NO02G03290, NO02G03290 (gene) Nannochloropsis oceanica

Overview
NameNO02G03290
Unique NameNO02G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length772
Alignment locationchr2:884954..885725 -

Link to JBrowse

Properties
Property NameValue
DescriptionAlkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:884954..885725 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0098869cellular oxidant detoxification
GO:0055114oxidation-reduction process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0016209antioxidant activity
GO:0016491oxidoreductase activity
GO:0016491oxidoreductase activity
GO:0016209antioxidant activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR000866AhpC/TSA
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: OJV24166.1 (peroxiredoxin [Bacteroidetes bacterium 37-13])

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-17
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:   48 GDK-EEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            GDK  +F+ LN++GETV+LKDFKGK V +YFY KD+TP       +    + +++K G  +L +  DSV+SHKKF+EK +LPFTL+SD  KE+   +
Sbjct:    5 GDKAPDFSALNQDGETVSLKDFKGKKVILYFYPKDNTPGCTKQACSLRDGYSQLKKAGFEILGVSVDSVKSHKKFEEKFELPFTLISDETKEIVEKY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_076712549.1 (thioredoxin-dependent thiol peroxidase [Desulfurobacterium indicum] >OMH40939.1 peroxiredoxin [Desulfurobacterium indicum])

HSP 1 Score: 97.8 bits (242), Expect = 3.300e-17
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            +F L N+EG+ V LKDFKGK + +YFY KD+TP        FT+   E EK    ++ + PDSVESHKKFKEK  L  TLLSD +KE+ +A+
Sbjct:   10 DFCLKNDEGKEVCLKDFKGKWIVLYFYPKDNTPGCTKEAEDFTEKLKEFEKLNAVVIGVSPDSVESHKKFKEKKNLKVTLLSDPEKEIIKAY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_013537349.1 (thioredoxin-dependent thiol peroxidase [Thermovibrio ammonificans] >ADU96563.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Thermovibrio ammonificans HB-1])

HSP 1 Score: 97.4 bits (241), Expect = 4.400e-17
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0 
Query:   47 GGDKEEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            G +  +F L ++ G  V LK+ +GK V +YFY KD+TP       +FT++ PE EK G  +L + PDSVESHKKFKEK  L  TLLSD +KEV  A+
Sbjct:    5 GTEAPDFCLPSDSGTQVCLKELRGKWVVLYFYPKDNTPGCTKEAESFTQLLPEFEKEGAVVLGVSPDSVESHKKFKEKKGLKVTLLSDPEKEVISAY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: PKM55954.1 (thioredoxin-dependent thiol peroxidase [Firmicutes bacterium HGW-Firmicutes-5])

HSP 1 Score: 97.1 bits (240), Expect = 5.700e-17
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAFHNLRVRSI 152
            EF L N++G+ V+L D++GK V +YFY KDDTP   S    FT+++P+++++G  ++ I  DSV+SHKKF EK  L FTLL+D++ +V  A+   + +S+
Sbjct:   10 EFTLPNQDGKEVSLADYRGKKVILYFYPKDDTPGCTSQACGFTQLYPDIKEKGAEIIGISKDSVKSHKKFAEKYNLTFTLLADTETKVVEAYDVWKEKSM 109
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_025487392.1 (thioredoxin-dependent thiol peroxidase [Eisenbergiella massiliensis])

HSP 1 Score: 96.3 bits (238), Expect = 9.700e-17
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            EF L N++GE V+LKDF+GK V +YFY KD+TP   +   +F   +P+++++G  +L +  DSV SHKKF EK  LPFTLL+D + EV +A+
Sbjct:   10 EFTLKNQDGEEVSLKDFRGKKVILYFYPKDNTPGCTTQACSFGDRYPQIQEKGAVVLGVSKDSVASHKKFAEKYHLPFTLLADPELEVIQAY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: KXU52265.1 (antioxidant, AhpC/TSA family [Candidatus Stoquefichus sp. KLE1796])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            +F LLN+ GE V+LKD++GK V +YFY KD+TP        F + +P  +++G  +L +  DSV+SHKKF+EK  LPFT+LSD + E  +A+
Sbjct:   13 DFTLLNQNGEEVSLKDYRGKKVILYFYPKDNTPGCTKQACGFAENYPHFQEKGAVVLGVSKDSVKSHKKFEEKYNLPFTILSDPQLEAIQAY 104
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_066443880.1 (thioredoxin-dependent thiol peroxidase [Candidatus Stoquefichus sp. KLE1796])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            +F LLN+ GE V+LKD++GK V +YFY KD+TP        F + +P  +++G  +L +  DSV+SHKKF+EK  LPFT+LSD + E  +A+
Sbjct:   10 DFTLLNQNGEEVSLKDYRGKKVILYFYPKDNTPGCTKQACGFAENYPHFQEKGAVVLGVSKDSVKSHKKFEEKYNLPFTILSDPQLEAIQAY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_033140558.1 (thioredoxin-dependent thiol peroxidase [Blautia producta] >POP37913.1 thioredoxin-dependent thiol peroxidase [Blautia producta])

HSP 1 Score: 95.1 bits (235), Expect = 2.200e-16
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 0 
Query:   47 GGDKEEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            G    EF LLN++GE  AL DF+GK V +YFY+KD+T         F +++P+  ++G  +L +  D+V SHKKF EK  LPFTLLSD++ +V RA+
Sbjct:    5 GSKAPEFCLLNQDGEETALSDFRGKKVVLYFYSKDNTAGCTKQACNFGELYPQFMEKGAVVLGVSKDTVASHKKFAEKYHLPFTLLSDTELKVIRAY 101
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: EWG06527.1 (alkyl hydroperoxide reductase [Sulfolobales archaeon AZ1] >KJR78233.1 alkyl hydroperoxide reductase [Sulfolobales archaeon AZ1])

HSP 1 Score: 94.7 bits (234), Expect = 2.800e-16
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0 
Query:   46 KGGDK-EEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            K GDK  +F  LNE+GE+VAL  F+GK V +YFY KDDTP   +  ++F + + E+ K G+ +L +  DS ESHK+FKEK  LPFTLLSD + ++   +
Sbjct:    4 KVGDKAPDFTALNEKGESVALSSFRGKWVVLYFYPKDDTPGCRAEALSFKENWDELMKAGVVMLGVSGDSPESHKRFKEKYGLPFTLLSDPEDKIREMY 102
[Close]
BLAST of NO02G03290 vs. NCBI_GenBank
Match: WP_021633760.1 (thioredoxin-dependent thiol peroxidase [Clostridium sp. KLE 1755] >ERI70998.1 antioxidant, AhpC/TSA family [Clostridium sp. KLE 1755])

HSP 1 Score: 94.4 bits (233), Expect = 3.700e-16
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 0 
Query:   52 EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            EF L N++GE V+LKDF+GK V +YFY KD+TP   +   +F   +P+++++G  +L +  DSV SHKKF EK  LPF LL+D + EV +A+
Sbjct:   10 EFTLKNQDGEEVSLKDFRGKKVILYFYPKDNTPGCTTQACSFGDRYPQIQEKGAVVLGVSKDSVASHKKFAEKYHLPFALLADPELEVIQAY 101
The following BLAST results are available for this feature:
BLAST of NO02G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OJV24166.12.000e-1748.45peroxiredoxin [Bacteroidetes bacterium 37-13][more]
WP_076712549.13.300e-1751.09thioredoxin-dependent thiol peroxidase [Desulfurob... [more]
WP_013537349.14.400e-1749.48thioredoxin-dependent thiol peroxidase [Thermovibr... [more]
PKM55954.15.700e-1744.00thioredoxin-dependent thiol peroxidase [Firmicutes... [more]
WP_025487392.19.700e-1748.91thioredoxin-dependent thiol peroxidase [Eisenbergi... [more]
KXU52265.11.300e-1646.74antioxidant, AhpC/TSA family [Candidatus Stoquefic... [more]
WP_066443880.11.300e-1646.74thioredoxin-dependent thiol peroxidase [Candidatus... [more]
WP_033140558.12.200e-1646.39thioredoxin-dependent thiol peroxidase [Blautia pr... [more]
EWG06527.12.800e-1648.48alkyl hydroperoxide reductase [Sulfolobales archae... [more]
WP_021633760.13.700e-1647.83thioredoxin-dependent thiol peroxidase [Clostridiu... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03290.1NO02G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03290.1NO02G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03290 ID=NO02G03290|Name=NO02G03290|organism=Nannochloropsis oceanica|type=gene|length=772bp
ATGAAGAGGGGGCCGTCATTTCGAGGGCAAGGAGGAAGAGGGGGAGAAGG
CCGTGGGGGAAGGGGAACAGCAGGAGCTAGAGGAGGGGGCCTCGGCGGGC
TTACCGACGAAGGGAACGACGGCGAGAGCCAAGGGAAAGGAGGTGACAAA
GAAGgtgaaagagggcaaaggtggccgtagccagacttcaaagaggcgtc
tggggctagaggttggttcacccgcaccagAATTTGCCTTGTTGAATGAA
GAGGGAGAGACAGTGGCGTTGAAGGACTTTAAGGGCAAGCATGTCGCCAT
CTACTTCTATAACAAGGATGATACCCCCGTGGTCATCAGTGGATGCATGG
CCTTCACCAAGATATTTCCTGAGATGGAGAAAAGAGGCATCTCTCTTCTC
TTCATTGGACCAGACAGgtacgagggagaagcatctaattacacaagagg
aaaagacaataacgtgtggtattcgcatttggggtatacgtctcggagct
gtgacgtttccagtcgatgacatttcccttgccaacaatgactattactt
ttggtgcagtcttcaattcgcgcactgtatcccccctctccatccgtgta
cccatacagTGTCGAGTCGCACAAGAAGTTCAAGGAGAAGGCCAAGCTCC
CCTTCACGCTCCTCTCCGACTCGAAGAAGGAAGTTGCCCGAGCGTTTCAC
AACTTACGAGTGCGCTCTATTTGTTCTGCATATATCCGTATGATTTCTCG
GTTTGCTATCAGAATAAGCTAG
back to top

protein sequence of NO02G03290.1

>NO02G03290.1-protein ID=NO02G03290.1-protein|Name=NO02G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MKRGPSFRGQGGRGGEGRGGRGTAGARGGGLGGLTDEGNDGESQGKGGDK
EEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEM
EKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAFHNLRVRS
ICSAYIRMISRFAIRIS*
back to top
Synonyms
Publications