NO02G03500.1, NO02G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03500.1
Unique NameNO02G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr2:937489..938517 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:937489..938517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03500.1 vs.
Match: EWM30345.1 (prefoldin subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 4.000e-46
Identity = 109/148 (73.65%), Postives = 121/148 (81.76%), Query Frame = 0 
Query:    1 MDAGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQLTPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKKQKQTREWREKYNIRAQSPKEIQAAQQKAAAAAGAGADGGEGSGGGVLA 149
            M+   + E +DPS+IIQ FQ LQGECQQM TKL ELE E SEHELVIQQLTPL+PSRKAYRL+GGVLMERTV EVLP+L E ASKLRT +PQLD AL KKQKQTREWR+KYNIRAQS KEI+A QQK+AA A  GA   + S GGVLA
Sbjct:    1 MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGAT--DLSAGGVLA 146
The following BLAST results are available for this feature:
BLAST of NO02G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30345.14.000e-4673.65prefoldin subunit 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03500NO02G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03500.1NO02G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03500.1.cds1NO02G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03500.1.cds2NO02G03500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03500.1.cds3NO02G03500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03500.1 ID=NO02G03500.1|Name=NO02G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ACAGGAACGGAAAGTCATGGATGCCGGCAGCAATTTAGAGCTCTCTGATC
CTAGTGCCATAATCCAGGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAG
ATGGCGACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCT
GGTCATCCAACAGCTAACGCCGCTGGACCCGTCCCGCAAGGCGTACAGAT
TGGTCGGGGGGGTCTTAATGGAGCGAACGGTTGCCGAGGTCTTGCCTATT
CTAAAAGAAACAGCGTCAAAGCTCAGGACGATTGTCCCTCAACTGGACGA
GGCCTTGGTGAAGAAGCAGAAGCAAACGAGGGAATGGCGGGAAAAGTACA
ACATTCGAGCACAGAGTCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCC
GCGGCTGCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGG
GGTGTTGGCATAAAGGTA
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protein sequence of NO02G03500.1

>NO02G03500.1-protein ID=NO02G03500.1-protein|Name=NO02G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MDAGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQL
TPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKK
QKQTREWREKYNIRAQSPKEIQAAQQKAAAAAGAGADGGEGSGGGVLA*
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mRNA from alignment at chr2:937489..938517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03500.1 ID=NO02G03500.1|Name=NO02G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at chr2:937489..938517- (Nannochloropsis oceanica)
ACAGGAACGGAAAGTCATGGATGCCGGCAGCAATTTAGAGCTCTCTGATC
CTAGTGCCATAATCCAGGTACTTTTTTAATTGTGCTTGGAACTGTTGAGT
GGAGTGCAAATGCTCGAAAACCCCTTGTCCCCATCGCCCTGCCCGGTACC
CCTCATACTCCAACCATCCATGCCAAGCACAGGTGTTCCAGAGACTTCAA
GGAGAATGTCAGCAGGTACGTTATTGTGTAAATAAGCGGGCTAGGGAGGC
TGATGAATGACAATCTTGGTTAGCTATGATGGTTTGGCTTCGAGCACCCT
GGGGCCTGGAGAAAGAGAATTTTCAGGATCAATCCATTTATACAGCGAAA
CCCTATGTTTTTCTCAATCTCTTAGTGGAATGAACGTGTACCCATAAATG
GAAACATAGATGTCAATCAGTGACCATAAACTTAGAAAGGACAAACATTA
GCCAAAAAAGTCATGTGTTGGGCCCTCTCCCATACTTGATGGTTTTGTGC
TACAGCGGAAAATGTGCCGGAAGGACAAGTTGCTGCCCGAACCTTGCTCC
TCTTTGTGACTGCTTGACTGATCAATCTACTCTTCAACCTACTCCCTCCG
TTGTTATGATCTATGACAAATGCTCACACATCCATCTCTCTTCCGACCTG
TACACAAACAGATGGCGACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGT
GAGCACGAGCTGGTCATCCAACAGCTAACGCCGCTGGACCCGTCCCGCAA
GGCGTACAGATTGGTCGGGGGGGTCTTAATGGAGCGAACGGTTGCCGAGG
TCTTGCCTATTCTAAAAGAAACAGCGTCAAAGCTCAGGACGATTGTCCCT
CAACTGGACGAGGCCTTGGTGAAGAAGCAGAAGCAAACGAGGGAATGGCG
GGAAAAGTACAACATTCGAGCACAGAGTCCCAAGGAGATTCAGGCAGCGC
AACAGAAGGCCGCGGCTGCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGG
TCGGGAGGAGGGGTGTTGGCATAAAGGTA
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Coding sequence (CDS) from alignment at chr2:937489..938517-

>NO02G03500.1 ID=NO02G03500.1|Name=NO02G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr2:937489..938517- (Nannochloropsis oceanica)
ATGGATGCCGGCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCA
GGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGATGGCGACGAAGCTCC
ACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCTGGTCATCCAACAGCTA
ACGCCGCTGGACCCGTCCCGCAAGGCGTACAGATTGGTCGGGGGGGTCTT
AATGGAGCGAACGGTTGCCGAGGTCTTGCCTATTCTAAAAGAAACAGCGT
CAAAGCTCAGGACGATTGTCCCTCAACTGGACGAGGCCTTGGTGAAGAAG
CAGAAGCAAACGAGGGAATGGCGGGAAAAGTACAACATTCGAGCACAGAG
TCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCCGCGGCTGCTGCAGGTG
CTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGGGGTGTTGGCATAA
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Synonyms
Publications