NO02G02550, NO02G02550 (gene) Nannochloropsis oceanica

Overview
NameNO02G02550
Unique NameNO02G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1434
Alignment locationchr2:713429..714862 -

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Properties
Property NameValue
DescriptionTudor domain-containing protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:713429..714862 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013894RMI1_N
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
BLAST of NO02G02550 vs. NCBI_GenBank
Match: EWM30393.1 (uncharacterized protein Naga_100026g48 [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 7.400e-63
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0
Query:    1 MVQEAAWTQACKSQFPWMELADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKPDASKS 188
            ++ + +W+QAC++QF  M L++LLQ+DIRKL+G+R+ L KM+DV G + G FILQ+VSV+D TKPSSKQ  GDGGQ RVL+LRVTDG S K++AIE+ R+PKLS DTPPGTK+L+ +VRYVKHKLLL+P +VLGV+G V+ LANNF+SSRLLE+QYKL KD+Q K +N A +GPPAFDAFKP  S S
Sbjct:   27 IMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDG-SKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGS 212          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: KXZ45405.1 (hypothetical protein GPECTOR_55g311 [Gonium pectorale])

HSP 1 Score: 79.7 bits (195), Expect = 2.300e-11
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   22 DLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSR 151
            D++  D++KL    +P   +   +  + GP +LQ++ V D ++PS ++  G GG +R+L LR+TDG  +   A+E  R+ +LS +  PGTK+L+S+       +LL P  +  + G VEALA  + + R
Sbjct:   27 DIVNQDLKKLGKGALP-ENVSRTSTAVKGPVVLQVLQVFDVSRPSLRESAGGGGSDRLLCLRLTDGKVT-CKAVEYQRVEQLSEELAPGTKVLLSNANVKDGVILLNPKCIKVLGGRVEALAAAWETQR 153          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_006400559.1 (tudor domain-containing protein 3 [Eutrema salsugineum] >ESQ42012.1 hypothetical protein EUTSA_v10013545mg [Eutrema salsugineum])

HSP 1 Score: 78.6 bits (192), Expect = 5.000e-11
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DIR + G  +P P        + GP +LQI SV D TK S+++ +G    +RVL   +TDG   + +A+E   +P +S D  PGTK+ + +   V+  L+ L P  V  + G V++L   ++  +      + S   +  +++ AG+GPP F+
Sbjct:   59 AELLNMDIRLIGGKSLPEPTELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSSGKRVLKFALTDG-KIEISALEYSHIPSISNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYASLSRSSG--RQSQESKAGDGPPPFE 214          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_002948977.1 (hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis] >EFJ49912.1 hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis])

HSP 1 Score: 77.8 bits (190), Expect = 8.600e-11
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 0
Query:   20 LADLLQTDIRKLEGDRIPLPKMDDV---TGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKP 183
            L D++  D++K+    +P    DDV   + T+ GP +LQI SV D ++P+S++     G +R+L +R+TDG  S   A+E  R+ +LS + PPGTK+L+S+       +LL P S+  + G V+ LA  + + R    +Y   +  +       GE  P F  F P
Sbjct: 1092 LQDVINQDLKKIGKAALP----DDVNRTSTTLKGPLVLQISSVTDVSRPASRECAAGSGADRLLCVRLTDGKLS-CKALEYQRVDQLSENLPPGTKVLLSNATVKNGVVLLNPKSIKVLGGRVDHLAEAWETQR----RYGGVERPKASGPGDDGEMAPPFRHFVP 1248          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: KFK26243.1 (hypothetical protein AALP_AA8G221900 [Arabis alpina])

HSP 1 Score: 76.3 bits (186), Expect = 2.500e-10
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DIR + G  +P          + GP +LQI SV D T+ S+++ +G    +RVL   +TDG   + +A+E   +P ++ D  PGTK+ + +   ++  L+ L P  V  + G V++LA  +   ++ ++   LS+  Q  K   AG+GPP F+
Sbjct:   60 AELLNMDIRLIGGKSLPDSTELRRCSHLQGPKVLQISSVKDVTRSSAEEFLGSSNGKRVLKFSLTDG-KIEISALEYSHIPSINNDVTPGTKVRLENKAVIREGLVCLTPKEVTVMGGYVQSLAEEW---QMKKKYASLSRKSQESK---AGDGPPPFE 211          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: EFH50234.1 (hypothetical protein ARALYDRAFT_488891 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10
Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DI+ + G  +P P        + GP +LQI SV D T+ S+++ +G    +RVL   +TDG  ++ +A+E   +P +S D  PGTK+ + +   ++  L+ L P  V  + G V++L   +       Q  K   +L   +++ AG GPP F+
Sbjct:   60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_010454284.1 (PREDICTED: tudor domain-containing protein 3-like [Camelina sativa])

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFK 182
            A+LL  DIR + G  +P P        I GP +LQI SV D TK S+++ +G    +RVL   +TDG  ++ +A+E   +P ++ D  PGTK+ + +   V+  L+ L P  V  + G V +L   ++ ++        S   +  +++ AG+GPP F+  K
Sbjct:   60 AELLNMDIRLIGGKSLPDPTELRRCSHIQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKFSLTDG-KTEISALEYSHIPSINYDVTPGTKVRLDNKAVVRDGLVCLTPKEVTLLGGNVPSLTEEWQMNKKYASLAHSSG--RKSQESKAGDGPPPFEELK 218          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_018446372.1 (PREDICTED: tudor domain-containing protein 3 [Raphanus sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DIR + G  +P          + GP +LQI SV D TK S+++ +G    +RVL L +TDG  ++ +A+E   +P L+ D  PGTK+ + +   V+  L+ L P  V  + G V++L + ++  R      + S   +  ++  AG+GPP F+
Sbjct:   54 AELLNMDIRLIGGKSLPDATELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKLVLTDG-KTEISALEFSHIPSLNNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGHVQSLFDEWQMKRKYASLSRSSG--RQSQEGKAGDGPPPFE 209          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_020878784.1 (tudor domain-containing protein 3 isoform X1 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10
Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DI+ + G  +P P        + GP +LQI SV D T+ S+++ +G    +RVL   +TDG  ++ +A+E   +P +S D  PGTK+ + +   ++  L+ L P  V  + G V++L   +       Q  K   +L   +++ AG GPP F+
Sbjct:   60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210          
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_020878785.1 (tudor domain-containing protein 3 isoform X2 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10
Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
            A+LL  DI+ + G  +P P        + GP +LQI SV D T+ S+++ +G    +RVL   +TDG  ++ +A+E   +P +S D  PGTK+ + +   ++  L+ L P  V  + G V++L   +       Q  K   +L   +++ AG GPP F+
Sbjct:   60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210          
The following BLAST results are available for this feature:
BLAST of NO02G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30393.17.400e-6365.24uncharacterized protein Naga_100026g48 [Nannochlor... [more]
KXZ45405.12.300e-1134.11hypothetical protein GPECTOR_55g311 [Gonium pector... [more]
XP_006400559.15.000e-1132.08tudor domain-containing protein 3 [Eutrema salsugi... [more]
XP_002948977.18.600e-1133.13hypothetical protein VOLCADRAFT_89400 [Volvox cart... [more]
KFK26243.12.500e-1032.08hypothetical protein AALP_AA8G221900 [Arabis alpin... [more]
EFH50234.13.300e-1031.45hypothetical protein ARALYDRAFT_488891 [Arabidopsi... [more]
XP_010454284.13.300e-1032.10PREDICTED: tudor domain-containing protein 3-like ... [more]
XP_018446372.13.300e-1032.70PREDICTED: tudor domain-containing protein 3 [Raph... [more]
XP_020878784.13.300e-1031.45tudor domain-containing protein 3 isoform X1 [Arab... [more]
XP_020878785.13.300e-1031.45tudor domain-containing protein 3 isoform X2 [Arab... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006899NSK006899Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02550.1NO02G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|143581gene_845Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g48gene257Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02550.1NO02G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02550 ID=NO02G02550|Name=NO02G02550|organism=Nannochloropsis oceanica|type=gene|length=1434bp
ATGGTTCAAGAAGCAGCGTGGACGCAGGCATGCAAATCCCAATTCCCGTG
GATGGAATTGGCGGATTTGCTTCAGgtatgttggcttgtcttcttgagtt
cacgtctcccctcccccgtctttcgcccatccctcgctccatgttacttc
tccaacacgcaaaacctaccaaatcttacgttcagACGGACATCCGGAAG
CTGGAGGGAGACCGTATCCCGCTGCCCAAGATGGACGACGTAACAGGTAC
TATTGGGGGTCCCTTCATTCTTCAAATTGTAAGCGTCATTGATGGGACCA
AACCCAGCAGCAAGCAGCATATTGGGGACGGAGGGCAAGAGCGTGTGCTC
CTGCTACGTGTCACCGATGGAACGTCCAGTAAATTCACGGCGATCGAGAT
GGTACGCCTCCCCAAGCTGAGCACGGACACGCCGCCGGGCACAAAGCTAC
TGGTGAGCGACGTGCGGTATGTGAAGCACAAATTGCTTCTGCAGCCCTGC
TCGGTGCTGGGTGTGGAGGGCGTGGTCGAAGCCTTGGCCAACAATTTTAG
GAGCAGTCGCCTCTTGGAGCAACAATACAAACTCAGCAAGGACCTGCAAG
TAAAGAAGAAAAATGCGGCGGGGGAAGGTCCCCCGGCGTTTGATGCTTTC
AAGCCTGATGCCTCCAAGAGTGgtaatggtgcaggaggagagcccggaag
tggtcattcgcaaggcaagtccaagtcatcgatgccccatccttcgcctg
ctaccatccctcttgctgcccttaagcatgccgatgtcagGGATAAGGGA
GCTACAATACACTCTTCTTGCGAGATTCATGGGCCAAGCAGCCAAGGGCG
GGGCGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGAG
GTTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCCT
TCTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGGA
TCCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGACAGAACAATCATCGTA
GCAGCCGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGG
AGCAGCTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGA
CTATGACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGT
ATAGGGGAGGAGGGCGAGGGGAAGGAGGAAGTGGATATAGCAGTAGAAGC
GGTGCTCGTGGCAGCGTTGGGGGCCGGGGTGGTGGTCGAGGACAACAGGG
CGATCGAGGATGGAGGGGAGGAAGAGGAAGAGGAGGAAGAAGGGGAGGAC
GAGGTGGTGGGTATGGCCCTTCGAACTCCTCCTCTTCTTCGGCTGAGCCA
AGCGTTCATTCCTTGGAAGCCCATTTCCAGATAA
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protein sequence of NO02G02550.1

>NO02G02550.1-protein ID=NO02G02550.1-protein|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MVQEAAWTQACKSQFPWMELADLLQTDIRKLEGDRIPLPKMDDVTGTIGG
PFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRL
PKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSR
LLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKPDASKSGIRELQYTLLARF
MGQAAKGGADRTIIVAAVVVIRREVVVPAEAGAALEEMALLLSPTVVQTM
TVAVARWILFLLLLRIGEDRTIIVAAVVVIRREVVVPAEAGAALEEMALL
LSPTVVQTMTVAVARWILFLLLLRIGEEGEGKEEVDIAVEAVLVAALGAG
VVVEDNRAIEDGGEEEEEEEEGEDEVVGMALRTPPLLRLSQAFIPWKPIS
R*
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Synonyms
Publications