NO02G01740.1, NO02G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01740.1
Unique NameNO02G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1187
Alignment locationchr2:510073..511259 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:510073..511259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01740.1 vs.
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 1.400e-106
Identity = 194/206 (94.17%), Postives = 203/206 (98.54%), Query Frame = 0 
Query:   33 MKTAFAFLALLGVSTAFMPSAPRMSRGRSMRMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF 239
            MKTAFAFLALLGVSTAFMP+APRM+RGRS+RMAVNEMIGSDVET GVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAAL+QV++ERPVAFWQIFL +GAIELTIGKQDTANRAPGDVGFGAAFIPDDA+DFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGH+SPFGDGQG F
Sbjct:    1 MKTAFAFLALLGVSTAFMPTAPRMTRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206
The following BLAST results are available for this feature:
BLAST of NO02G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30498.11.400e-10694.17light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01740NO02G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01740.1NO02G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01740.1.cds1NO02G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01740.1 ID=NO02G01740.1|Name=NO02G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp
TCCGGCCGTGCGCTCTTTCTCCTCAGCAAGCCATGGCAGTGTGTGTAAGG
TGTGACAGGAGCCTCTTTCTTTGGTCATTTTTTGGCCGGCCACGAACGTG
TGGTCGAGCCTCTTGGCTTGGGGGTCTCGCACACGACATCCCCTGATCCT
GTCGAAGCCCATGCGCTGCTCTTTCTCACGCTCGCTCATCTTCCCCTTCC
TCCTCCCTCCTTCCCTTTCACATCTCACCTTCAGATCTCGCTTCCACCCG
CATAATATGAAGACTGCTTTTGCCTTCCTCGCCCTCCTCGGCGTGTCCAC
GGCTTTTATGCCGTCTGCCCCTCGCATGTCCCGCGGCCGCAGCATGCGCA
TGGCGGTGAACGAGATGATTGGCTCGGATGTGGAGACGGGCGGTGTGTTT
GACCCGCTGGGCCTTGCCAAGGATGAGGCCTCCCTGTACCGCTCCCGTTT
GATCGAGCTCAAGCATGGCCGAGTTGCCATGTTGGCGTGCCTGGGCACCC
TCGTCCAGTCCTTCTACCACCTGCCCGACGAGGTCTTCTCCAACCCCCGC
CCCTTGGCCGCTCTCTCCCAAGTCTTCAATGAGCGCCCCGTGGCCTTCTG
GCAAATCTTCCTCACCCTGGGCGCCATCGAACTGACCATCGGCAAGCAGG
ATACCGCTAACCGTGCCCCTGGTGATGTTGGGTTTGGCGCTGCTTTCATC
CCCGACGACGCCGATGACTTCGCCGCTCTCCAGCTGAAGGAATTGAAGAA
CGGTCGGCTTGCGATGATGGCGATCATTGGCCAGTTCGTGCAGGAAAAGC
TGACGGGCCAAGGTCCTATTGAGCAGCTGCTGGAGGGACACTACTCTCCG
TTCGGCGATGGGCAGGGTATGTTCTAAGCGTTGCCTTGCTGTCTGATAGC
TTTGCTGTGCTGAGGCCAATCTCTTCGAGGAGTGGGGGGAAGAAGGCAGG
AGAGGGGGAGACGGAAACTACCATCACTGTCGCGGGGTTGGTGTGGTATG
ATGTGGGATGAGAGGCGAAGGAGAGGAAGAAGAGCCGTACAAAGAGAGCC
TTCTGGTTTGAATCCCTCTAGGTGGGAGAGGTGCGCGTGCGGCCCTCATT
TTATTTACACTAAGCAGCAGCAGATGTAGTAGAAGCAGACGGAAATGAAA
CGAAAGCGAAAGGAAAAAAAAGAGGATTTTTGGTGGT
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protein sequence of NO02G01740.1

>NO02G01740.1-protein ID=NO02G01740.1-protein|Name=NO02G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MRCSFSRSLIFPFLLPPSLSHLTFRSRFHPHNMKTAFAFLALLGVSTAFM
PSAPRMSRGRSMRMAVNEMIGSDVETGGVFDPLGLAKDEASLYRSRLIEL
KHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALSQVFNERPVAFWQIF
LTLGAIELTIGKQDTANRAPGDVGFGAAFIPDDADDFAALQLKELKNGRL
AMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFGDGQGMF*
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mRNA from alignment at chr2:510073..511259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01740.1 ID=NO02G01740.1|Name=NO02G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp|location=Sequence derived from alignment at chr2:510073..511259- (Nannochloropsis oceanica)
TCCGGCCGTGCGCTCTTTCTCCTCAGCAAGCCATGGCAGTGTGTGTAAGG
TGTGACAGGAGCCTCTTTCTTTGGTCATTTTTTGGCCGGCCACGAACGTG
TGGTCGAGCCTCTTGGCTTGGGGGTCTCGCACACGACATCCCCTGATCCT
GTCGAAGCCCATGCGCTGCTCTTTCTCACGCTCGCTCATCTTCCCCTTCC
TCCTCCCTCCTTCCCTTTCACATCTCACCTTCAGATCTCGCTTCCACCCG
CATAATATGAAGACTGCTTTTGCCTTCCTCGCCCTCCTCGGCGTGTCCAC
GGCTTTTATGCCGTCTGCCCCTCGCATGTCCCGCGGCCGCAGCATGCGCA
TGGCGGTGAACGAGATGATTGGCTCGGATGTGGAGACGGGCGGTGTGTTT
GACCCGCTGGGCCTTGCCAAGGATGAGGCCTCCCTGTACCGCTCCCGTTT
GATCGAGCTCAAGCATGGCCGAGTTGCCATGTTGGCGTGCCTGGGCACCC
TCGTCCAGTCCTTCTACCACCTGCCCGACGAGGTCTTCTCCAACCCCCGC
CCCTTGGCCGCTCTCTCCCAAGTCTTCAATGAGCGCCCCGTGGCCTTCTG
GCAAATCTTCCTCACCCTGGGCGCCATCGAACTGACCATCGGCAAGCAGG
ATACCGCTAACCGTGCCCCTGGTGATGTTGGGTTTGGCGCTGCTTTCATC
CCCGACGACGCCGATGACTTCGCCGCTCTCCAGCTGAAGGAATTGAAGAA
CGGTCGGCTTGCGATGATGGCGATCATTGGCCAGTTCGTGCAGGAAAAGC
TGACGGGCCAAGGTCCTATTGAGCAGCTGCTGGAGGGACACTACTCTCCG
TTCGGCGATGGGCAGGGTATGTTCTAAGCGTTGCCTTGCTGTCTGATAGC
TTTGCTGTGCTGAGGCCAATCTCTTCGAGGAGTGGGGGGAAGAAGGCAGG
AGAGGGGGAGACGGAAACTACCATCACTGTCGCGGGGTTGGTGTGGTATG
ATGTGGGATGAGAGGCGAAGGAGAGGAAGAAGAGCCGTACAAAGAGAGCC
TTCTGGTTTGAATCCCTCTAGGTGGGAGAGGTGCGCGTGCGGCCCTCATT
TTATTTACACTAAGCAGCAGCAGATGTAGTAGAAGCAGACGGAAATGAAA
CGAAAGCGAAAGGAAAAAAAAGAGGATTTTTGGTGGT
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Coding sequence (CDS) from alignment at chr2:510073..511259-

>NO02G01740.1 ID=NO02G01740.1|Name=NO02G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr2:510073..511259- (Nannochloropsis oceanica)
ATGCGCTGCTCTTTCTCACGCTCGCTCATCTTCCCCTTCCTCCTCCCTCC
TTCCCTTTCACATCTCACCTTCAGATCTCGCTTCCACCCGCATAATATGA
AGACTGCTTTTGCCTTCCTCGCCCTCCTCGGCGTGTCCACGGCTTTTATG
CCGTCTGCCCCTCGCATGTCCCGCGGCCGCAGCATGCGCATGGCGGTGAA
CGAGATGATTGGCTCGGATGTGGAGACGGGCGGTGTGTTTGACCCGCTGG
GCCTTGCCAAGGATGAGGCCTCCCTGTACCGCTCCCGTTTGATCGAGCTC
AAGCATGGCCGAGTTGCCATGTTGGCGTGCCTGGGCACCCTCGTCCAGTC
CTTCTACCACCTGCCCGACGAGGTCTTCTCCAACCCCCGCCCCTTGGCCG
CTCTCTCCCAAGTCTTCAATGAGCGCCCCGTGGCCTTCTGGCAAATCTTC
CTCACCCTGGGCGCCATCGAACTGACCATCGGCAAGCAGGATACCGCTAA
CCGTGCCCCTGGTGATGTTGGGTTTGGCGCTGCTTTCATCCCCGACGACG
CCGATGACTTCGCCGCTCTCCAGCTGAAGGAATTGAAGAACGGTCGGCTT
GCGATGATGGCGATCATTGGCCAGTTCGTGCAGGAAAAGCTGACGGGCCA
AGGTCCTATTGAGCAGCTGCTGGAGGGACACTACTCTCCGTTCGGCGATG
GGCAGGGTATGTTCTAA
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Synonyms
Publications