NO02G02060.1, NO02G02060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02060.1
Unique Name	NO02G02060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1711
Alignment location	chr2:587951..590524 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:587951..590524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G02060.1 vs.
Match: EWM30456.1 (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 7.200e-117
Identity = 236/367 (64.31%), Postives = 260/367 (70.84%), Query Frame = 0

Query:   19 GEEQGEEDGMGPVSYPQRPGEVECQYYMKTGTCKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFLKTGTCKYKMSCKFDHPPEAIQQTLQLQSTPYPLRPGELQCAYYLKTGKCKFGATCRFDHPPMAPEQAAALAAAAGQYAAAAAAAAAGGVVGNGVGVGGSGHVPPPGGVGGAGGHAAHVRGG-PMGYYAPHEGGAGGGMMGMVAMPGGQHMVGMAGFAPPPPSSHSSQLPQRPGEKECTFFLRTGRCQYGLRCKFHHPIEKVPGGMVALNGMVGAPPLPHAPPHPHMGPAFAHPGVDGLYPSPYGLPPSLPPSLPPHGHHVQQMRGAGVGGGNGGIGGAGGGGDGQ 385
            G   GEEDG+G V YPQRPGE+ECQYYMKTGTCKYATKCKFHHPPDVTP+WGTVAPATDVTIGLNKESYPRRPGE QCTFFLKTGTCKYKMSCKFDHPPEAIQQTLQLQ+TPYP+RPGELQC+YYLKTGKCKFGATCRFDHP MAPE A AL  AAGQYA A  A    G VG                 G AG HA    G   MGYY   EG AGGGM+ M+ +PG Q +      AP       +QLPQRPGEKECTFFLRTGRCQYG RCKFHHP++K+ G ++ LNG+ G P L H        P F HPG++GLY SPY LP S P  L   GH         +  G GG+G +G GG+G+
Sbjct:    4 GHATGEEDGVGAVCYPQRPGELECQYYMKTGTCKYATKCKFHHPPDVTPTWGTVAPATDVTIGLNKESYPRRPGEQQCTFFLKTGTCKYKMSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATAL--AAGQYAGAGGAGGMNGHVG-----------------GAAGMHAMLAMGRVGMGYY---EGTAGGGMLDMMGLPGQQMLANFGAGAP------LAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLY-SPYALPASGPAGLSHAGH-------LAMRAGAGGLGSSGAGGEGK 334

The following BLAST results are available for this feature:

BLAST of NO02G02060.1 vs.

BLAST of NO02G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30456.1	7.200e-117	64.31	zinc finger ccch type domain-containing protein zf...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G02060	NO02G02060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02060.1	NO02G02060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02060.1.cds1	NO02G02060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02060.1.cds2	NO02G02060.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02060.1.cds3	NO02G02060.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02060.1.cds4	NO02G02060.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02060.1.cds5	NO02G02060.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:587951..590524+
coding sequence from alignment at chr2:587951..590524+

mRNA sequence

>NO02G02060.1 ID=NO02G02060.1|Name=NO02G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
ACAGGCAGGCGGCCTGTGAGGGACATGGTGGAAATGAATATGGAAATTTC
AGGCCAGGATTATCCCTTGTATCACGGTGGGGAGGAGCAAGGGGAGGAAG
ACGGCATGGGACCTGTCTCCTACCCGCAGCGACCGGGGGAAGTCGAATGT
CAGTACTATATGAAGACGGGGACGTGCAAGTATGCAACAAAGTGCAAGTT
TCACCACCCGCCAGATGTGACACCTAGTTGGGGTACGGTGGCGCCGGCGA
CGGACGTGACGATCGGATTGAACAAGGAGTCCTACCCACGGCGGCCGGGG
GAGACGCAGTGCACGTTTTTCCTCAAAACGGGCACATGCAAATATAAGAT
GTCCTGCAAATTCGACCACCCCCCTGAAGCAATTCAACAAACCCTCCAGC
TGCAATCCACGCCCTATCCATTGCGTCCCGGGGAGCTTCAGTGCGCCTAC
TACCTGAAGACAGGGAAATGCAAATTTGGCGCGACCTGCCGGTTTGATCA
CCCGCCCATGGCCCCCGAACAAGCTGCAGCGCTTGCGGCAGCAGCCGGCC
AGTACGCAGCTGCTGCAGCAGCAGCGGCTGCTGGGGGTGTGGTAGGGAAT
GGAGTTGGAGTAGGAGGTAGTGGGCACGTACCACCGCCGGGAGGAGTGGG
AGGGGCGGGGGGGCATGCGGCCCATGTGAGGGGGGGGCCAATGGGGTATT
ATGCGCCTCACGAGGGAGGGGCCGGGGGAGGCATGATGGGAATGGTGGCC
ATGCCTGGTGGGCAGCATATGGTGGGGATGGCGGGGTTCGCCCCCCCTCC
ACCTTCTTCCCATTCGTCCCAGCTCCCGCAGCGGCCGGGGGAGAAAGAGT
GCACGTTTTTCCTGCGGACTGGCCGATGCCAGTATGGTCTGCGGTGTAAG
TTCCACCATCCCATCGAGAAGGTGCCCGGGGGCATGGTAGCGCTGAATGG
GATGGTCGGTGCCCCCCCCCTCCCTCACGCCCCACCTCATCCCCACATGG
GACCTGCTTTTGCTCACCCTGGTGTGGATGGCTTGTACCCGTCGCCGTAC
GGCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTCCGCATGGGCACCATGT
CCAGCAGATGCGAGGGGCAGGGGTTGGGGGAGGGAATGGTGGTATTGGAG
GAGCAGGGGGAGGGGGGGATGGACAGTTGCCGTCGAGGCCGGGGCAGGAG
GCATGTTCGTTTTATTTGAGAACGGGCAAATGCTCTTATGGCTCTGCTTG
TCGATTCGATCACCCAAGAGTTGGAGGAGGGTTGTCTAGGGAGACGAGTG
TGGGGGAGGGAGGGAGAGATGGTGGAAGGGGGGAGGGTGGACAGGCCGAG
AATGGCGGGAGGGGGGCGGGGAGGGAGGGAGGGAGGGAGGGGGGAGCGGG
GGCAGGTAATGGAGGGGGGGATGGAGGGCAGGGTGGCTACTCGTACCAGC
AGGAGGGCGTGCACATGTATGGAGGTAGCCAGCAGGGGGGCTATGGCGGA
GGGGGCCCAGGAGGGTACATGGGCGAGGGAGGGGTGGGGGGAGGAGGAGG
GGGTGGAAATGGACATTATCCGGGGGCCGAGGCGTACCAGCAGGCGGCGT
TTATGGGCTACCCGCCAGTACACCACCACCAGTACGTGGCTCAGACCCAG
CAGGCCGTGTACTCGAACTATCGGCAGGCGTCGTAGGTCGTGGGGAGGGA
GGAAGGGAGGG

protein sequence of NO02G02060.1

>NO02G02060.1-protein ID=NO02G02060.1-protein|Name=NO02G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MVEMNMEISGQDYPLYHGGEEQGEEDGMGPVSYPQRPGEVECQYYMKTGT
CKYATKCKFHHPPDVTPSWGTVAPATDVTIGLNKESYPRRPGETQCTFFL
KTGTCKYKMSCKFDHPPEAIQQTLQLQSTPYPLRPGELQCAYYLKTGKCK
FGATCRFDHPPMAPEQAAALAAAAGQYAAAAAAAAAGGVVGNGVGVGGSG
HVPPPGGVGGAGGHAAHVRGGPMGYYAPHEGGAGGGMMGMVAMPGGQHMV
GMAGFAPPPPSSHSSQLPQRPGEKECTFFLRTGRCQYGLRCKFHHPIEKV
PGGMVALNGMVGAPPLPHAPPHPHMGPAFAHPGVDGLYPSPYGLPPSLPP
SLPPHGHHVQQMRGAGVGGGNGGIGGAGGGGDGQLPSRPGQEACSFYLRT
GKCSYGSACRFDHPRVGGGLSRETSVGEGGRDGGRGEGGQAENGGRGAGR
EGGREGGAGAGNGGGDGGQGGYSYQQEGVHMYGGSQQGGYGGGGPGGYMG
EGGVGGGGGGGNGHYPGAEAYQQAAFMGYPPVHHHQYVAQTQQAVYSNYR
QAS*

mRNA from alignment at chr2:587951..590524+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G02060.1 ID=NO02G02060.1|Name=NO02G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at chr2:587951..590524+ (Nannochloropsis oceanica)
ACAGGCAGGCGGCCTGTGAGGGACATGGTGGAAATGAATATGGAAATTTC
AGGCCAGGATTATCCCTTGTATCACGGTGGGGAGGAGCAAGGTAAGGCGG
GGGACCCAAACTGGCAAAATGTACGGTCGTTGATGTGGATACCGGGCGAG
GCGCTCTTTGTTGTGCTCTTCTCATCCCTTGGCTTTCCCATGTATATATA
TACAGGGGAGGAAGACGGCATGGGACCTGTCTCCTACCCGCAGCGACCGG
GGGAAGTCGAATGTCAGTACTATATGAAGACGGGGACGTGCAAGTAAGTC
GTTTCGGACAATTTTGGGGTGGATGATGGCCTGGCTGAGAGCGAAGGATG
AAGAATTCCACGAAGAGCACCCTGTGGGCTCTCTTCTGTGAAACAGAGTG
TTAAAATGCGCGCGGAGAAGGGAGAGGTTGTTGGACAAGCGCAGAGTGTG
GGGTAAAATTTCACCGGGAGTGACCACCCCTCCCCTTGCTAAACGGATCT
CCTCCCTTCCTTTTTCTCATTTTACTTTGCCTCAGGTATGCAACAAAGTG
CAAGTTTCACCACCCGCCAGATGTGACACCTAGTTGGGGTACGGTGGCGC
CGGCGACGGACGTGACGATCGGATTGAACAAGGAGGTGAGATCCTTACTT
TAGACCTCATTTACGTGATGAGAAAGGACAAGAGGTTGTGTGGGAGAGAA
GCGTGGACACAACTAAAAATTAACAGGGAAATTATAGGGAGGGTCAATAG
TGATGCTGAAGCTGACGCTGCTCATTTGTGGATGTACAGGGGGGGAAAAC
ATCGGGAGAAAGCGAGGCATGACGGAGAATGAAAACGAGGGACGGGAGAG
ATGGAGGGAAGGAGAAAGAGAAGGAAGAAAAGCGCCGTGCGCTCGTCGTC
GACTCAATTTATCAAACAATTTTTCATTTACAAATCAAAACAGTCCTACC
CACGGCGGCCGGGGGAGACGCAGTGCACGTTTTTCCTCAAAACGGGCACA
TGCAAATATAAGATGTCCTGCAAGTGAGTGTGTACTGGGGCGTGTGGGGG
AGGGAGACAGGGAAACATCGCTGGTACGAGTGCCATTTTAAGACGGAAAA
AAACGAGAAGGGCCGAGGGTCATGGTGGATAATGTGGTGCGAATCTGGCG
CTAAATCTGTCCTGTTGCTGCCATCACTCATCCTCCCTCCCTCCCTTCTT
CCCTCCCTGCCTCCGCCTTTAGATTCGACCACCCCCCTGAAGCAATTCAA
CAAACCCTCCAGCTGCAATCCACGCCCTATCCATTGCGTCCCGGGGAGCT
TCAGTGCGCCTACTACCTGAAGACAGGGAAATGCAAATTTGGCGCGACCT
GCCGGTTTGATCACCCGCCCATGGCCCCCGAACAAGCTGCAGCGCTTGCG
GCAGCAGCCGGCCAGTACGCAGCTGCTGCAGCAGCAGCGGCTGCTGGGGG
TGTGGTAGGGAATGGAGTTGGAGTAGGAGGTAGTGGGCACGTACCACCGC
CGGGAGGAGTGGGAGGGGCGGGGGGGCATGCGGCCCATGTGAGGGGGGGG
CCAATGGGGTATTATGCGCCTCACGAGGGAGGGGCCGGGGGAGGCATGAT
GGGAATGGTGGCCATGCCTGGTGGGCAGCATATGGTGGGGATGGCGGGGT
TCGCCCCCCCTCCACCTTCTTCCCATTCGTCCCAGCTCCCGCAGCGGCCG
GGGGAGAAAGAGTGCACGTTTTTCCTGCGGACTGGCCGATGCCAGTATGG
TCTGCGGTGTAAGTTCCACCATCCCATCGAGAAGGTGCCCGGGGGCATGG
TAGCGCTGAATGGGATGGTCGGTGCCCCCCCCCTCCCTCACGCCCCACCT
CATCCCCACATGGGACCTGCTTTTGCTCACCCTGGTGTGGATGGCTTGTA
CCCGTCGCCGTACGGCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTCCGC
ATGGGCACCATGTCCAGCAGATGCGAGGGGCAGGGGTTGGGGGAGGGAAT
GGTGGTATTGGAGGAGCAGGGGGAGGGGGGGATGGACAGTTGCCGTCGAG
GCCGGGGCAGGAGGCATGTTCGTTTTATTTGAGAACGGGCAAATGCTCTT
ATGGCTCTGCTTGTCGATTCGATCACCCAAGAGTTGGAGGAGGGTTGTCT
AGGGAGACGAGTGTGGGGGAGGGAGGGAGAGATGGTGGAAGGGGGGAGGG
TGGACAGGCCGAGAATGGCGGGAGGGGGGCGGGGAGGGAGGGAGGGAGGG
AGGGGGGAGCGGGGGCAGGTAATGGAGGGGGGGATGGAGGGCAGGGTGGC
TACTCGTACCAGCAGGAGGGCGTGCACATGTATGGAGGTAGCCAGCAGGG
GGGCTATGGCGGAGGGGGCCCAGGAGGGTACATGGGCGAGGGAGGGGTGG
GGGGAGGAGGAGGGGGTGGAAATGGACATTATCCGGGGGCCGAGGCGTAC
CAGCAGGCGGCGTTTATGGGCTACCCGCCAGTACACCACCACCAGTACGT
GGCTCAGACCCAGCAGGCCGTGTACTCGAACTATCGGCAGGCGTCGTAGG
TCGTGGGGAGGGAGGAAGGGAGGG

Coding sequence (CDS) from alignment at chr2:587951..590524+

>NO02G02060.1 ID=NO02G02060.1|Name=NO02G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr2:587951..590524+ (Nannochloropsis oceanica)
ATGGTGGAAATGAATATGGAAATTTCAGGCCAGGATTATCCCTTGTATCA
CGGTGGGGAGGAGCAAGGGGAGGAAGACGGCATGGGACCTGTCTCCTACC
CGCAGCGACCGGGGGAAGTCGAATGTCAGTACTATATGAAGACGGGGACG
TGCAAGTATGCAACAAAGTGCAAGTTTCACCACCCGCCAGATGTGACACC
TAGTTGGGGTACGGTGGCGCCGGCGACGGACGTGACGATCGGATTGAACA
AGGAGTCCTACCCACGGCGGCCGGGGGAGACGCAGTGCACGTTTTTCCTC
AAAACGGGCACATGCAAATATAAGATGTCCTGCAAATTCGACCACCCCCC
TGAAGCAATTCAACAAACCCTCCAGCTGCAATCCACGCCCTATCCATTGC
GTCCCGGGGAGCTTCAGTGCGCCTACTACCTGAAGACAGGGAAATGCAAA
TTTGGCGCGACCTGCCGGTTTGATCACCCGCCCATGGCCCCCGAACAAGC
TGCAGCGCTTGCGGCAGCAGCCGGCCAGTACGCAGCTGCTGCAGCAGCAG
CGGCTGCTGGGGGTGTGGTAGGGAATGGAGTTGGAGTAGGAGGTAGTGGG
CACGTACCACCGCCGGGAGGAGTGGGAGGGGCGGGGGGGCATGCGGCCCA
TGTGAGGGGGGGGCCAATGGGGTATTATGCGCCTCACGAGGGAGGGGCCG
GGGGAGGCATGATGGGAATGGTGGCCATGCCTGGTGGGCAGCATATGGTG
GGGATGGCGGGGTTCGCCCCCCCTCCACCTTCTTCCCATTCGTCCCAGCT
CCCGCAGCGGCCGGGGGAGAAAGAGTGCACGTTTTTCCTGCGGACTGGCC
GATGCCAGTATGGTCTGCGGTGTAAGTTCCACCATCCCATCGAGAAGGTG
CCCGGGGGCATGGTAGCGCTGAATGGGATGGTCGGTGCCCCCCCCCTCCC
TCACGCCCCACCTCATCCCCACATGGGACCTGCTTTTGCTCACCCTGGTG
TGGATGGCTTGTACCCGTCGCCGTACGGCCTCCCTCCCTCGCTCCCTCCC
TCCCTCCCTCCGCATGGGCACCATGTCCAGCAGATGCGAGGGGCAGGGGT
TGGGGGAGGGAATGGTGGTATTGGAGGAGCAGGGGGAGGGGGGGATGGAC
AGTTGCCGTCGAGGCCGGGGCAGGAGGCATGTTCGTTTTATTTGAGAACG
GGCAAATGCTCTTATGGCTCTGCTTGTCGATTCGATCACCCAAGAGTTGG
AGGAGGGTTGTCTAGGGAGACGAGTGTGGGGGAGGGAGGGAGAGATGGTG
GAAGGGGGGAGGGTGGACAGGCCGAGAATGGCGGGAGGGGGGCGGGGAGG
GAGGGAGGGAGGGAGGGGGGAGCGGGGGCAGGTAATGGAGGGGGGGATGG
AGGGCAGGGTGGCTACTCGTACCAGCAGGAGGGCGTGCACATGTATGGAG
GTAGCCAGCAGGGGGGCTATGGCGGAGGGGGCCCAGGAGGGTACATGGGC
GAGGGAGGGGTGGGGGGAGGAGGAGGGGGTGGAAATGGACATTATCCGGG
GGCCGAGGCGTACCAGCAGGCGGCGTTTATGGGCTACCCGCCAGTACACC
ACCACCAGTACGTGGCTCAGACCCAGCAGGCCGTGTACTCGAACTATCGG
CAGGCGTCGTAG

Synonyms

Publications