NO02G02550, NO02G02550 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G02550 vs. NCBI_GenBank
Match: EWM30393.1 (uncharacterized protein Naga_100026g48 [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 7.400e-63 Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 1 MVQEAAWTQACKSQFPWMELADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKPDASKS 188
++ + +W+QAC++QF M L++LLQ+DIRKL+G+R+ L KM+DV G + G FILQ+VSV+D TKPSSKQ GDGGQ RVL+LRVTDG S K++AIE+ R+PKLS DTPPGTK+L+ +VRYVKHKLLL+P +VLGV+G V+ LANNF+SSRLLE+QYKL KD+Q K +N A +GPPAFDAFKP S S
Sbjct: 27 IMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDG-SKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGS 212
BLAST of NO02G02550 vs. NCBI_GenBank
Match: KXZ45405.1 (hypothetical protein GPECTOR_55g311 [Gonium pectorale]) HSP 1 Score: 79.7 bits (195), Expect = 2.300e-11 Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 22 DLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSR 151
D++ D++KL +P + + + GP +LQ++ V D ++PS ++ G GG +R+L LR+TDG + A+E R+ +LS + PGTK+L+S+ +LL P + + G VEALA + + R
Sbjct: 27 DIVNQDLKKLGKGALP-ENVSRTSTAVKGPVVLQVLQVFDVSRPSLRESAGGGGSDRLLCLRLTDGKVT-CKAVEYQRVEQLSEELAPGTKVLLSNANVKDGVILLNPKCIKVLGGRVEALAAAWETQR 153
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_006400559.1 (tudor domain-containing protein 3 [Eutrema salsugineum] >ESQ42012.1 hypothetical protein EUTSA_v10013545mg [Eutrema salsugineum]) HSP 1 Score: 78.6 bits (192), Expect = 5.000e-11 Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DIR + G +P P + GP +LQI SV D TK S+++ +G +RVL +TDG + +A+E +P +S D PGTK+ + + V+ L+ L P V + G V++L ++ + + S + +++ AG+GPP F+
Sbjct: 59 AELLNMDIRLIGGKSLPEPTELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSSGKRVLKFALTDG-KIEISALEYSHIPSISNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYASLSRSSG--RQSQESKAGDGPPPFE 214
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_002948977.1 (hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis] >EFJ49912.1 hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis]) HSP 1 Score: 77.8 bits (190), Expect = 8.600e-11 Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 0
Query: 20 LADLLQTDIRKLEGDRIPLPKMDDV---TGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKP 183
L D++ D++K+ +P DDV + T+ GP +LQI SV D ++P+S++ G +R+L +R+TDG S A+E R+ +LS + PPGTK+L+S+ +LL P S+ + G V+ LA + + R +Y + + GE P F F P
Sbjct: 1092 LQDVINQDLKKIGKAALP----DDVNRTSTTLKGPLVLQISSVTDVSRPASRECAAGSGADRLLCVRLTDGKLS-CKALEYQRVDQLSENLPPGTKVLLSNATVKNGVVLLNPKSIKVLGGRVDHLAEAWETQR----RYGGVERPKASGPGDDGEMAPPFRHFVP 1248
BLAST of NO02G02550 vs. NCBI_GenBank
Match: KFK26243.1 (hypothetical protein AALP_AA8G221900 [Arabis alpina]) HSP 1 Score: 76.3 bits (186), Expect = 2.500e-10 Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DIR + G +P + GP +LQI SV D T+ S+++ +G +RVL +TDG + +A+E +P ++ D PGTK+ + + ++ L+ L P V + G V++LA + ++ ++ LS+ Q K AG+GPP F+
Sbjct: 60 AELLNMDIRLIGGKSLPDSTELRRCSHLQGPKVLQISSVKDVTRSSAEEFLGSSNGKRVLKFSLTDG-KIEISALEYSHIPSINNDVTPGTKVRLENKAVIREGLVCLTPKEVTVMGGYVQSLAEEW---QMKKKYASLSRKSQESK---AGDGPPPFE 211
BLAST of NO02G02550 vs. NCBI_GenBank
Match: EFH50234.1 (hypothetical protein ARALYDRAFT_488891 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10 Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DI+ + G +P P + GP +LQI SV D T+ S+++ +G +RVL +TDG ++ +A+E +P +S D PGTK+ + + ++ L+ L P V + G V++L + Q K +L +++ AG GPP F+
Sbjct: 60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_010454284.1 (PREDICTED: tudor domain-containing protein 3-like [Camelina sativa]) HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10 Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFK 182
A+LL DIR + G +P P I GP +LQI SV D TK S+++ +G +RVL +TDG ++ +A+E +P ++ D PGTK+ + + V+ L+ L P V + G V +L ++ ++ S + +++ AG+GPP F+ K
Sbjct: 60 AELLNMDIRLIGGKSLPDPTELRRCSHIQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKFSLTDG-KTEISALEYSHIPSINYDVTPGTKVRLDNKAVVRDGLVCLTPKEVTLLGGNVPSLTEEWQMNKKYASLAHSSG--RKSQESKAGDGPPPFEELK 218
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_018446372.1 (PREDICTED: tudor domain-containing protein 3 [Raphanus sativus]) HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10 Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DIR + G +P + GP +LQI SV D TK S+++ +G +RVL L +TDG ++ +A+E +P L+ D PGTK+ + + V+ L+ L P V + G V++L + ++ R + S + ++ AG+GPP F+
Sbjct: 54 AELLNMDIRLIGGKSLPDATELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKLVLTDG-KTEISALEFSHIPSLNNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGHVQSLFDEWQMKRKYASLSRSSG--RQSQEGKAGDGPPPFE 209
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_020878784.1 (tudor domain-containing protein 3 isoform X1 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10 Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DI+ + G +P P + GP +LQI SV D T+ S+++ +G +RVL +TDG ++ +A+E +P +S D PGTK+ + + ++ L+ L P V + G V++L + Q K +L +++ AG GPP F+
Sbjct: 60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210
BLAST of NO02G02550 vs. NCBI_GenBank
Match: XP_020878785.1 (tudor domain-containing protein 3 isoform X2 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 75.9 bits (185), Expect = 3.300e-10 Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 0
Query: 21 ADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLL-LQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFD 179
A+LL DI+ + G +P P + GP +LQI SV D T+ S+++ +G +RVL +TDG ++ +A+E +P +S D PGTK+ + + ++ L+ L P V + G V++L + Q K +L +++ AG GPP F+
Sbjct: 60 AELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDG-KTEISALEYSHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEW-------QMKKKYANLARSQESKAGVGPPPFE 210 The following BLAST results are available for this feature:
BLAST of NO02G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G02550 ID=NO02G02550|Name=NO02G02550|organism=Nannochloropsis oceanica|type=gene|length=1434bpback to top protein sequence of NO02G02550.1 >NO02G02550.1-protein ID=NO02G02550.1-protein|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bpback to top Synonyms
Publications
|