NO02G02060, NO02G02060 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02060
Unique Name	NO02G02060
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2574
Alignment location	chr2:587951..590524 +

Link to JBrowse

Properties


Property Name	Value
Description	Zinc finger ccch type domain-containing protein zfn-like 3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:587951..590524 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR000571	Znf_CCCH

Homology

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: EWM30456.1 (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana])

HSP 1 Score: 231.9 bits (590), Expect = 4.900e-57
Identity = 205/290 (70.69%), Postives = 214/290 (73.79%), Query Frame = 0

Query:   19 GEEQGEEDGMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSQLPQRPGEKECTFFLRTGRCQYGLRCKFHHPIEKVPGGMVALN 309
            G   GEEDG+G V YPQRPGE+ECQYYMKTGTCKYATKCKFHHPPDVTP+WGTVAPATDVTIGLNKESYPRRPGE QCTFFLKTGTCKYKMSCKFDHPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXX                                                               +QLPQRPGEKECTFFLRTGRCQYG RCKFHHP++K+ G ++ LN
Sbjct:    4 GHATGEEDGVGAVCYPQRPGELECQYYMKTGTCKYATKCKFHHPPDVTPTWGTVAPATDVTIGLNKESYPRRPGEQQCTFFLKTGTCKYKMSCKFDHPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAXXXXXXXXXXXXXXXXXXXXXXXRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPL---------------------------AQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLN 266

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: XP_015061691.1 (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Solanum pennellii])

HSP 1 Score: 113.6 bits (283), Expect = 1.900e-21
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+ P  YPQRPG+VEC +YMKTG CKY  KCKFHHP D + S  +V       + L     PRR G   C +++KTG CKY  SCKFDHPP
Sbjct:  380 GVLPPVYPQRPGQVECDFYMKTGECKYGEKCKFHHPLDRSASAVSVKDVQQPNVKLTLAGLPRREGAVLCPYYMKTGMCKYGASCKFDHPP 470

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: XP_015061692.1 (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Solanum pennellii])

HSP 1 Score: 113.6 bits (283), Expect = 1.900e-21
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+ P  YPQRPG+VEC +YMKTG CKY  KCKFHHP D + S  +V       + L     PRR G   C +++KTG CKY  SCKFDHPP
Sbjct:  378 GVLPPVYPQRPGQVECDFYMKTGECKYGEKCKFHHPLDRSASAVSVKDVQQPNVKLTLAGLPRREGAVLCPYYMKTGMCKYGASCKFDHPP 468

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: XP_022749304.1 (zinc finger CCCH domain-containing protein 37 isoform X4 [Durio zibethinus])

HSP 1 Score: 113.2 bits (282), Expect = 2.500e-21
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+ P  YPQRPG+ EC YYMKTG CK+  +CKFHHP D   S  T    +   + L    +PRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  269 GVAPTVYPQRPGQSECDYYMKTGECKFGDRCKFHHPVDRLAS--TTNETSQQAVKLTLAGFPRREGSVHCPYYMKTGTCKYGATCKFDHPP 357

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: PNT23415.1 (hypothetical protein POPTR_008G080300v3 [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 5.600e-21
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 0

Query:    1 MVEMNMEISGQDYPLYHGGEEQGEEDGMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            M  +N+ +      +Y   + +    G+GP  YPQRPG+ EC +YMKTG CK+   CKFHHP D   S  T       T+ L     PRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  204 MANLNLGVFSPAASIYQTIDPRLSTLGVGPTVYPQRPGQAECDFYMKTGECKFGETCKFHHPID--RSAPTAKQTEPQTVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP 318

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: PNT23414.1 (hypothetical protein POPTR_008G080300v3 [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 5.600e-21
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 0

Query:    1 MVEMNMEISGQDYPLYHGGEEQGEEDGMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            M  +N+ +      +Y   + +    G+GP  YPQRPG+ EC +YMKTG CK+   CKFHHP D   S  T       T+ L     PRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  216 MANLNLGVFSPAASIYQTIDPRLSTLGVGPTVYPQRPGQAECDFYMKTGECKFGETCKFHHPID--RSAPTAKQTEPQTVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP 330

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: OAY82780.1 (Zinc finger CCCH domain-containing protein 8 [Ananas comosus])

HSP 1 Score: 111.7 bits (278), Expect = 7.400e-21
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0

Query:   28 MGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATD----VTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            + P  YPQRPGEVEC YYMKTG CK+A +C+FHHP D        AP +D    + + L     PRR G T C+F++KTG CK+  +C+FDHPP
Sbjct:  375 LAPTVYPQRPGEVECDYYMKTGQCKFADRCRFHHPID------RAAPVSDAKQTLNVKLTLAGLPRREGATACSFYMKTGMCKFGSNCRFDHPP 462

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: EOY14329.1 (Floral homeotic protein isoform 5 [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 9.600e-21
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+ P  YPQRPG+ EC+YYMKTG CK+  +CKFHHP D + S       ++  + L     PRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  273 GVAPTVYPQRPGQTECEYYMKTGDCKFGDRCKFHHPIDRSVS--KTKQTSEQAVKLTLAGLPRREGGVHCPYYMKTGTCKYGATCKFDHPP 361

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: AAG51026.1 (zinc finger protein, putative, 5' partial; 146-2518, partial [Arabidopsis thaliana])

HSP 1 Score: 111.3 bits (277), Expect = 9.600e-21
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+   +YPQRPG+ EC YYMKTG CK+  +CKFHHP D   +    AP     + L+   YPRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  215 GVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAP-QQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPP 304

[Close]

BLAST of NO02G02060 vs. NCBI_GenBank
Match: OAP03191.1 (HUA1 [Arabidopsis thaliana])

HSP 1 Score: 111.3 bits (277), Expect = 9.600e-21
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   27 GMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPP 118
            G+   +YPQRPG+ EC YYMKTG CK+  +CKFHHP D   +    AP     + L+   YPRR G   C +++KTGTCKY  +CKFDHPP
Sbjct:  210 GVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAP-QQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPP 299

The following BLAST results are available for this feature:

BLAST of NO02G02060 vs. NCBI_GenBank

BLAST of NO02G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30456.1	4.900e-57	70.69	zinc finger ccch type domain-containing protein zf...	[more]
XP_015061691.1	1.900e-21	53.85	PREDICTED: zinc finger CCCH domain-containing prot...	[more]
XP_015061692.1	1.900e-21	53.85	PREDICTED: zinc finger CCCH domain-containing prot...	[more]
XP_022749304.1	2.500e-21	51.65	zinc finger CCCH domain-containing protein 37 isof...	[more]
PNT23415.1	5.600e-21	43.59	hypothetical protein POPTR_008G080300v3 [Populus t...	[more]
PNT23414.1	5.600e-21	43.59	hypothetical protein POPTR_008G080300v3 [Populus t...	[more]
OAY82780.1	7.400e-21	51.06	Zinc finger CCCH domain-containing protein 8 [Anan...	[more]
EOY14329.1	9.600e-21	50.55	Floral homeotic protein isoform 5 [Theobroma cacao...	[more]
AAG51026.1	9.600e-21	51.65	zinc finger protein, putative, 5' partial; 146-251...	[more]
OAP03191.1	9.600e-21	51.65	HUA1 [Arabidopsis thaliana]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL020	nonsL020	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR005	ngnoR005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR002	ngnoR002	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006833	NSK006833	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G02060.1	NO02G02060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667790	gene_792	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100100g23	gene207	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G02060.1	NO02G02060.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G02060 ID=NO02G02060|Name=NO02G02060|organism=Nannochloropsis oceanica|type=gene|length=2574bp
ACAGGCAGGCGGCCTGTGAGGGACATGGTGGAAATGAATATGGAAATTTC
AGGCCAGGATTATCCCTTGTATCACGGTGGGGAGGAGCAAGgtaaggcgg
gggacccaaactggcaaaatgtacggtcgttgatgtggataccgggcgag
gcgctctttgttgtgctcttctcatcccttggctttcccatgtatatata
tacagGGGAGGAAGACGGCATGGGACCTGTCTCCTACCCGCAGCGACCGG
GGGAAGTCGAATGTCAGTACTATATGAAGACGGGGACGTGCAAgtaagtc
gtttcggacaattttggggtggatgatggcctggctgagagcgaaggatg
aagaattccacgaagagcaccctgtgggctctcttctgtgaaacagagtg
ttaaaatgcgcgcggagaagggagaggttgttggacaagcgcagagtgtg
gggtaaaatttcaccgggagtgaccacccctccccttgctaaacggatct
cctcccttcctttttctcattttactttgcctcagGTATGCAACAAAGTG
CAAGTTTCACCACCCGCCAGATGTGACACCTAGTTGGGGTACGGTGGCGC
CGGCGACGGACGTGACGATCGGATTGAACAAGGAGgtgagatccttactt
tagacctcatttacgtgatgagaaaggacaagaggttgtgtgggagagaa
gcgtggacacaactaaaaattaacagggaaattatagggagggtcaatag
tgatgctgaagctgacgctgctcatttgtggatgtacagggggggaaaac
atcgggagaaagcgaggcatgacggagaatgaaaacgagggacgggagag
atggagggaaggagaaagagaaggaagaaaagcgccgtgcgctcgtcgtc
gactcaatttatcaaacaatttttcatttacaaatcaaaacagTCCTACC
CACGGCGGCCGGGGGAGACGCAGTGCACGTTTTTCCTCAAAACGGGCACA
TGCAAATATAAGATGTCCTGCAAgtgagtgtgtactggggcgtgtggggg
agggagacagggaaacatcgctggtacgagtgccattttaagacggaaaa
aaacgagaagggccgagggtcatggtggataatgtggtgcgaatctggcg
ctaaatctgtcctgttgctgccatcactcatcctccctccctcccttctt
ccctccctgcctccgcctttagATTCGACCACCCCCCTGAAGCAATTCAA
CAAACCCTCCAGCTGCAATCCACGCCCTATCCATTGCGTCCCGGGGAGCT
TCAGTGCGCCTACTACCTGAAGACAGGGAAATGCAAATTTGGCGCGACCT
GCCGGTTTGATCACCCGCCCATGGCCCCCGAACAAGCTGCAGCGCTTGCG
GCAGCAGCCGGCCAGTACGCAGCTGCTGCAGCAGCAGCGGCTGCTGGGGG
TGTGGTAGGGAATGGAGTTGGAGTAGGAGGTAGTGGGCACGTACCACCGC
CGGGAGGAGTGGGAGGGGCGGGGGGGCATGCGGCCCATGTGAGGGGGGGG
CCAATGGGGTATTATGCGCCTCACGAGGGAGGGGCCGGGGGAGGCATGAT
GGGAATGGTGGCCATGCCTGGTGGGCAGCATATGGTGGGGATGGCGGGGT
TCGCCCCCCCTCCACCTTCTTCCCATTCGTCCCAGCTCCCGCAGCGGCCG
GGGGAGAAAGAGTGCACGTTTTTCCTGCGGACTGGCCGATGCCAGTATGG
TCTGCGGTGTAAGTTCCACCATCCCATCGAGAAGGTGCCCGGGGGCATGG
TAGCGCTGAATGGGATGGTCGGTGCCCCCCCCCTCCCTCACGCCCCACCT
CATCCCCACATGGGACCTGCTTTTGCTCACCCTGGTGTGGATGGCTTGTA
CCCGTCGCCGTACGGCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTCCGC
ATGGGCACCATGTCCAGCAGATGCGAGGGGCAGGGGTTGGGGGAGGGAAT
GGTGGTATTGGAGGAGCAGGGGGAGGGGGGGATGGACAGTTGCCGTCGAG
GCCGGGGCAGGAGGCATGTTCGTTTTATTTGAGAACGGGCAAATGCTCTT
ATGGCTCTGCTTGTCGATTCGATCACCCAAGAGTTGGAGGAGGGTTGTCT
AGGGAGACGAGTGTGGGGGAGGGAGGGAGAGATGGTGGAAGGGGGGAGGG
TGGACAGGCCGAGAATGGCGGGAGGGGGGCGGGGAGGGAGGGAGGGAGGG
AGGGGGGAGCGGGGGCAGGTAATGGAGGGGGGGATGGAGGGCAGGGTGGC
TACTCGTACCAGCAGGAGGGCGTGCACATGTATGGAGGTAGCCAGCAGGG
GGGCTATGGCGGAGGGGGCCCAGGAGGGTACATGGGCGAGGGAGGGGTGG
GGGGAGGAGGAGGGGGTGGAAATGGACATTATCCGGGGGCCGAGGCGTAC
CAGCAGGCGGCGTTTATGGGCTACCCGCCAGTACACCACCACCAGTACGT
GGCTCAGACCCAGCAGGCCGTGTACTCGAACTATCGGCAGGCGTCGTAGG
TCGTGGGGAGGGAGGAAGGGAGGG

protein sequence of NO02G02060.1

>NO02G02060.1-protein ID=NO02G02060.1-protein|Name=NO02G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MVEMNMEISGQDYPLYHGGEEQGEEDGMGPVSYPQRPGEVECQYYMKTGT
CKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFL
KTGTCKYKMSCKFDHPPEAIQQTLQLQSTPYPLRPGELQCAYYLKTGKCK
FGATCRFDHPPMAPEQAAALAAAAGQYAAAAAAAAAGGVVGNGVGVGGSG
HVPPPGGVGGAGGHAAHVRGGPMGYYAPHEGGAGGGMMGMVAMPGGQHMV
GMAGFAPPPPSSHSSQLPQRPGEKECTFFLRTGRCQYGLRCKFHHPIEKV
PGGMVALNGMVGAPPLPHAPPHPHMGPAFAHPGVDGLYPSPYGLPPSLPP
SLPPHGHHVQQMRGAGVGGGNGGIGGAGGGGDGQLPSRPGQEACSFYLRT
GKCSYGSACRFDHPRVGGGLSRETSVGEGGRDGGRGEGGQAENGGRGAGR
EGGREGGAGAGNGGGDGGQGGYSYQQEGVHMYGGSQQGGYGGGGPGGYMG
EGGVGGGGGGGNGHYPGAEAYQQAAFMGYPPVHHHQYVAQTQQAVYSNYR
QAS*

Synonyms

Publications