKEVLPAVQRNKAGLEEVIARLNEALEKKKKEIAEFELKHKIK 117
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_021665730.1 (probable prefoldin subunit 2 [Hevea brasiliensis] >XP_021665731.1 probable prefoldin subunit 2 [Hevea brasiliensis])

HSP 1 Score: 97.4 bits (241), Expect = 3.900e-17
Identity = 49/120 (40.83%), Postives = 78/120 (65.00%), Query Frame = 0 
Query:    4 GSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPK-EIQ 123
            G   E  +  A++  +  ++ E  Q+ +K+ ELE E SEH LVI  + PLDPSR+ YR++GGVL+ERT+ EVLP ++     +  ++ +L+EAL KK+K+  E+  KY I+ + P+ E+Q
Sbjct:    7 GDRKEPINEQAVVNAYTAMRSELNQIYSKITELEMEVSEHSLVINAIQPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVIARLNEALEKKKKEIAEFETKYKIKIRKPENEVQ 126
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_004240999.1 (PREDICTED: probable prefoldin subunit 2 [Solanum lycopersicum] >XP_015077067.1 PREDICTED: probable prefoldin subunit 2 [Solanum pennellii])

HSP 1 Score: 97.1 bits (240), Expect = 5.100e-17
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 0 
Query:   14 AIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQ 123
            A+  V+  ++ E  Q+ +K+ ELE E SEH LVI  + PLDP+R+ YR++GGVL+ERT+ EVLP ++     +  ++ +L+EAL KK+K+  ++  KY IR + P E++
Sbjct:   13 AVANVYSSMRSEITQIYSKITELEMEVSEHSLVINAIQPLDPARRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVIARLNEALEKKKKEISDFEAKYKIRIRKPDEVK 121
[Close]
BLAST of NO02G03500 vs. NCBI_GenBank
Match: XP_016555607.1 (PREDICTED: probable prefoldin subunit 2 [Capsicum annuum] >XP_016555608.1 PREDICTED: probable prefoldin subunit 2 [Capsicum annuum] >XP_016555609.1 PREDICTED: probable prefoldin subunit 2 [Capsicum annuum] >XP_016555610.1 PREDICTED: probable prefoldin subunit 2 [Capsicum annuum] >XP_016555611.1 PREDICTED: probable prefoldin subunit 2 [Capsicum annuum] >PHT44348.1 putative prefoldin subunit 2 [Capsicum baccatum])

HSP 1 Score: 97.1 bits (240), Expect = 5.100e-17
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 0 
Query:   14 AIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQ 123
            AI  ++  ++ E  Q+ +K+ ELE E SEH LVI  + PLDP+R+ YR++GGVL+ERT+ EVLP ++     +  ++ +L+EAL KK+K+  ++  KY IR + P E++
Sbjct:   13 AIANIYSAMRSEITQIYSKITELEMEVSEHSLVINAIQPLDPARRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVIARLNEALEKKKKEISDFEAKYKIRIRKPDEVK 121
The following BLAST results are available for this feature:
BLAST of NO02G03500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30345.18.300e-4476.80prefoldin subunit 2 [Nannochloropsis gaditana][more]
GAQ85407.17.800e-1844.72prefoldin 2 [Klebsormidium nitens][more]
XP_012069635.11.000e-1743.10probable prefoldin subunit 2 [Jatropha curcas] >KD... [more]
PSR92733.11.000e-1741.18Prefoldin subunit like [Actinidia chinensis var. c... [more]
PSS33865.12.300e-1741.18Prefoldin subunit like [Actinidia chinensis var. c... [more]
XP_007244592.13.000e-1753.00prefoldin subunit 2-like [Astyanax mexicanus][more]
XP_010931723.13.000e-1744.64PREDICTED: probable prefoldin subunit 2 [Elaeis gu... [more]
XP_021665730.13.900e-1740.83probable prefoldin subunit 2 [Hevea brasiliensis] ... [more]
XP_004240999.15.100e-1742.20PREDICTED: probable prefoldin subunit 2 [Solanum l... [more]
XP_016555607.15.100e-1742.20PREDICTED: probable prefoldin subunit 2 [Capsicum ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03500.2NO02G03500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G03500.1NO02G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636217gene_938Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g131gene352Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03500.2NO02G03500.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G03500.1NO02G03500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03500 ID=NO02G03500|Name=NO02G03500|organism=Nannochloropsis oceanica|type=gene|length=1435bp
ATGGGCGCTATGGCAACGAAATCTACGGATGGTTATGTAGGTGCACACAG
GGGTGAGTGCGAAGGTGGTATAAGGAAGAGCATACTTCGTAATTTCGAGT
CAGAATTATTGCGCCCCGCTCGCCTGGCCCCGCTTCAAGCGACGACCTGC
CGCTTGGTGAGGCTAGCTTCCTTTCGTTCTGAGAGTCAGAGTGATATTTT
ATTTTGCGTCTAAGTCGAGATGCTCAGAACCAACTCAGGTGCTGCGACGT
GCAAATTGGCTGCATGGGGGTGCTGGAAACCTGTAGAGTTTTTTTCCAAC
AAAGCTTCTGAAAGGCGAAGAAGGGGATAGACGATAAGATGTATATATTG
CATATTTCACGGTCCACGTCTCTTCTCCCTCCATGCCACACGCCATACAA
AATTTCACAGGAACGGAAAGTCATGGATGCCGGCAGCAATTTAGAGCTCT
CTGATCCTAGTGCCATAATCCAGGTACTTTTTTAATTGTGCTTGGAACTG
TTGAGTGGAGTGCAAATGCTCGAAAACCCCTTGTCCCCATCGCCCTGCCC
GGTACCCCTCATACTCCAACCATCCATGCCAAGCACAGGTGTTCCAGAGA
CTTCAAGGAGAATGTCAGCAGgtacgttattgtgtaaataagcgggctag
ggaggctgatgaatgacaatcttggttagctatgatggtttggcttcgag
caccctggggcctggagaaagagaattttcaggatcaatccatttataca
gcgaaaccctatgtttttctcaatctcttagtggaatgaacgtgtaccca
taaatggaaacatagatgtcaatcagtgaccataaacttagaaaggacaa
acattagccaaaaaagtcatgtgttgggccctctcccatacttgatggtt
ttgtgctacagcggaaaatgtgccggaaggacaagttgctgcccgaacct
tgctcctctttgtgactgcttgactgatcaatctactcttcaacctactc
cctccgttgttatgatctatgacaaatgctcacacatccatctctcttcc
gacctgtacacaaacagATGGCGACGAAGCTCCACGAGCTGGAGCAAGAG
TGCAGTGAGCACGAGCTGGTCATCCAACAGCTAACGCCGCTGGACCCGTC
CCGCAAGGCGTACAGATTGGTCGGGGGGGTCTTAATGGAGCGAACGGTTG
CCGAGGTCTTGCCTATTCTAAAAGAAACAGCGTCAAAGCTCAGGACGATT
GTCCCTCAACTGGACGAGGCCTTGGTGAAGAAGCAGAAGCAAACGAGGGA
ATGGCGGGAAAAGTACAACATTCGAGCACAGAGTCCCAAGGAGATTCAGG
CAGCGCAACAGAAGGCCGCGGCTGCTGCAGGTGCTGGTGCGGATGGAGGG
GAGGGGTCGGGAGGAGGGGTGTTGGCATAAAGGTA
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protein sequence of NO02G03500.2

>NO02G03500.2-protein ID=NO02G03500.2-protein|Name=NO02G03500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPI
LKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQAAQQKA
AAAAGAGADGGEGSGGGVLA*
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protein sequence of NO02G03500.1

>NO02G03500.1-protein ID=NO02G03500.1-protein|Name=NO02G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MDAGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQL
TPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKK
QKQTREWREKYNIRAQSPKEIQAAQQKAAAAAGAGADGGEGSGGGVLA*
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Synonyms
Publications