NO02G03290.1, NO02G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03290.1
Unique NameNO02G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr2:884954..885725 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:884954..885725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03290.1 vs.
Match: OJV24166.1 (peroxiredoxin [Bacteroidetes bacterium 37-13])

HSP 1 Score: 98.2 bits (243), Expect = 2.600e-17
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:   48 GDKE-EFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEMEKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAF 144
            GDK  +F+ LN++GETV+LKDFKGK V +YFY KD+TP       +    + +++K G  +L +  DSV+SHKKF+EK +LPFTL+SD  KE+   +
Sbjct:    5 GDKAPDFSALNQDGETVSLKDFKGKKVILYFYPKDNTPGCTKQACSLRDGYSQLKKAGFEILGVSVDSVKSHKKFEEKFELPFTLISDETKEIVEKY 101
The following BLAST results are available for this feature:
BLAST of NO02G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OJV24166.12.600e-1748.45peroxiredoxin [Bacteroidetes bacterium 37-13][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03290NO02G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03290.1NO02G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03290.1.cds1NO02G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03290.1.cds2NO02G03290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03290.1.cds3NO02G03290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03290.1 ID=NO02G03290.1|Name=NO02G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGAAGAGGGGGCCGTCATTTCGAGGGCAAGGAGGAAGAGGGGGAGAAGG
CCGTGGGGGAAGGGGAACAGCAGGAGCTAGAGGAGGGGGCCTCGGCGGGC
TTACCGACGAAGGGAACGACGGCGAGAGCCAAGGGAAAGGAGGTGACAAA
GAAGAATTTGCCTTGTTGAATGAAGAGGGAGAGACAGTGGCGTTGAAGGA
CTTTAAGGGCAAGCATGTCGCCATCTACTTCTATAACAAGGATGATACCC
CCGTGGTCATCAGTGGATGCATGGCCTTCACCAAGATATTTCCTGAGATG
GAGAAAAGAGGCATCTCTCTTCTCTTCATTGGACCAGACAGTGTCGAGTC
GCACAAGAAGTTCAAGGAGAAGGCCAAGCTCCCCTTCACGCTCCTCTCCG
ACTCGAAGAAGGAAGTTGCCCGAGCGTTTCACAACTTACGAGTGCGCTCT
ATTTGTTCTGCATATATCCGTATGATTTCTCGGTTTGCTATCAGAATAAG
CTAG
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protein sequence of NO02G03290.1

>NO02G03290.1-protein ID=NO02G03290.1-protein|Name=NO02G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MKRGPSFRGQGGRGGEGRGGRGTAGARGGGLGGLTDEGNDGESQGKGGDK
EEFALLNEEGETVALKDFKGKHVAIYFYNKDDTPVVISGCMAFTKIFPEM
EKRGISLLFIGPDSVESHKKFKEKAKLPFTLLSDSKKEVARAFHNLRVRS
ICSAYIRMISRFAIRIS*
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mRNA from alignment at chr2:884954..885725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03290.1 ID=NO02G03290.1|Name=NO02G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=772bp|location=Sequence derived from alignment at chr2:884954..885725- (Nannochloropsis oceanica)
ATGAAGAGGGGGCCGTCATTTCGAGGGCAAGGAGGAAGAGGGGGAGAAGG
CCGTGGGGGAAGGGGAACAGCAGGAGCTAGAGGAGGGGGCCTCGGCGGGC
TTACCGACGAAGGGAACGACGGCGAGAGCCAAGGGAAAGGAGGTGACAAA
GAAGGTGAAAGAGGGCAAAGGTGGCCGTAGCCAGACTTCAAAGAGGCGTC
TGGGGCTAGAGGTTGGTTCACCCGCACCAGAATTTGCCTTGTTGAATGAA
GAGGGAGAGACAGTGGCGTTGAAGGACTTTAAGGGCAAGCATGTCGCCAT
CTACTTCTATAACAAGGATGATACCCCCGTGGTCATCAGTGGATGCATGG
CCTTCACCAAGATATTTCCTGAGATGGAGAAAAGAGGCATCTCTCTTCTC
TTCATTGGACCAGACAGGTACGAGGGAGAAGCATCTAATTACACAAGAGG
AAAAGACAATAACGTGTGGTATTCGCATTTGGGGTATACGTCTCGGAGCT
GTGACGTTTCCAGTCGATGACATTTCCCTTGCCAACAATGACTATTACTT
TTGGTGCAGTCTTCAATTCGCGCACTGTATCCCCCCTCTCCATCCGTGTA
CCCATACAGTGTCGAGTCGCACAAGAAGTTCAAGGAGAAGGCCAAGCTCC
CCTTCACGCTCCTCTCCGACTCGAAGAAGGAAGTTGCCCGAGCGTTTCAC
AACTTACGAGTGCGCTCTATTTGTTCTGCATATATCCGTATGATTTCTCG
GTTTGCTATCAGAATAAGCTAG
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Coding sequence (CDS) from alignment at chr2:884954..885725-

>NO02G03290.1 ID=NO02G03290.1|Name=NO02G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr2:884954..885725- (Nannochloropsis oceanica)
ATGAAGAGGGGGCCGTCATTTCGAGGGCAAGGAGGAAGAGGGGGAGAAGG
CCGTGGGGGAAGGGGAACAGCAGGAGCTAGAGGAGGGGGCCTCGGCGGGC
TTACCGACGAAGGGAACGACGGCGAGAGCCAAGGGAAAGGAGGTGACAAA
GAAGAATTTGCCTTGTTGAATGAAGAGGGAGAGACAGTGGCGTTGAAGGA
CTTTAAGGGCAAGCATGTCGCCATCTACTTCTATAACAAGGATGATACCC
CCGTGGTCATCAGTGGATGCATGGCCTTCACCAAGATATTTCCTGAGATG
GAGAAAAGAGGCATCTCTCTTCTCTTCATTGGACCAGACAGTGTCGAGTC
GCACAAGAAGTTCAAGGAGAAGGCCAAGCTCCCCTTCACGCTCCTCTCCG
ACTCGAAGAAGGAAGTTGCCCGAGCGTTTCACAACTTACGAGTGCGCTCT
ATTTGTTCTGCATATATCCGTATGATTTCTCGGTTTGCTATCAGAATAAG
CTAG
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Synonyms
Publications