NO02G01740, NO02G01740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G01740 vs. NCBI_GenBank
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 395.2 bits (1014), Expect = 1.400e-106 Identity = 194/206 (94.17%), Postives = 203/206 (98.54%), Query Frame = 0 Query: 33 MKTAFAFLALLGVSTAFMPSAPRMSRGRSMRMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 MKTAFAFLALLGVSTAFMP+APRM+RGRS+RMAVNEMIGSDVET GVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAAL+QV++ERPVAFWQIFL +GAIELTIGKQDTANRAPGDVGFGAAFIPDDA+DFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGH+SPFGDGQG F Sbjct: 1 MKTAFAFLALLGVSTAFMPTAPRMTRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206
BLAST of NO02G01740 vs. NCBI_GenBank
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 243.4 bits (620), Expect = 7.000e-61 Identity = 120/176 (68.18%), Postives = 143/176 (81.25%), Query Frame = 0 Query: 64 MAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVG-FGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 M+ ++MIG DVETGG+FDPLG +KDE SLY+ R +ELKHGRVAMLACLGTLVQS+ HLPD+VFSNPRPL AL Q+ +ERP+A QI + + IE+T GKQD APG +G FG AF P+ + AA+QLKELKNGRLAM+AIIGQ+VQE LTGQGPIEQ+ GH SPFGDGQG+F Sbjct: 1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGLF 175
BLAST of NO02G01740 vs. NCBI_GenBank
Match: EWM28183.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 234.6 bits (597), Expect = 3.300e-58 Identity = 118/211 (55.92%), Postives = 148/211 (70.14%), Query Frame = 0 Query: 33 MKTAFAFLALLGVSTAFMPSAPRMSRGRSMR-----MAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 M A L LL + AF+P+ + R +V+++IG+D ETGG++DPLGL+++E SL + R ELKHGRVAM A LG VQ YHLPD VFSNPRPLAAL QV+ +RP A WQI + LG IE T G+Q +RAPGD+ FG++FIP +F LQLKELKNGRLAM+A +G +QE LTGQGP+EQ+L GH +PFGDGQG F Sbjct: 1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQ-KEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQGFF 210
BLAST of NO02G01740 vs. NCBI_GenBank
Match: EWM25765.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 217.6 bits (553), Expect = 4.100e-53 Identity = 117/210 (55.71%), Postives = 144/210 (68.57%), Query Frame = 0 Query: 33 MKTAFAFLALLGVSTAFMPSAPRMSRGRSM-RMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFW-QIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIP--DDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 MK+A + L V++AF+P+AP+MSR R M RMAVN+++GSDVETGGV+DPL +KDE SLYR R +ELKHGR+AMLA LG V FYH + +P + E P W QI T+G IELT+GKQDT N+APGD+GFG F P +D + FA LQLKELKNGRLAM+ G +QE +TGQ EQ+ H SPFGDGQG F Sbjct: 1 MKSAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPG-----IKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205
BLAST of NO02G01740 vs. NCBI_GenBank
Match: CEM02552.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 211.1 bits (536), Expect = 3.900e-51 Identity = 121/214 (56.54%), Postives = 146/214 (68.22%), Query Frame = 0 Query: 33 MKTAFAFLALLGVSTAFMPSAP------RMSRGRSM-RMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFW-QIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 M F AL+ ++AF+PSAP SR R+ RMAV +MIG+DVET GV+DPLG +KDE+SLYR R +ELKHGRVAMLA LG V +H + P L A+SQV P A W QI T+ AIEL+IGKQD NRAPGD+GFG +D +FA LQLKE+KNGRLAM+AI G VQE +TGQ ++QL EGH SPFGDGQG+F Sbjct: 1 MMKLMVFAALIAAASAFVPSAPLRGLDKLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEP-GLKAISQV----PSAGWLQILATIAAIELSIGKQDFENRAPGDLGFGINPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209
BLAST of NO02G01740 vs. NCBI_GenBank
Match: XP_005853581.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU22777.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 210.7 bits (535), Expect = 5.000e-51 Identity = 108/197 (54.82%), Postives = 137/197 (69.54%), Query Frame = 0 Query: 33 MKTAFAFLALLGVSTAFMPSAPRMSRGRSMR-----MAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLL 225 M A L LL + AF+P+ + R +V+++IG+D ETGG++DPLGL+++E SL + R ELKHGRVAM A LG VQ YHLPD VFSNPRPLAAL QV+ +RP A WQI + LG IE T G+Q +RAPGD+ FG++FIP +F LQLKELKNGRLAM+A +G +QE LTGQGP+EQ+L Sbjct: 1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQ-KEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 196
BLAST of NO02G01740 vs. NCBI_GenBank
Match: CEM27246.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 208.4 bits (529), Expect = 2.500e-50 Identity = 112/197 (56.85%), Postives = 138/197 (70.05%), Query Frame = 0 Query: 44 GVSTAFMPSAP-------RMSRGRSMRMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSF-YHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVG-FGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPF 232 G AF+PSAP R R + +M+V EMIG+DVETGGVFDPL ++DEASL+R R +ELKHGR+AMLACLG VQS HLPD VFS PRPL+AL++V ERP A QI + AIEL G+QD N+APGD+G FG +F D ++F QL+ELKNGRLAM+ I+G VQE LTGQ EQ+ G+ +PF Sbjct: 17 GEEAAFVPSAPLRSLPTRRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213
BLAST of NO02G01740 vs. NCBI_GenBank
Match: CEM11606.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 199.9 bits (507), Expect = 8.900e-48 Identity = 111/215 (51.63%), Postives = 139/215 (64.65%), Query Frame = 0 Query: 33 MKTAFAFLALLGVST-AFMP----SAPRMSRGRSMRM----AVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 MK+ +ALL V AF+P SRG + AV+++ G+DVETGGV+DPLGL+++E +L R ELKHGRV M+A LG +VQ+++ LPD VF+NPRPL A+ QV+ +RP A QI L +GA EL +Q + FGAAF P D F LQ KELKNGRLAM+ I G VQE LTGQGP+EQ+ GH SPFGDGQG F Sbjct: 1 MKSVICAIALLVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFGDGQGYF 215
BLAST of NO02G01740 vs. NCBI_GenBank
Match: ADD60136.1 (light harvesting complex protein 3, partial [Vaucheria litorea] >ADD60137.1 light harvesting complex protein 3, partial [Elysia chlorotica]) HSP 1 Score: 193.7 bits (491), Expect = 6.400e-46 Identity = 94/144 (65.28%), Postives = 113/144 (78.47%), Query Frame = 0 Query: 80 FDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVG-FGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQ 223 +DPLG +KDEASL+R R++ELKHGR+ MLA LG VQ+ HLPD VFSNPRP+ AL QVF ERP+A WQI L +GAIEL+IGKQD N+APGD+G FG P D ++ +QL+ELKNGRLAMMAI+G VQE LT QGP+EQ Sbjct: 1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPDPVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
BLAST of NO02G01740 vs. NCBI_GenBank
Match: CBJ30555.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 193.0 bits (489), Expect = 1.100e-45 Identity = 119/221 (53.85%), Postives = 147/221 (66.52%), Query Frame = 0 Query: 33 MKTAFAFLAL-LGVSTAFM-PSA--------PRMSRGRSM-RMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFW-QIFLTLGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239 MK LAL L +TAF+ PSA P+ + +M +MAVN+M+G+DVET GVFDPLG KD+ASL+R R +ELKHGRVAMLA G L +H + +P L AL E P+A W QI + +ELT+GKQD N+APG++G FG A+ PD+ F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ IEQL GH SPFGDGQG F Sbjct: 1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSP-GLKAL----GELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216 The following BLAST results are available for this feature:
BLAST of NO02G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G01740 ID=NO02G01740|Name=NO02G01740|organism=Nannochloropsis oceanica|type=gene|length=1187bpback to top protein sequence of NO02G01740.1 >NO02G01740.1-protein ID=NO02G01740.1-protein|Name=NO02G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bpback to top Synonyms
Publications
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