NO02G02820, NO02G02820 (gene) Nannochloropsis oceanica

Overview
NameNO02G02820
Unique NameNO02G02820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr2:763584..764150 -

Link to JBrowse

Properties
Property NameValue
DescriptionTho complex subunit 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:763584..764150 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02820 vs. NCBI_GenBank
Match: EWM30369.1 (tho complex subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 1.500e-26
Identity = 79/162 (48.77%), Postives = 94/162 (58.02%), Query Frame = 0 
Query:   30 WERAGARYFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVEVMPEYPIRPPRFR-LSPCSSSSSSSELAQESSFRDTFSHVLLEVNAHYEELLMEGWMEGRNNCQLVQQLHKLLFCLNGLNSRGDGRGRGGG--RLRWGKDRRRSTYTFDVHCALLLPR 189
            WERAGARYF+                              V VE+ PEYPIRPPRFR LSP  SS ++S LA  + FR+ F+H+L+EVN HYEELLM G +    +     Q+HKLLFCL    + G     GGG  RLRWGKDRRR  Y+FD HCALL+PR
Sbjct:  620 WERAGARYFD---LALRAQADTKKGGGGRKEKAPEGPELHVAVEITPEYPIRPPRFRLLSP--SSLAASTLAAHAPFREAFAHILVEVNVHYEELLMGGSV---RDWLFPHQVHKLLFCLEASGAVGGSGSSGGGSERLRWGKDRRRG-YSFDTHCALLMPR 772
The following BLAST results are available for this feature:
BLAST of NO02G02820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30369.11.500e-2648.77tho complex subunit 5 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006929NSK006929Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02820.1NO02G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g21gene284Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02820.1NO02G02820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02820 ID=NO02G02820|Name=NO02G02820|organism=Nannochloropsis oceanica|type=gene|length=567bp
ATGGCGTCATCTCGACAGCAGCTGGGAAGTGCTTCGGCAGGGGTAGGAGG
AGGAGGAGGTGGGGGTGGAGGGGGGCCCGAGGACGCATGGGAACGGGCGG
GAGCCCGCTATTTCGAAATTACCTTGACGAAGGAGGGGGAAGGAGGATCA
GGGGGAGGGGGAGGAAGGAGGGACAAGGCAGGGGCAGGAGGGGGGGCGGT
GGTCAAGGTGCTGGTGGAGGTCATGCCTGAGTACCCCATCCGTCCGCCGC
GCTTCCGTCTTTCCCCCTGTTCCTCCTCGTCGTCCTCGTCTGAACTCGCC
CAAGAATCGTCTTTCCGGGATACCTTCTCCCATGTACTTCTCGAAGTGAA
TGCGCACTACGAGGAGCTGCTCATGGAAGGATGGATGGAGGGAAGGAATA
ATTGCCAGCTGGTGCAGCAGTTGCATAAGTTGTTGTTTTGTTTGAATGGG
CTTAATTCCAGGGGGGATGGGAGGGGACGGGGGGGGGGAAGGTTGAGGTG
GGGAAAAGATAGGAGGAGGAGTACGTACACATTTGATGTACATTGTGCCC
TTTTGCTTCCTCGTTAG
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protein sequence of NO02G02820.1

>NO02G02820.1-protein ID=NO02G02820.1-protein|Name=NO02G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MASSRQQLGSASAGVGGGGGGGGGGPEDAWERAGARYFEITLTKEGEGGS
GGGGGRRDKAGAGGGAVVKVLVEVMPEYPIRPPRFRLSPCSSSSSSSELA
QESSFRDTFSHVLLEVNAHYEELLMEGWMEGRNNCQLVQQLHKLLFCLNG
LNSRGDGRGRGGGRLRWGKDRRRSTYTFDVHCALLLPR*
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Synonyms
Publications