NO02G02540, NO02G02540 (gene) Nannochloropsis oceanica

Overview
NameNO02G02540
Unique NameNO02G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2349
Alignment locationchr2:710966..713314 +

Link to JBrowse

Properties
Property NameValue
DescriptionAsparaginyl-trna synthetase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:710966..713314 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006195aa-tRNA-synth_II
IPR004364aa-tRNA-synt_II
IPR004365NA-bd_OB_tRNA
IPR002312Asp/Asn-tRNA-synth_IIb
Homology
BLAST of NO02G02540 vs. NCBI_GenBank
Match: EWM30392.1 (asparaginyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 868.2 bits (2242), Expect = 1.400e-248
Identity = 440/588 (74.83%), Postives = 488/588 (82.99%), Query Frame = 0
Query:    1 MFVGSRRGFSPCLCFNLTLLIIMTILSRIVLSAGPRH--HVAAFTAL--------SSTSRGQRHAPS--SRSSSFALPHTRRSPFSFAPATRQYXXXXXXXXXXXXXXXXXXPARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            M +G+R+G S C C +LT LI +T+ S   + A  RH    AAF +L        S TS  +  AP   +++ S   P    SP S    T                     PAR+KVRDILI GDDSL+GQRVT+KGW RT+RSQKTFSFIE+NDGS+LGGLQ+VADAEKV  YEA ++ IHTGAA+GVVG IK SPGKGQKYE++AE++EV+GGCDPE YPLQKKRHTLEFLRGIAHLRPRTNTLAAV+RVRS+LAFATH FFQ+QGFYYLQSPIITASDCEGAGEMFRVTTLPDKVS +PR + + D IDY+ DFFGAPA+LTVSGQLSGEAYACA+GDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADL+DNMRNAEAYVKAIV H+LKEC EDLAFFEKFYDKTL+ RLNTLVSE FARVEY EAVRLLQ EIAKD  AW +P+V+FGTDLQTEHERWLCEK F RATFVYNYPR+IKAFYMRDNEDG+TVAAMDLLVPG+GELIGGSQREERL RLE KL+EFGLD+EDYWWYLDLRRFG VPHSGYGLGFERLVCYVTGVENIR+AIAFPRTPGSA F
Sbjct:    1 MVLGTRKGTSSCFCLSLTNLITVTMFSCAAI-ANSRHQAQTAAFGSLLAKVPTKSSRTSPRRLLAPCAFTQAPSCRPPRLLVSPVS----TSTTLYVSSSTAAPSTSTATTVPARLKVRDILINGDDSLIGQRVTVKGWTRTIRSQKTFSFIEINDGSSLGGLQVVADAEKVCDYEAVLSKIHTGAALGVVGVIKASPGKGQKYEVAAESVEVVGGCDPEAYPLQKKRHTLEFLRGIAHLRPRTNTLAAVARVRSALAFATHNFFQEQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSELPRVEGEEDRIDYSHDFFGAPAYLTVSGQLSGEAYACAMGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLQDNMRNAEAYVKAIVRHVLKECEEDLAFFEKFYDKTLMARLNTLVSESFARVEYTEAVRLLQEEIAKDRGAWQFPDVDFGTDLQTEHERWLCEKKFQRATFVYNYPREIKAFYMRDNEDGKTVAAMDLLVPGVGELIGGSQREERLGRLEAKLEEFGLDKEDYWWYLDLRRFGSVPHSGYGLGFERLVCYVTGVENIREAIAFPRTPGSATF 583          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: XP_002183471.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45171.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 627.1 bits (1616), Expect = 5.400e-176
Identity = 304/463 (65.66%), Postives = 363/463 (78.40%), Query Frame = 0
Query:  122 VTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLP-DKVSLIPRKK----EDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNED--GETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            V+IKGWVRT+R QKT +F+EVNDGS L G+Q V   +KV    +A +  + TG A+ + G +  S G  Q  E++A  + V+G C  ETYPL KKRHTLE+LR IAHLRPRTNT+AAV+RVRS LA A H FFQ QGF Y+Q+P++TASDCEGAGE+FRVTTL  D VS +P+ K    ++ D +DY++DFFG PA+LTVSGQL GE +ACALGD+YTFGPTFRAENSQT+RHLAEF+M+EPEMAFADL   M NAE  +K +V H+L  CGEDL FF+KFYDK L+ RL  LV +PF RV Y+EA+  LQ EI KD S W +P+V FGTDL TEHERWL E  F  A FVYNYP+ IKAFYMRDNE+  GETV AMDLLVPG+GELIGGSQREERL+ LE+K+ + GLD+EDYWWYLDLRRFG VPH+GYGLGFERLV YV G+ENIR+AIAFPR PG+A F
Sbjct:    5 VSIKGWVRTVRKQKTLAFVEVNDGSNLSGIQCVIVFDKVDEATKAELDKVTTGCAVELTGPLVASQGGKQAVELAATVLRVVGACPAETYPLAKKRHTLEYLRSIAHLRPRTNTIAAVARVRSHLAGAIHAFFQTQGFVYVQTPLVTASDCEGAGELFRVTTLNLDSVSTLPKAKNENGKEQDRVDYSEDFFGKPAYLTVSGQLGGETHACALGDIYTFGPTFRAENSQTSRHLAEFHMVEPEMAFADLTSAMNNAENMLKYVVQHVLDSCGEDLEFFQKFYDKALMTRLEKLVQKPFVRVSYREAIEFLQEEINKDPSKWQFPDVSFGTDLATEHERWLAETKFESAVFVYNYPKAIKAFYMRDNEEDGGETVNAMDLLVPGVGELIGGSQREERLDVLEQKIADVGLDKEDYWWYLDLRRFGSVPHAGYGLGFERLVTYVCGIENIREAIAFPRYPGNAEF 467          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: EJK44046.1 (hypothetical protein THAOC_37448 [Thalassiosira oceanica])

HSP 1 Score: 622.5 bits (1604), Expect = 1.300e-174
Identity = 307/484 (63.43%), Postives = 370/484 (76.45%), Query Frame = 0
Query:  101 PARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTL-PDKVSLIPRKKEDS----DAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNED--GETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            P R+K  D  +  D       V+IKGWVRT+R QKT +F+EVNDGS++ G+Q V   + +       I  + TG ++  +G I +S G  Q  E+SA ++ ++G C  ET+PL KKRH+LE+LR IAHLRPRTNT+AAV+RVRS+LA + H FFQD+GF Y+Q+P+ITASDCEGAGEMFRVTTL  D V  +PR K+D       +DY +DFFG  AFLTVSGQL GE +ACALGDVYTFGPTFRAENSQTTRHLAEF M+EPEMAFADL   M NAEA +K++VG  L +C EDL FF KF+DK L  RL  LVS+PF R+ Y++A++ LQ EIAKD S W +P+VEFGTDL TEHERWL EK F  A FVYNYP+KIKAFYMRDN++  GETV AMDLLVPG+GEL+GGSQREER++ L +K++E  LD +DYWWYLDLRRFG VPHSGYGLGFERLV YV G+ENIRDAIAFPR PGSA F
Sbjct:  102 PRRVKTVDAEVSEDP------VSIKGWVRTVRKQKTLAFVEVNDGSSMSGIQCVLPFDAIDEATLGEIENLTTGCSVHAIGNIVKSQGGKQSVELSATSLRIVGSCPGETFPLAKKRHSLEYLRTIAHLRPRTNTIAAVARVRSTLAGSIHAFFQDEGFNYVQTPLITASDCEGAGEMFRVTTLDTDNVESLPRAKDDDGNELPGVDYGEDFFGKAAFLTVSGQLGGETHACALGDVYTFGPTFRAENSQTTRHLAEFWMVEPEMAFADLTSAMDNAEAMLKSVVGVALDKCDEDLTFFAKFFDKGLKDRLQKLVSKPFVRLPYRDAIKYLQEEIAKDPSKWQFPDVEFGTDLATEHERWLAEKKFESAVFVYNYPKKIKAFYMRDNDEDGGETVNAMDLLVPGVGELVGGSQREERMDVLVDKMRELDLDEDDYWWYLDLRRFGSVPHSGYGLGFERLVTYVCGIENIRDAIAFPRYPGSAEF 579          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: XP_002289684.1 (asparaginyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >EED93221.1 asparaginyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 621.7 bits (1602), Expect = 2.300e-174
Identity = 307/484 (63.43%), Postives = 369/484 (76.24%), Query Frame = 0
Query:  101 PARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTL-PDKVSLIPRKKEDS----DAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNED--GETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            P R+K  +  +  D       V++KGWV+T+R QKT +F+EVNDGS +GG+Q V   + V     AAI  + TG ++   G I  S G  Q  E+SA ++ V+G C  ET+PL KKRH+LE+LR IAHLRPRTNT+AAV+RVRS+LA + H FFQ +GF Y+Q+P+ITASDCEGAGEMFRVTTL  D VS +PR K++       +DYT+DFFG  AFLTVSGQL GE YACALGDVYTFGPTFRAENSQT RHLAEF M+EPEMAFADL   M NAE+ +K++VG +L++C EDL FF  F+DK L  RL  +V +PF RV Y++A+  LQ EIAKD S W +PEVEFGTDL TEHERWL E  F  A FVYNYP+KIKAFYMRDN++  GETV AMDLLVPG+GEL+GGSQREERL+ L EK+KE GL+ EDYWWYLDLRRFG VPH+GYGLGFERLV YV G+ENIRDAIA+PR PG+A F
Sbjct:   10 PPRVKTAEAQVSEDP------VSVKGWVKTVRKQKTLAFVEVNDGSNMGGIQCVVPFDGVDEDTLAAIDNLTTGCSVHATGLIVNSQGGKQSVELSASSLRVVGTCPGETFPLAKKRHSLEYLRTIAHLRPRTNTIAAVARVRSTLAGSIHSFFQGEGFQYVQTPLITASDCEGAGEMFRVTTLNTDDVSSLPRAKDEDGKELPGVDYTEDFFGKAAFLTVSGQLGGETYACALGDVYTFGPTFRAENSQTARHLAEFWMVEPEMAFADLTSAMDNAESMLKSVVGEVLEKCDEDLTFFANFFDKGLKNRLKKVVEKPFVRVAYRDAIGYLQEEIAKDPSKWQFPEVEFGTDLATEHERWLAETKFESAVFVYNYPKKIKAFYMRDNDEDGGETVNAMDLLVPGVGELVGGSQREERLDVLIEKMKELGLNEEDYWWYLDLRRFGSVPHAGYGLGFERLVTYVCGIENIRDAIAYPRYPGNAEF 487          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: CBJ48788.1 (Asparaginyl-tRNA Synthetase [Ectocarpus siliculosus])

HSP 1 Score: 620.5 bits (1599), Expect = 5.100e-174
Identity = 309/474 (65.19%), Postives = 364/474 (76.79%), Query Frame = 0
Query:  103 RIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            R +V+ I+   DD LLG+ V +KGWVRT R QK FSF+E+NDGS + G+Q+V   + V  Y +A+  + TGA++ V G + ESPGKGQ++E+ A+ + V+G C P  YPLQKKRHTLEFLRGIAHLRPRTNT+AAV+RVRS+LA ATH FF+++GF YLQSPIITASDCEGAGEMFRVTTLP +VS +P  ++ S   DY+QDFFG PAFLTVSGQLSGE +ACALGDVYTFGPTFRAENSQTTRHLAEF MIEPEM+FADL+D+M NAEA+VK +V H ++ CG DL FF KFYDK L+ RL  +  +PF R                                 TEHERWL E  ++ A FVY+YPR IKAFYMRDNEDG+TVAAMDLLVPG+GELIGGSQREERLE+LE K+ EF L  EDYWWY DLRR+G VPH+GYGLGFERLVCYVTGVENIRDAIAFPR+PGSA F
Sbjct:   43 RTRVKAIMEATDDPLLGKTVAVKGWVRTKRDQKAFSFVEINDGSCMKGVQVVI-PQDVPTY-SAVERLTTGASVSVTGVVVESPGKGQRFEVKAQEVHVVGEC-PTEYPLQKKRHTLEFLRGIAHLRPRTNTIAAVARVRSALAQATHDFFREEGFLYLQSPIITASDCEGAGEMFRVTTLPSEVSKVPTLEDGS--TDYSQDFFGKPAFLTVSGQLSGETHACALGDVYTFGPTFRAENSQTTRHLAEFWMIEPEMSFADLRDDMDNAEAFVKHVVSHAMEVCGSDLEFFNKFYDKELLQRLQRIKDKPFVR---------------------------------TEHERWLAETRYDTAVFVYDYPRDIKAFYMRDNEDGKTVAAMDLLVPGVGELIGGSQREERLEQLEAKMVEFNLSPEDYWWYNDLRRYGSVPHAGYGLGFERLVCYVTGVENIRDAIAFPRSPGSAEF 478          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: GAX27501.1 (asparaginyl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 619.8 bits (1597), Expect = 8.700e-174
Identity = 300/458 (65.50%), Postives = 357/458 (77.95%), Query Frame = 0
Query:  122 VTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMR--DNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            +TIKGWVRT+R QKT +F +VNDGS LGG+Q V + +++    +AAI  + TG A+ + G +  S G  Q  E++A+T+ V+G C  +TYPL KKRH+LE+LR IAHLRPRTNT+AAV+RVRS LA A H FFQ Q F Y+Q+P+ITASDCEGAGE+FRVTTL D    +PR       +DY+QDFFG PAFLTVSGQL GE +ACALGD+YTFGPTFRAENSQTTRHLAEF+M+EPEMAFADL+  M NAE  +K  V H+LK C EDL FF  FYDK L+ RL  LV +PFARV Y+EA+  LQ EIAKD S W YP VEFGTDL TEHERWL E  F    FVYNYP  IKAFYMR  D ++GETV AMDLLVPG+GEL+GGSQREERL+ LE+KL++  L+ +DYWWYLDLRR+G VPH+GYGLGFERLV YVTG+ENIR+AIAFPR PG+A F
Sbjct:   80 ITIKGWVRTIRKQKTLAFAQVNDGSNLGGIQCVLNFDQLDEASQAAIDQVTTGCAVQITGPLVPSQGGQQAVEVAAKTLRVVGLCPADTYPLAKKRHSLEYLRSIAHLRPRTNTIAAVARVRSQLAAAIHSFFQSQNFVYVQTPLITASDCEGAGELFRVTTL-DLEQELPRLNNTDRTVDYSQDFFGKPAFLTVSGQLGGETHACALGDIYTFGPTFRAENSQTTRHLAEFHMVEPEMAFADLQTAMENAEQLLKYTVSHVLKNCQEDLTFFSSFYDKELLDRLQKLVDQPFARVSYREAIAYLQEEIAKDPSKWQYPHVEFGTDLATEHERWLAETKFESCVFVYNYPAAIKAFYMRANDEDNGETVNAMDLLVPGVGELVGGSQREERLDVLEQKLRDNNLNLDDYWWYLDLRRYGSVPHAGYGLGFERLVQYVTGIENIREAIAFPRYPGNAEF 536          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: GAX26506.1 (asparaginyl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 619.8 bits (1597), Expect = 8.700e-174
Identity = 300/458 (65.50%), Postives = 357/458 (77.95%), Query Frame = 0
Query:  122 VTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMR--DNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            +TIKGWVRT+R QKT +F +VNDGS LGG+Q V + +++    +AAI  + TG A+ + G +  S G  Q  E++A+T+ V+G C  +TYPL KKRH+LE+LR IAHLRPRTNT+AAV+RVRS LA A H FFQ Q F Y+Q+P+ITASDCEGAGE+FRVTTL D    +PR       +DY+QDFFG PAFLTVSGQL GE +ACALGD+YTFGPTFRAENSQTTRHLAEF+M+EPEMAFADL+  M NAE  +K  V H+LK C EDL FF  FYDK L+ RL  LV +PFARV Y+EA+  LQ EIAKD S W YP VEFGTDL TEHERWL E  F    FVYNYP  IKAFYMR  D ++GETV AMDLLVPG+GEL+GGSQREERL+ LE+KL++  L+ +DYWWYLDLRR+G VPH+GYGLGFERLV YVTG+ENIR+AIAFPR PG+A F
Sbjct:   56 ITIKGWVRTIRKQKTLAFAQVNDGSNLGGIQCVLNFDQLDEASQAAIDQVTTGCAVQITGPLVPSQGGQQAVEVAAKTLRVVGLCPADTYPLAKKRHSLEYLRSIAHLRPRTNTIAAVARVRSQLAAAIHSFFQSQNFVYVQTPLITASDCEGAGELFRVTTL-DLEQELPRLNNTDRTVDYSQDFFGKPAFLTVSGQLGGETHACALGDIYTFGPTFRAENSQTTRHLAEFHMVEPEMAFADLQTAMENAEQLLKYTVSHVLKNCQEDLTFFSSFYDKELLDRLQKLVDQPFARVSYREAIAYLQEEIAKDPSKWQYPHVEFGTDLATEHERWLAETKFESCVFVYNYPAAIKAFYMRANDEDNGETVNAMDLLVPGVGELVGGSQREERLDVLEQKLRDNNLNLDDYWWYLDLRRYGSVPHAGYGLGFERLVQYVTGIENIREAIAFPRYPGNAEF 512          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: XP_005821542.1 (asparaginyl-tRNA synthetase [Guillardia theta CCMP2712] >EKX34562.1 asparaginyl-tRNA synthetase [Guillardia theta CCMP2712])

HSP 1 Score: 605.5 bits (1560), Expect = 1.700e-169
Identity = 305/474 (64.35%), Postives = 362/474 (76.37%), Query Frame = 0
Query:  103 RIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            R+KVR+I++   ++L+G+ V +KGWVRT+RSQK+FSFIE+NDGS   G+QIV +A+      A +  + TGA++ V GTI ESPG+GQ+YE++A  IE++G C  + YPLQKKRHTLEFLR IAHLRPRTNTL +++RVRS+LA ATH FFQ QGF YLQSPIITASDCEGAGEMFRVTTLP +V  +P+ KE S  IDY++DFFG PA+LTVSGQLSGE +ACALGD+YTFGPTFRAENSQT+RHLAEF MIEPEMAFADL+  M NAEAYVK +V H L+ CGEDLAFF + YDKTL+ RL  LV +PFA+V Y EAV LLQ EIAKD+S W YP+V+FGTDL+                                      VAA DLLVPGIGEL+GGSQREERL+ L +KLKEFGL  EDYWWYLDLRR+G  PH+GYGLGFERLVCYVT  ENIRDAIA+PR PG+A F
Sbjct:  198 RLKVREIMM-SQENLVGKEVIVKGWVRTVRSQKSFSFIELNDGSLPKGIQIVVNADLPT--YAEVEKLCTGASVAVKGTIVESPGQGQQYEVAASEIELVGDCSGKDYPLQKKRHTLEFLRSIAHLRPRTNTLGSIARVRSALAQATHAFFQKQGFLYLQSPIITASDCEGAGEMFRVTTLPSEVDKLPKTKEGS--IDYSKDFFGKPAYLTVSGQLSGETFACALGDIYTFGPTFRAENSQTSRHLAEFWMIEPEMAFADLQSVMENAEAYVKFVVKHALETCGEDLAFFNQMYDKTLLERLKDLVEKPFAKVSYSEAVELLQAEIAKDKSKWQYPDVKFGTDLR--------------------------------------VAATDLLVPGIGELVGGSQREERLDVLVDKLKEFGLSPEDYWWYLDLRRYGSTPHAGYGLGFERLVCYVTATENIRDAIAYPRYPGNAEF 628          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: OEU17173.1 (asparaginyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 605.1 bits (1559), Expect = 2.200e-169
Identity = 295/475 (62.11%), Postives = 360/475 (75.79%), Query Frame = 0
Query:  111 IKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKV-AGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLP-DKVSLIP-----RKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNED--GETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            +   +S  G  V IKGWVRT+R QKT +F+EVNDGS + G+Q V   + +    +  +A + TG ++ V G + +S G  Q  E++A  + V+G C  + YPL KKRH+LE+LR +AHLRPRTNT+AAV+RVRS LA + H FFQ  GF Y+Q+P+ITASDCEGAGE+FRVTTL  D  S +P       K+ +D +D +QDFFG PA+LTVSGQL GE YA A+GD+YTFGPTFRAENSQTTRHLAEF+M+EPEMAFADL   M NAE  +K +V H+L  C EDL FF KFYDK L+ RL  LV++PF R+ Y++A++ LQ EIAKD S W +PEVEFGTDL TEHERWL E  F+ A FVYNYP+ IKAFYMRDN++  GETV AMDLLVPG+GEL+GGSQREERL+ L +K+KE  LD +DYWWYLDLRRFG VPHSGYGLGFERLV YV G+ENIR+AIAFPR PG A F
Sbjct:   22 VDAKESTDGNPVLIKGWVRTIRKQKTLAFVEVNDGSNMNGIQCVLSFDDIDEETKKELARVTTGCSVVVEGPLVKSQGGKQTVEVAATKLRVVGECPGDAYPLAKKRHSLEYLRTLAHLRPRTNTIAAVARVRSQLAGSIHAFFQKTGFVYVQTPLITASDCEGAGELFRVTTLDIDNASSLPLVKTEDGKDTTDIVDSSQDFFGKPAYLTVSGQLGGETYASAMGDIYTFGPTFRAENSQTTRHLAEFHMVEPEMAFADLDSAMENAEQMLKFVVKHVLDNCQEDLTFFGKFYDKGLIARLEKLVAQPFVRISYRDAIKYLQEEIAKDPSKWQFPEVEFGTDLSTEHERWLAETKFDSAVFVYNYPKSIKAFYMRDNDEDGGETVNAMDLLVPGVGELVGGSQREERLDTLLDKMKEQDLDPDDYWWYLDLRRFGSVPHSGYGLGFERLVTYVCGMENIREAIAFPRYPGHAEF 496          
BLAST of NO02G02540 vs. NCBI_GenBank
Match: XP_005778528.1 (hypothetical protein EMIHUDRAFT_443485 [Emiliania huxleyi CCMP1516] >XP_005788838.1 asparagine--tRNA ligase [Emiliania huxleyi CCMP1516] >EOD26099.1 hypothetical protein EMIHUDRAFT_443485 [Emiliania huxleyi CCMP1516] >EOD36409.1 asparagine--tRNA ligase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 603.2 bits (1554), Expect = 8.400e-169
Identity = 308/530 (58.11%), Postives = 372/530 (70.19%), Query Frame = 0
Query:  102 ARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLP----------------DKVSLIPRK-----------KE----DSDAID------------------------YTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
            +R++V   L++G ++ LG+ V +KGWVRT+R+QK+FSF+EVNDGS+L G+Q+VA+ + +  Y+  +  + TGAA+ V G +  SP K Q  E+ A  +E++G C  ++YPLQKKRH+LEFLR IAHLRPRTNT+ A  RVRS+L+FATH+FF+ +GF ++ +P++TASDCEGAGEMFRVTTLP                D V+ + R            KE    D +A+D                        +  DFFG  A+LTVSGQL  E YA ALGDVYTFGPTFRAE+S T RHLAEF MIEPEMAF DL  NM NAEAYVK +V + L+ C +D A F +FYDK L  RL  LV  PFARV Y EAV LL+ EIAKD S W YP VEFGTDL TEHERWL E  F  A FVYNYP+ IKAFYMRDN+DG+TVAAMDLLVPG+GELIGGSQREERL  L  K++E GLD EDYWWY+DLRR+G VPHSGYGLGFERLVCYVTG+ NIRD I FPR PGS  F
Sbjct:   58 SRVRVAS-LLEGGEARLGETVVVKGWVRTVRTQKSFSFVEVNDGSSLKGVQVVAE-DGLDSYD-VVDALSTGAAVAVRGEVVASPAKEQSIELRASLVELVGSCPADSYPLQKKRHSLEFLRSIAHLRPRTNTIGAAMRVRSALSFATHEFFRSRGFVHVHTPLLTASDCEGAGEMFRVTTLPAAGEAAQPAAAAAGCGDDVAALDRAVKSAGEAVRALKEAAVVDKEAVDGAVQELLARKAKLQAATEKQVGDPFADDFFGRAAYLTVSGQLCAETYASALGDVYTFGPTFRAEDSNTARHLAEFWMIEPEMAFTDLAANMDNAEAYVKHVVQYALRSCADDFAMFAQFYDKGLKARLQALVETPFARVSYTEAVELLRAEIAKDPSKWEYPCVEFGTDLATEHERWLAEVAFGSAVFVYNYPKAIKAFYMRDNDDGKTVAAMDLLVPGVGELIGGSQREERLPMLLSKMEESGLDPEDYWWYVDLRRYGSVPHSGYGLGFERLVCYVTGIPNIRDVIPFPRYPGSCDF 584          
The following BLAST results are available for this feature:
BLAST of NO02G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30392.11.400e-24874.83asparaginyl-trna synthetase [Nannochloropsis gadit... [more]
XP_002183471.15.400e-17665.66predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK44046.11.300e-17463.43hypothetical protein THAOC_37448 [Thalassiosira oc... [more]
XP_002289684.12.300e-17463.43asparaginyl-trna synthetase [Thalassiosira pseudon... [more]
CBJ48788.15.100e-17465.19Asparaginyl-tRNA Synthetase [Ectocarpus siliculosu... [more]
GAX27501.18.700e-17465.50asparaginyl-tRNA synthetase [Fistulifera solaris][more]
GAX26506.18.700e-17465.50asparaginyl-tRNA synthetase [Fistulifera solaris][more]
XP_005821542.11.700e-16964.35asparaginyl-tRNA synthetase [Guillardia theta CCMP... [more]
OEU17173.12.200e-16962.11asparaginyl-tRNA synthetase [Fragilariopsis cylind... [more]
XP_005778528.18.400e-16958.11hypothetical protein EMIHUDRAFT_443485 [Emiliania ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006898NSK006898Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02540.1NO02G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574326gene_844Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g49gene256Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02540.1NO02G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02540 ID=NO02G02540|Name=NO02G02540|organism=Nannochloropsis oceanica|type=gene|length=2349bp
GCGAGGCTGCTGACATGACAAGGAATTATGCGCTTAGTCATTACTCCATT
TACAGAGCTGCATACACCTTACAGGTAGCCGCGTAAAGCGAAGCAAGGGA
ATTGCCTCGACCACGTAGCCAGCTGGTTTGACCAGCAACCATTGGCACGC
CCTCCTTGCCTTGCACCATGAGCGTCATCGTCGTGGGGTATCAATACAAT
ACGATGATCGCATATCTAACGCTGGCGCTGCGTCCTCCATTACCACAGGT
CTCCGGCTTGTTGCAGGGCGCAAGGAACGACACGGAGAAAGCTGAGCTCC
CTCTTCACTCTCCCTCGGTGGCGGCAGCGCGGGTGCACGACTAAATTGGC
CTTGCATCGATTGATTGACCTCCCCCCTTGGCGCGTCCCACTCTACGTGC
CTTCATCCGAACACCTTCGGAAATGTTTGTGGGCAGTCGCAGGGGGTTCT
CGCCTTGCTTGTGTTTTAATCTGACACTTTTAATCATCATGACAATTCTG
TCACGCATCGTGCTTTCTGCCGGCCCCCGGCACCATGTAGCAGCGTTCAC
TGCATTGTCCTCCACTTCAAGAGGCCAGCGCCACGCTCCTTCCTCTCGCT
CCTCGTCTTTCGCCCTTCCTCACACCCGCCGGTCACCATTCTCCTTCGCA
CCAGCAACGCGACAATACGCAACTACTACAACTACTATCCCTCCAACCAC
CACCACCTCTACAACGACGGAGCCCGCCCGCATCAAAGTCCGCGACATCC
TCATTAAAGGCGACGACTCCCTGCTCGGGCAACGCGTCACCATCAAAGGG
TGGGTCCGCACGCTCCGTTCGCAAAAAACCTTCAGCTTTATTGAAGTTAA
TGACGGCAGTACGCTCGGTGGGCTTCAGATAGTCGCGGACGCCGAAAAGG
TCGCTGGGTACGAGGCAGCTATTGCAGGCATCCACACTGGTGCGGCAATT
GGCGTGGTGGGGACGATCAAAGAATCACCGGGTAAAGGGCAAAAGTACGA
AATTTCAGCAGAGACTATTGAGGTGATCGGTGGATGTGATCCGGAGACGT
ATCCCTTGCAGAAGAAGAGGCATACTTTAGAGTTTTTGCGTGGCATCGCT
CACTTGAGGCCACGGACTAACACTCTGGCGGCGGTGTCAAGAGTGAGATC
GAGTTTAGCGTTTGCCACCCATAAATTTTTCCAGGATCAGGGATTTTATT
ACTTGCAGAGTCCGATCATCACGGCTTCGGATTGCGAGGGGGCGGGGGAG
ATGTTTCGGGTGACGACCTTGCCAGATAAAGTGTCGCTCATTCCAAGGAA
GAAGGAGGACAGCGATGCGATCGATTACACGCAAGATTTTTTCGGGGCCC
CTGCCTTTTTGACCGTGTCGGGCCAATTATCAGGCGAGGCTTATGCGTGT
GCCCTTGGGGATGTGTACACGTTTGGGCCTACGTTTAGGGCGGAAAATAG
TCAGACGACGCGGCATCTGGCGGAGTTCAACATGATTGAGCCCGAAATGG
CCTTTGCAGATCTGAAGGACAACATGCGTAACGCCGAAGCGTATGTCAAG
GCAATTGTCGGACATATCTTGAAGGAGTGTGGAGAGGATTTGGCGTTCTT
TGAGAAGTTTTACGATAAGACGTTGGTTGGGCGGTTGAATACGgtaaggg
agggagggagggagggaaggcacacgagagcaaattaatgtctatgtttt
ctaatcccttccgttcctgcaaagtcaagcgttcctcccgctcacacctt
ccccgatcactacatgcagCTGGTCTCCGAGCCCTTTGCCCGGGTGGAGT
ACAAGGAAGCCGTGCGTTTGTTGCAAGGAGAGATTGCCAAAGACGAGAGC
GCGTGGGCTTACCCCGAGGTGGAATTTGGGACTGACCTACAGACGGAGCA
CGAACGGTGGTTGTGTGAGAAGCATTTCAACAGAGCAACATTTGTGTATA
ACTACCCAAGGAAAATAAAGGCTTTTTATATGAGGGATAATGAGGATGGG
GAGACGGTGGCGGCGATGGACTTGCTGGTGCCGGGGATAGGGGAATTGAT
TGGGGGGTCACAGAGGGAGGAGCGGCTGGAGAGGCTGGAGGAGAAGTTGA
AAGAATTTGGGCTGGACAGGGAGGATTATTGGTGGTACTTGGATTTAAGG
CGGTTTGGGGGAGTGCCGCACAGTGGGTACGGTTTGGGGTTTGAACGGTT
GGTTTGTTATGTTACAGGGGTGGAGAATATTAGGGATGCCATCGCCTTCC
CGCGGACACCGGGAAGTGCGTTGTTTTAGAGAAGGAAGGAGATGCCGCGG
ACGAAGGAGGGAAAAAATTAAAATCATACAAGACTTATATTGAGAAAAG
back to top

protein sequence of NO02G02540.1

>NO02G02540.1-protein ID=NO02G02540.1-protein|Name=NO02G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MFVGSRRGFSPCLCFNLTLLIIMTILSRIVLSAGPRHHVAAFTALSSTSR
GQRHAPSSRSSSFALPHTRRSPFSFAPATRQYATTTTTIPPTTTTSTTTE
PARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGG
LQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIE
VIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATH
KFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAI
DYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLA
EFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKT
LVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTE
HERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGEL
IGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFER
LVCYVTGVENIRDAIAFPRTPGSALF*
back to top
Synonyms
Publications