NO02G02360.1, NO02G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02360.1
Unique NameNO02G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length453
Alignment locationchr2:657302..657754 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:657302..657754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02360.1 vs.
Match: EWM30426.1 (uncharacterized protein Naga_100210g9 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 8.400e-36
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = 0 
Query:    1 MSATEMSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRIVLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGG--NGRRLLLRARVARAVDGMDISLYEQSVRLRRAFLEKH 134
            M++T+MSIQHGEI FLHEL   P P +   ERSVRV GRC+ ++T Q+R+++QDR++ LTV+IELI+DQ F +DGLYQ IGELRE  ER    +GG  +    +LRARVARAVDG+D+SLYEQSVRLRRAFLE+H
Sbjct:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELRE--ERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERH 133
The following BLAST results are available for this feature:
BLAST of NO02G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30426.18.400e-3662.96uncharacterized protein Naga_100210g9 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02360NO02G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02360.1NO02G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02360.1.cds1NO02G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02360.1 ID=NO02G02360.1|Name=NO02G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGTCAGCCACGGAGATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCA
CGAGCTGGGCTCTTTGCCACTACCGCCGCAAGAAAAATACGAGCGTTCGG
TCCGGGTCGTGGGGCGGTGCATCAAAATTAACACGCAGCAGCGACGCATC
GTCCTCCAAGACCGGGCTTCCACGCTGACCGTGGACATTGAATTAATTTC
TGACCAATATTTTGTCATGGACGGGCTGTACCAGGTCATAGGGGAGCTTC
GGGAAGGGAGTGAGAGGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGG
CTTCTGCTGCGGGCGCGTGTGGCTCGGGCGGTGGATGGCATGGATATCTC
ATTGTATGAGCAGTCGGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATA
AGATGGTGGGAAAGCAAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGG
TGA
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protein sequence of NO02G02360.1

>NO02G02360.1-protein ID=NO02G02360.1-protein|Name=NO02G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSATEMSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRI
VLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRR
LLLRARVARAVDGMDISLYEQSVRLRRAFLEKHKMVGKQERVRNGAGEEW
*
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mRNA from alignment at chr2:657302..657754+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02360.1 ID=NO02G02360.1|Name=NO02G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=453bp|location=Sequence derived from alignment at chr2:657302..657754+ (Nannochloropsis oceanica)
ATGTCAGCCACGGAGATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCA
CGAGCTGGGCTCTTTGCCACTACCGCCGCAAGAAAAATACGAGCGTTCGG
TCCGGGTCGTGGGGCGGTGCATCAAAATTAACACGCAGCAGCGACGCATC
GTCCTCCAAGACCGGGCTTCCACGCTGACCGTGGACATTGAATTAATTTC
TGACCAATATTTTGTCATGGACGGGCTGTACCAGGTCATAGGGGAGCTTC
GGGAAGGGAGTGAGAGGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGG
CTTCTGCTGCGGGCGCGTGTGGCTCGGGCGGTGGATGGCATGGATATCTC
ATTGTATGAGCAGTCGGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATA
AGATGGTGGGAAAGCAAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGG
TGA
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Coding sequence (CDS) from alignment at chr2:657302..657754+

>NO02G02360.1 ID=NO02G02360.1|Name=NO02G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr2:657302..657754+ (Nannochloropsis oceanica)
ATGTCAGCCACGGAGATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCA
CGAGCTGGGCTCTTTGCCACTACCGCCGCAAGAAAAATACGAGCGTTCGG
TCCGGGTCGTGGGGCGGTGCATCAAAATTAACACGCAGCAGCGACGCATC
GTCCTCCAAGACCGGGCTTCCACGCTGACCGTGGACATTGAATTAATTTC
TGACCAATATTTTGTCATGGACGGGCTGTACCAGGTCATAGGGGAGCTTC
GGGAAGGGAGTGAGAGGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGG
CTTCTGCTGCGGGCGCGTGTGGCTCGGGCGGTGGATGGCATGGATATCTC
ATTGTATGAGCAGTCGGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATA
AGATGGTGGGAAAGCAAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGG
TGA
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Synonyms
Publications