NO02G02820.1, NO02G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02820.1
Unique NameNO02G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr2:763584..764150 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:763584..764150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02820.1 vs.
Match: EWM30369.1 (tho complex subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 143.7 bits (361), Expect = 6.000e-31
Identity = 95/198 (47.98%), Postives = 119/198 (60.10%), Query Frame = 0 
Query:   15 VGGGGGGGGGGPED---------------------AWERAGARYFEITLTKEGEGGSGGGGGRRDKAGAGGGAVVKVLVEVMPEYPIRPPRFRL-SPCSSSSSSSELAQESSFRDTFSHVLLEVNAHYEELLMEGWMEGRNNCQLVQQLHKLLFCLNGLNSRGDGRGRGGG--RLRWGKDRRRSTYTFDVHCALLLPR 189
            +GG  G   GGP++                     AWERAGARYF++ L  + +   GGGG R++KA  G    + V VE+ PEYPIRPPRFRL SP  SS ++S LA  + FR+ F+H+L+EVN HYEELLM G +    +     Q+HKLLFCL    + G     GGG  RLRWGKDRRR  Y+FD HCALL+PR
Sbjct:  584 LGGEEGEEAGGPDEVQTRNADREGPATVRSTEGGVAWERAGARYFDLALRAQADTKKGGGG-RKEKAPEG--PELHVAVEITPEYPIRPPRFRLLSP--SSLAASTLAAHAPFREAFAHILVEVNVHYEELLMGGSV---RDWLFPHQVHKLLFCLEASGAVGGSGSSGGGSERLRWGKDRRRG-YSFDTHCALLMPR 772
The following BLAST results are available for this feature:
BLAST of NO02G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30369.16.000e-3147.98tho complex subunit 5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02820NO02G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02820.1NO02G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02820.1.cds1NO02G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02820.1 ID=NO02G02820.1|Name=NO02G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGGCGTCATCTCGACAGCAGCTGGGAAGTGCTTCGGCAGGGGTAGGAGG
AGGAGGAGGTGGGGGTGGAGGGGGGCCCGAGGACGCATGGGAACGGGCGG
GAGCCCGCTATTTCGAAATTACCTTGACGAAGGAGGGGGAAGGAGGATCA
GGGGGAGGGGGAGGAAGGAGGGACAAGGCAGGGGCAGGAGGGGGGGCGGT
GGTCAAGGTGCTGGTGGAGGTCATGCCTGAGTACCCCATCCGTCCGCCGC
GCTTCCGTCTTTCCCCCTGTTCCTCCTCGTCGTCCTCGTCTGAACTCGCC
CAAGAATCGTCTTTCCGGGATACCTTCTCCCATGTACTTCTCGAAGTGAA
TGCGCACTACGAGGAGCTGCTCATGGAAGGATGGATGGAGGGAAGGAATA
ATTGCCAGCTGGTGCAGCAGTTGCATAAGTTGTTGTTTTGTTTGAATGGG
CTTAATTCCAGGGGGGATGGGAGGGGACGGGGGGGGGGAAGGTTGAGGTG
GGGAAAAGATAGGAGGAGGAGTACGTACACATTTGATGTACATTGTGCCC
TTTTGCTTCCTCGTTAG
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protein sequence of NO02G02820.1

>NO02G02820.1-protein ID=NO02G02820.1-protein|Name=NO02G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MASSRQQLGSASAGVGGGGGGGGGGPEDAWERAGARYFEITLTKEGEGGS
GGGGGRRDKAGAGGGAVVKVLVEVMPEYPIRPPRFRLSPCSSSSSSSELA
QESSFRDTFSHVLLEVNAHYEELLMEGWMEGRNNCQLVQQLHKLLFCLNG
LNSRGDGRGRGGGRLRWGKDRRRSTYTFDVHCALLLPR*
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mRNA from alignment at chr2:763584..764150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02820.1 ID=NO02G02820.1|Name=NO02G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp|location=Sequence derived from alignment at chr2:763584..764150- (Nannochloropsis oceanica)
ATGGCGTCATCTCGACAGCAGCTGGGAAGTGCTTCGGCAGGGGTAGGAGG
AGGAGGAGGTGGGGGTGGAGGGGGGCCCGAGGACGCATGGGAACGGGCGG
GAGCCCGCTATTTCGAAATTACCTTGACGAAGGAGGGGGAAGGAGGATCA
GGGGGAGGGGGAGGAAGGAGGGACAAGGCAGGGGCAGGAGGGGGGGCGGT
GGTCAAGGTGCTGGTGGAGGTCATGCCTGAGTACCCCATCCGTCCGCCGC
GCTTCCGTCTTTCCCCCTGTTCCTCCTCGTCGTCCTCGTCTGAACTCGCC
CAAGAATCGTCTTTCCGGGATACCTTCTCCCATGTACTTCTCGAAGTGAA
TGCGCACTACGAGGAGCTGCTCATGGAAGGATGGATGGAGGGAAGGAATA
ATTGCCAGCTGGTGCAGCAGTTGCATAAGTTGTTGTTTTGTTTGAATGGG
CTTAATTCCAGGGGGGATGGGAGGGGACGGGGGGGGGGAAGGTTGAGGTG
GGGAAAAGATAGGAGGAGGAGTACGTACACATTTGATGTACATTGTGCCC
TTTTGCTTCCTCGTTAG
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Coding sequence (CDS) from alignment at chr2:763584..764150-

>NO02G02820.1 ID=NO02G02820.1|Name=NO02G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr2:763584..764150- (Nannochloropsis oceanica)
ATGGCGTCATCTCGACAGCAGCTGGGAAGTGCTTCGGCAGGGGTAGGAGG
AGGAGGAGGTGGGGGTGGAGGGGGGCCCGAGGACGCATGGGAACGGGCGG
GAGCCCGCTATTTCGAAATTACCTTGACGAAGGAGGGGGAAGGAGGATCA
GGGGGAGGGGGAGGAAGGAGGGACAAGGCAGGGGCAGGAGGGGGGGCGGT
GGTCAAGGTGCTGGTGGAGGTCATGCCTGAGTACCCCATCCGTCCGCCGC
GCTTCCGTCTTTCCCCCTGTTCCTCCTCGTCGTCCTCGTCTGAACTCGCC
CAAGAATCGTCTTTCCGGGATACCTTCTCCCATGTACTTCTCGAAGTGAA
TGCGCACTACGAGGAGCTGCTCATGGAAGGATGGATGGAGGGAAGGAATA
ATTGCCAGCTGGTGCAGCAGTTGCATAAGTTGTTGTTTTGTTTGAATGGG
CTTAATTCCAGGGGGGATGGGAGGGGACGGGGGGGGGGAAGGTTGAGGTG
GGGAAAAGATAGGAGGAGGAGTACGTACACATTTGATGTACATTGTGCCC
TTTTGCTTCCTCGTTAG
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Synonyms
Publications