NO02G02550.1, NO02G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02550.1
Unique NameNO02G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr2:713429..714862 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:713429..714862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02550.1 vs.
Match: EWM30393.1 (uncharacterized protein Naga_100026g48 [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 7.400e-63
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0 
Query:    1 MVQEAAWTQACKSQFPWMELADLLQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKPDASKS 188
            ++ + +W+QAC++QF  M L++LLQ+DIRKL+G+R+ L KM+DV G + G FILQ+VSV+D TKPSSKQ  GDGGQ RVL+LRVTDG S K++AIE+ R+PKLS DTPPGTK+L+ +VRYVKHKLLL+P +VLGV+G V+ LANNF+SSRLLE+QYKL KD+Q K +N A +GPPAFDAFKP  S S
Sbjct:   27 IMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDG-SKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGS 212
The following BLAST results are available for this feature:
BLAST of NO02G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30393.17.400e-6365.24uncharacterized protein Naga_100026g48 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02550NO02G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02550.1NO02G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02550.1.cds1NO02G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02550.1.cds2NO02G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02550.1.cds3NO02G02550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02550.1 ID=NO02G02550.1|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ATGGTTCAAGAAGCAGCGTGGACGCAGGCATGCAAATCCCAATTCCCGTG
GATGGAATTGGCGGATTTGCTTCAGACGGACATCCGGAAGCTGGAGGGAG
ACCGTATCCCGCTGCCCAAGATGGACGACGTAACAGGTACTATTGGGGGT
CCCTTCATTCTTCAAATTGTAAGCGTCATTGATGGGACCAAACCCAGCAG
CAAGCAGCATATTGGGGACGGAGGGCAAGAGCGTGTGCTCCTGCTACGTG
TCACCGATGGAACGTCCAGTAAATTCACGGCGATCGAGATGGTACGCCTC
CCCAAGCTGAGCACGGACACGCCGCCGGGCACAAAGCTACTGGTGAGCGA
CGTGCGGTATGTGAAGCACAAATTGCTTCTGCAGCCCTGCTCGGTGCTGG
GTGTGGAGGGCGTGGTCGAAGCCTTGGCCAACAATTTTAGGAGCAGTCGC
CTCTTGGAGCAACAATACAAACTCAGCAAGGACCTGCAAGTAAAGAAGAA
AAATGCGGCGGGGGAAGGTCCCCCGGCGTTTGATGCTTTCAAGCCTGATG
CCTCCAAGAGTGGGATAAGGGAGCTACAATACACTCTTCTTGCGAGATTC
ATGGGCCAAGCAGCCAAGGGCGGGGCGGACAGAACAATCATCGTAGCAGC
CGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGGAGCAG
CTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGACTATG
ACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGTATAGG
GGAGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGAGG
TTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCCTT
CTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGGAT
CCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGAGGGCGAGGGGAAGGAGG
AAGTGGATATAGCAGTAGAAGCGGTGCTCGTGGCAGCGTTGGGGGCCGGG
GTGGTGGTCGAGGACAACAGGGCGATCGAGGATGGAGGGGAGGAAGAGGA
AGAGGAGGAAGAAGGGGAGGACGAGGTGGTGGGTATGGCCCTTCGAACTC
CTCCTCTTCTTCGGCTGAGCCAAGCGTTCATTCCTTGGAAGCCCATTTCC
AGATAA
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protein sequence of NO02G02550.1

>NO02G02550.1-protein ID=NO02G02550.1-protein|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MVQEAAWTQACKSQFPWMELADLLQTDIRKLEGDRIPLPKMDDVTGTIGG
PFILQIVSVIDGTKPSSKQHIGDGGQERVLLLRVTDGTSSKFTAIEMVRL
PKLSTDTPPGTKLLVSDVRYVKHKLLLQPCSVLGVEGVVEALANNFRSSR
LLEQQYKLSKDLQVKKKNAAGEGPPAFDAFKPDASKSGIRELQYTLLARF
MGQAAKGGADRTIIVAAVVVIRREVVVPAEAGAALEEMALLLSPTVVQTM
TVAVARWILFLLLLRIGEDRTIIVAAVVVIRREVVVPAEAGAALEEMALL
LSPTVVQTMTVAVARWILFLLLLRIGEEGEGKEEVDIAVEAVLVAALGAG
VVVEDNRAIEDGGEEEEEEEEGEDEVVGMALRTPPLLRLSQAFIPWKPIS
R*
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mRNA from alignment at chr2:713429..714862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02550.1 ID=NO02G02550.1|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at chr2:713429..714862- (Nannochloropsis oceanica)
ATGGTTCAAGAAGCAGCGTGGACGCAGGCATGCAAATCCCAATTCCCGTG
GATGGAATTGGCGGATTTGCTTCAGGTATGTTGGCTTGTCTTCTTGAGTT
CACGTCTCCCCTCCCCCGTCTTTCGCCCATCCCTCGCTCCATGTTACTTC
TCCAACACGCAAAACCTACCAAATCTTACGTTCAGACGGACATCCGGAAG
CTGGAGGGAGACCGTATCCCGCTGCCCAAGATGGACGACGTAACAGGTAC
TATTGGGGGTCCCTTCATTCTTCAAATTGTAAGCGTCATTGATGGGACCA
AACCCAGCAGCAAGCAGCATATTGGGGACGGAGGGCAAGAGCGTGTGCTC
CTGCTACGTGTCACCGATGGAACGTCCAGTAAATTCACGGCGATCGAGAT
GGTACGCCTCCCCAAGCTGAGCACGGACACGCCGCCGGGCACAAAGCTAC
TGGTGAGCGACGTGCGGTATGTGAAGCACAAATTGCTTCTGCAGCCCTGC
TCGGTGCTGGGTGTGGAGGGCGTGGTCGAAGCCTTGGCCAACAATTTTAG
GAGCAGTCGCCTCTTGGAGCAACAATACAAACTCAGCAAGGACCTGCAAG
TAAAGAAGAAAAATGCGGCGGGGGAAGGTCCCCCGGCGTTTGATGCTTTC
AAGCCTGATGCCTCCAAGAGTGGTAATGGTGCAGGAGGAGAGCCCGGAAG
TGGTCATTCGCAAGGCAAGTCCAAGTCATCGATGCCCCATCCTTCGCCTG
CTACCATCCCTCTTGCTGCCCTTAAGCATGCCGATGTCAGGGATAAGGGA
GCTACAATACACTCTTCTTGCGAGATTCATGGGCCAAGCAGCCAAGGGCG
GGGCGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGAG
GTTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCCT
TCTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGGA
TCCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGACAGAACAATCATCGTA
GCAGCCGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGG
AGCAGCTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGA
CTATGACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGT
ATAGGGGAGGAGGGCGAGGGGAAGGAGGAAGTGGATATAGCAGTAGAAGC
GGTGCTCGTGGCAGCGTTGGGGGCCGGGGTGGTGGTCGAGGACAACAGGG
CGATCGAGGATGGAGGGGAGGAAGAGGAAGAGGAGGAAGAAGGGGAGGAC
GAGGTGGTGGGTATGGCCCTTCGAACTCCTCCTCTTCTTCGGCTGAGCCA
AGCGTTCATTCCTTGGAAGCCCATTTCCAGATAA
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Coding sequence (CDS) from alignment at chr2:713429..714862-

>NO02G02550.1 ID=NO02G02550.1|Name=NO02G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr2:713429..714862- (Nannochloropsis oceanica)
ATGGTTCAAGAAGCAGCGTGGACGCAGGCATGCAAATCCCAATTCCCGTG
GATGGAATTGGCGGATTTGCTTCAGACGGACATCCGGAAGCTGGAGGGAG
ACCGTATCCCGCTGCCCAAGATGGACGACGTAACAGGTACTATTGGGGGT
CCCTTCATTCTTCAAATTGTAAGCGTCATTGATGGGACCAAACCCAGCAG
CAAGCAGCATATTGGGGACGGAGGGCAAGAGCGTGTGCTCCTGCTACGTG
TCACCGATGGAACGTCCAGTAAATTCACGGCGATCGAGATGGTACGCCTC
CCCAAGCTGAGCACGGACACGCCGCCGGGCACAAAGCTACTGGTGAGCGA
CGTGCGGTATGTGAAGCACAAATTGCTTCTGCAGCCCTGCTCGGTGCTGG
GTGTGGAGGGCGTGGTCGAAGCCTTGGCCAACAATTTTAGGAGCAGTCGC
CTCTTGGAGCAACAATACAAACTCAGCAAGGACCTGCAAGTAAAGAAGAA
AAATGCGGCGGGGGAAGGTCCCCCGGCGTTTGATGCTTTCAAGCCTGATG
CCTCCAAGAGTGGGATAAGGGAGCTACAATACACTCTTCTTGCGAGATTC
ATGGGCCAAGCAGCCAAGGGCGGGGCGGACAGAACAATCATCGTAGCAGC
CGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGGAGCAG
CTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGACTATG
ACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGTATAGG
GGAGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGAGG
TTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCCTT
CTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGGAT
CCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGAGGGCGAGGGGAAGGAGG
AAGTGGATATAGCAGTAGAAGCGGTGCTCGTGGCAGCGTTGGGGGCCGGG
GTGGTGGTCGAGGACAACAGGGCGATCGAGGATGGAGGGGAGGAAGAGGA
AGAGGAGGAAGAAGGGGAGGACGAGGTGGTGGGTATGGCCCTTCGAACTC
CTCCTCTTCTTCGGCTGAGCCAAGCGTTCATTCCTTGGAAGCCCATTTCC
AGATAA
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Synonyms
Publications