NO02G02360, NO02G02360 (gene) Nannochloropsis oceanica

Overview
NameNO02G02360
Unique NameNO02G02360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length453
Alignment locationchr2:657302..657754 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:657302..657754 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:1990879CST complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR029146Ten1_animal_plant
Homology
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: EWM30426.1 (uncharacterized protein Naga_100210g9 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 8.400e-36
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = 0 
Query:    1 MSATEMSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGG--NGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M++T+MSIQHGEI FLHEL   P P +   ERSVRV GRC+ ++T Q+R+++QDR++ LTV+IELI+DQ F +DGLYQ IGELRE  ER    +GG  +    +LRARVARAVDG+D+SLYEQSVRLRRAFLE+H
Sbjct:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELRE--ERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERH 133
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_004334810.1 (Hypothetical protein ACA1_093430 [Acanthamoeba castellanii str. Neff] >ELR12797.1 Hypothetical protein ACA1_093430 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 0 
Query:    8 IQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQD---RASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKHKMVG 138
            +Q G+I  + E+    L  ++   +SVRV+G+ ++ +    R+VL+    R   LTVD  L+         L+QVIGELR    R+ ++ GG     +L ARVAR VDG+DI LY++++RL+R F  K + +G
Sbjct:   14 LQFGQIKHIEEI----LATKDLNGQSVRVLGKVVEFDIPSNRVVLESPHGRTHRLTVDTRLLEAMPLATHSLFQVIGELR----RQEDQPGG----YVLEARVARNVDGLDIGLYDEALRLKRQFEAKAQQLG 134
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_024456823.1 (CST complex subunit TEN1 isoform X1 [Populus trichocarpa] >XP_024456824.1 CST complex subunit TEN1 isoform X1 [Populus trichocarpa] >PNT34537.1 hypothetical protein POPTR_005G021800v3 [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 5.100e-9
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 0 
Query:    6 MSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M+I+HGE+  L EL   P  P  K   SVRV G+  +   +    V+ D  +TL +D + + D  F +  +YQ IGEL    + E           +L+ARV R  DG+D+SLY QS++L R F   H
Sbjct:    4 MAIKHGELVTLEELN--PSSPFFKQGASVRVTGKLQEYTVETAIAVVADGNATLKIDTQHLRDISFRIGSVYQFIGELLIQPDSEA----------ILQARVGRIADGIDLSLYHQSLQLLRQFQADH 119
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_024456825.1 (CST complex subunit TEN1 isoform X2 [Populus trichocarpa] >PNT34536.1 hypothetical protein POPTR_005G021800v3 [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 5.100e-9
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 0 
Query:    6 MSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M+I+HGE+  L EL   P  P  K   SVRV G+  +   +    V+ D  +TL +D + + D  F +  +YQ IGEL    + E           +L+ARV R  DG+D+SLY QS++L R F   H
Sbjct:    1 MAIKHGELVTLEELN--PSSPFFKQGASVRVTGKLQEYTVETAIAVVADGNATLKIDTQHLRDISFRIGSVYQFIGELLIQPDSEA----------ILQARVGRIADGIDLSLYHQSLQLLRQFQADH 116
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_011036911.1 (PREDICTED: uncharacterized protein LOC105134261 isoform X1 [Populus euphratica])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:    6 MSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M+I+HGE+  L EL   P  P  K   SVRV G+  +   +    V+ D  +TL +D + + D  F M  +YQ IGEL    + E           +L+ARV R  DG+D+SLY QS++L R     H
Sbjct:   88 MAIKHGELVTLEELN--PSSPFFKQGASVRVTGKLQQYTVETAIAVVADGNATLKIDTQHLRDISFRMGSVYQFIGELLIQPDSEA----------ILQARVGRIADGIDLSLYPQSLQLLRQVQADH 203
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_011036912.1 (PREDICTED: uncharacterized protein LOC105134261 isoform X2 [Populus euphratica])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:    6 MSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M+I+HGE+  L EL   P  P  K   SVRV G+  +   +    V+ D  +TL +D + + D  F M  +YQ IGEL    + E           +L+ARV R  DG+D+SLY QS++L R     H
Sbjct:   74 MAIKHGELVTLEELN--PSSPFFKQGASVRVTGKLQQYTVETAIAVVADGNATLKIDTQHLRDISFRMGSVYQFIGELLIQPDSEA----------ILQARVGRIADGIDLSLYPQSLQLLRQVQADH 189
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_011036913.1 (PREDICTED: uncharacterized protein LOC105134261 isoform X3 [Populus euphratica])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:    6 MSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M+I+HGE+  L EL   P  P  K   SVRV G+  +   +    V+ D  +TL +D + + D  F M  +YQ IGEL    + E           +L+ARV R  DG+D+SLY QS++L R     H
Sbjct:    1 MAIKHGELVTLEELN--PSSPFFKQGASVRVTGKLQQYTVETAIAVVADGNATLKIDTQHLRDISFRMGSVYQFIGELLIQPDSEA----------ILQARVGRIADGIDLSLYPQSLQLLRQVQADH 116
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: KDP44423.1 (hypothetical protein JCGZ_16256 [Jatropha curcas])

HSP 1 Score: 67.4 bits (163), Expect = 4.300e-8
Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = 0 
Query:    7 SIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            +I+HGE+  L +L   P  P  K   S+R+ G+  + + +    ++ D  + L +D + + +  F +  +YQ IGEL   S+ E          ++L+ARV R VDG+D+SLY QS++L R F   H
Sbjct:   94 AIKHGELVMLKDL--QPSSPFFKQGASLRITGKLQEYSVETAIAIIVDGNAILKIDTQHLRNLSFRIGSIYQFIGELHIQSDNE----------IILQARVGRNVDGIDLSLYNQSLQLLRQFQADH 208
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: XP_012092923.1 (CST complex subunit TEN1 [Jatropha curcas] >XP_012092935.1 CST complex subunit TEN1-like [Jatropha curcas] >XP_012092948.1 CST complex subunit TEN1 [Jatropha curcas] >KDP44431.1 hypothetical protein JCGZ_16264 [Jatropha curcas])

HSP 1 Score: 67.4 bits (163), Expect = 4.300e-8
Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = 0 
Query:    7 SIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            +I+HGE+  L +L   P  P  K   S+R+ G+  + + +    ++ D  + L +D + + +  F +  +YQ IGEL   S+ E          ++L+ARV R VDG+D+SLY QS++L R F   H
Sbjct:    5 AIKHGELVMLKDL--QPSSPFFKQGASLRITGKLQEYSVETAIAIIVDGNAILKIDTQHLRNLSFRIGSIYQFIGELHIQSDNE----------IILQARVGRNVDGIDLSLYNQSLQLLRQFQADH 119
[Close]
BLAST of NO02G02360 vs. NCBI_GenBank
Match: PKA58406.1 (hypothetical protein AXF42_Ash013912 [Apostasia shenzhenica])

HSP 1 Score: 67.0 bits (162), Expect = 5.700e-8
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 0 
Query:    7 SIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRRLLLRARVARAVDGMDISLYEQSVRLRRAF 130
            +IQ G +  L EL   P  P  K  +SVRV GR    + +    V+ D  + L++D + + D  F  D +YQ IGEL          +  +   +++ ARV R VDGMD++LY QS++LRR F
Sbjct:    5 AIQPGVLVALQELE--PSSPFFKEGQSVRVTGRLQSYSAETAIAVIVDGGANLSIDTKHLRDISFRTDSIYQFIGEL----------IIQHENHVVVEARVGRNVDGMDLNLYHQSIQLRRKF 115
The following BLAST results are available for this feature:
BLAST of NO02G02360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM30426.18.400e-3662.96uncharacterized protein Naga_100210g9 [Nannochloro... [more]
XP_004334810.12.100e-1036.84Hypothetical protein ACA1_093430 [Acanthamoeba cas... [more]
XP_024456823.15.100e-936.72CST complex subunit TEN1 isoform X1 [Populus trich... [more]
XP_024456825.15.100e-936.72CST complex subunit TEN1 isoform X2 [Populus trich... [more]
XP_011036911.11.500e-836.72PREDICTED: uncharacterized protein LOC105134261 is... [more]
XP_011036912.11.500e-836.72PREDICTED: uncharacterized protein LOC105134261 is... [more]
XP_011036913.11.500e-836.72PREDICTED: uncharacterized protein LOC105134261 is... [more]
KDP44423.14.300e-833.07hypothetical protein JCGZ_16256 [Jatropha curcas][more]
XP_012092923.14.300e-833.07CST complex subunit TEN1 [Jatropha curcas] >XP_012... [more]
PKA58406.15.700e-836.59hypothetical protein AXF42_Ash013912 [Apostasia sh... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006877NSK006877Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02360.1NO02G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627241gene_823Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g9gene238Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02360.1NO02G02360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02360 ID=NO02G02360|Name=NO02G02360|organism=Nannochloropsis oceanica|type=gene|length=453bp
ATGTCAGCCACGGAGATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCA
CGAGCTGGGCTCTTTGCCACTACCGCCGCAAGAAAAATACGAGCGTTCGG
TCCGGGTCGTGGGGCGGTGCATCAAAATTAACACGCAGCAGCGACGCATC
GTCCTCCAAGACCGGGCTTCCACGCTGACCGTGGACATTGAATTAATTTC
TGACCAATATTTTGTCATGGACGGGCTGTACCAGGTCATAGGGGAGCTTC
GGGAAGGGAGTGAGAGGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGG
CTTCTGCTGCGGGCGCGTGTGGCTCGGGCGGTGGATGGCATGGATATCTC
ATTGTATGAGCAGTCGGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATA
AGATGGTGGGAAAGCAAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGG
TGA
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protein sequence of NO02G02360.1

>NO02G02360.1-protein ID=NO02G02360.1-protein|Name=NO02G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSATEMSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRI
VLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRR
LLLRARVARAVDGMDISLYEQSVRLRRAFLEKHKMVGKQERVRNGAGEEW
*
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Synonyms
Publications