NO02G01730, NO02G01730 (gene) Nannochloropsis oceanica

Overview
NameNO02G01730
Unique NameNO02G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3761
Alignment locationchr2:506049..509809 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:506049..509809 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G01730 vs. NCBI_GenBank
Match: EWM30494.1 (hypothetical protein Naga_100013g29 [Nannochloropsis gaditana])

HSP 1 Score: 340.5 bits (872), Expect = 2.100e-89
Identity = 350/912 (38.38%), Postives = 421/912 (46.16%), Query Frame = 0 
Query:  337 ALRAALAKLQEENSNLRTHNFDLSASLVMEEAEQSRLRQEMKRLESECAFMAQDVKEADRMRVRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGGFGYSDGGSNTGVGRRAGGPPRSPSRGFWDRFS-----SSLRSDSLPHFLPPAHQHLLHGIISDRTRAPTTAXXXXXXXXXXPVVGTVTLSRHSTSIRNDCSWSSNXXXXXXXXDLVEGEERDSDGLVALTTASQLCLSLWPPS------------MSXXXXXXXXXXXXXXXXXYSLGAVLPHVHTLGPTKVIAALRVSRCLLISCPAETRRTLLVNGEGGRPEGVEVAMEGEGXXXXXXXXXXXXXXXXATCSLLGRFQGSKIKSELLLWAAEGGRKGVTEGGRHSSSCNNSSRGVTCSNNRSGSRGPPPFLGQLMGFIDYLGKQWREIVSPSFSPSNSSNDNGSSGNMPVAPSISPLLFRMTTEALTTLLVLAQDHTFSPSSLPPSFSSSSSRCWASTWLSGPSLPFLLDGALRIRDVELVDLCIQLLHCLSQSSGAFFDQMAKLRGGGFLPEVACRVLDWHLEVRIKEEEGRQGGRA----------------------EKVGR-----SNSRSFSYGKDVHRLCLRLIRLLSRVCASYGTTGVHLFLRIPLRGPPGTNDNGSSYSDSYRNNEGGKKSGDRLLPLLVRTVHQEVEGLLTRRG----------QGGVRLRRMLARESFALLSLLSANHPGGVIAGLNGSGCRWTLEAVNFRLMNRLVEGLEDLMEDAENL 1195
            +LRAAL  LQEEN+NLRTHNFDLSASLVMEEAEQSRLRQ+MK+LESE AFMAQ+V+EADR      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                                                    + T   RR     R     +   F      S + + SL H  P   +H   G  +D     T                 V LS  S+S   D S             L  G+    +  +A + A+QL LSLWP S            M                   SLGA+ P +H LG  KV+AALRV+RCLL  CP E+R   LV+G G   EG     +G+                  + S + RFQGSK+ +ELL WAA GG  G  EG R   S N  + G               FL +L+  ID++G+ W++       PS  S D          PS  PLL +MT+EAL  LLVL Q+     SSL  SF  SS  CWA+ WL  P+LP LL+GALR R VELVDLC+QL H LSQ S   F  +A L+ G FL  VAC+V DWHLE      EG++G RA                      E V R     S + S      + RLCLR+ R LSRVC SYGT+ VH+FL  PL      ++   +Y  S  + + G ++G  +L  LV  VHQ +  LL R G          Q   +L+RMLARESF LLSLLSAN+P G+ AGL+GSGCRWTLEAVNFRLMN LVEGLEDL ++AENL
Sbjct:  130 SLRAALVVLQEENANLRTHNFDLSASLVMEEAEQSRLRQDMKKLESEKAFMAQEVREADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRIVGREDGLSASGRGASQLSEHKEIGREEMEDAGPDGRKNETSTASDAIVEENDLHACEEALAALKCPVPSTSLVLQSLVESLCLLL-------------------------------------------STGTPHVRRNNEDTRQMECWWSSAFKEETGHSQVLARSLGHNFPTHVRHF--GKEADGATEATGGRRF------------VPLSAFSSSGTCDAS---------IREGLTNGDNSTMNCSIASSMATQLYLSLWPISSSLFFSPSTSHLMPDVQQDTDMSSSMLLPIIQSLGAMFPQMHALGTDKVVAALRVARCLLSLCPGESREMALVSG-GHENEGENADRKGD--------------KDTCSSSFMQRFQGSKVDAELLRWAATGGMDG--EGARQGGSGNKEAIG--------------SFLNRLLELIDWVGEHWKD-----GHPSYDSTD----------PSF-PLL-QMTSEALAVLLVLCQERNGCFSSL-GSFGFSS--CWATAWLRRPTLPLLLEGALRARHVELVDLCLQLTHALSQQSPRLFQALAGLKSGAFLSNVACQVFDWHLESMTWPIEGKRGRRARSGETIPFEYKGEKRTSQIDGCEMVPRKSRLQSPTSSPHSASGLERLCLRMTRFLSRVCISYGTSAVHVFLHAPL-----LDNEDKNY--SLNHTDTGMQNG-HILARLVGVVHQAIHRLLRRTGNPSFFPSDTSQEQWQLQRMLARESFELLSLLSANNPAGLSAGLDGSGCRWTLEAVNFRLMNSLVEGLEDLTDEAENL 916
The following BLAST results are available for this feature:
BLAST of NO02G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30494.12.100e-8938.38hypothetical protein Naga_100013g29 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006796NSK006796Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01730.1NO02G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|141444gene_757Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g29gene179Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01730.1NO02G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01730 ID=NO02G01730|Name=NO02G01730|organism=Nannochloropsis oceanica|type=gene|length=3761bp
ATGGTCAACAACGAACAGCAGCGTCACCACCAGCCGCCGGTGTTGCAGCT
CCAAAAAACGACGACGACGCGGCGAACCACAGTCGGTGTCACCAACAACG
GGAGTGGCAACATCTTTAGTCAGGGCAGCAATGGCAGTGCTAGCCAGATC
ACCAACATTAACCCCTACACGGTTCCCGGCGCGACGCGTATGATTGTCTC
GGACCCTCGTGGGAGTGCAGTGGCCAGTCGAGGGGAAAGTGAAGGTGGAG
GGCGGGGCACGGGCGGCGGCCTCGTCTTTATACCCACCGCAGGCGGAGAA
GGCAAAGGAGGTGGAGGAATGGTAAGACAGCAGCATCAGCAGCAGCAGCA
GCAGCAGCAGCAGCATCAGCATTATCATTATGACGATCATCATCAACAAC
AACAACAACAAGAACAACAACAACAACAAGAACAACAACAACAACAAGAA
CAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAACA
ACAACATGTCTCACGGGCCATGGGCAAATATATTTCACCGGGGGGGCCTC
GCCCTGTGCGAGGAGGTACGCTGCCCCTCTCTCAGTCAGGAGGAGGGGGA
GGAGGAGGAGGAAAACCAGGCGAACTAACTTTTACCAGCCAGAATCAACG
CCGCGTCCCCATGGTCGCTCGCCCACCTTATGCTGCTTTACCAGCAGCAG
CCAATGTACCAGCCTACCGCCCTGCTCAACGGTCGGGCACGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAACA
GCAGCAGCAGCGGCAGCAAATTCATCCTCGGCCCATTCATCCGCAGACTG
CCACCGGTGCTGCACCCCCCCATCCTCCTCTTCCTCCTCTTTTTCACCGT
CCTCCTCCTCCATGCTCCAGCACTgtatacccctctgcgcccctccctcc
caagtcctaccctactggcacccaaccctaccgcccaattagtagccgcc
ttccttccctccccccccccccccgcctacatccgagccccgcaacacca
gcacgggtgttgcctccctcttacagCCTGAGGGTGGAAACGCAGGACCA
GCAGGGAAAGAGCCACACCAATCCGCAGCAACTGTAGGTGCAGCAGCTGC
GGCAGATGAGGCTTTGCGAGCAGCCTTGGCAAAATTACAAGAAGAAAATT
CGAACTTACGCACACATAATTTCGACTTGAGTGCCTCTTTGGTGATGGAG
GAAGCGGAACAATCACGCTTGAGACAGGAGATGAAACGCTTGGAGAGCGA
ATGTGCCTTCATGGCTCAGGACGTCAAGGAGGCGGATCGAATGCGTGTTA
GAATGGAGCAGCAGCAGCAGTTCTTGCAGCAGCAGCATCAACAGCAGCAG
CTGCAGGAGGTGGCAACTAGTGGTAATAGTAGTAGTAGTAGTAGTATTAG
TAGTAGTAGTAGTAGTATTGGAGGATATTGCACGAACAAGAAGCGAAAGA
TCACCACTACGGGCAAGGAAGGGAGGGAGGACGAATGTCATCAGGTTGTT
CCTGGAGGAGGAGGAGGTGTAGTGCTATCAACTAGAGGAGGAGGAGCAGC
TGCAGCAGTGACAAAAGCGACAACAACGACAAAAACGGCAGCAGCAGCAG
CGGCGCAGACAGAAAGAGGACCTCAGCAAGCGGAAGAGAAGGAGGACGAG
GACGAGGACGAGGGCGAGGAGCCAGCGGAGGAAGAGCTGCTGCTACTACG
CGACCCTGCCCCTTCCGCTGTCCTCGCCCTCCAAGAAATGGTGGAAAGCC
TCTGCCTCCTCCTTGGGAGCAGCAGCAGTAGTAGCAAGATTGAAGGTGGA
TTTGGCTACAGCGATGGTGGGAGTAACACAGGTGTGGGAAGGAGGGCTGG
AGGTCCACCTCGTTCCCCCTCCCGGGGTTTCTGGGATCGTTTCTCCTCCA
GTCTCCGTTCCGACTCCCTCCCTCATTTCCTGCCTCCTGCACACCAGCAC
CTCCTCCACGGCATTATTTCGGACAGAACACGTGCTCCCACTACTGCTGC
TGCTACAGGAGCTGCTGCAGCTGCCACACCTGTCGTTGGAACGGTGACTC
TTTCTAGGCACAGTACCAGCATTCGCAACGACTGTAGCTGGAGCAGTAAC
AGCAGCAGCACTAGTAGCACTAGCGACTTAGTGGAAGGAGAGGAACGAGA
TTCCGACGGTCTCGTGGCCCTCACCACGGCCTCCCAACTCTGCCTGTCCC
TGTGGCCCCCCTCCATGTCCTCCATGTCCTCCTCTTCCTCAAGCACCCCG
TCCTCCCTCCTCTCCATCCTTTATTCCTTGGGCGCTGTCCTCCCTCATGT
TCACACGCTGGGCCCTACCAAGGTAATAGCAGCATTAAGAGTCTCTCGCT
GTCTCCTCATTTCATGCCCCGCCGAAACCCGGCGGACATTACTCGTGAAT
GGAGAGGGAGGGAGGCCGGAAGGGGTCGAGGTGGCAATGGAGGGAGAGGG
AGTTGGGGAAGGTGGGTCTGCTGCTGGTGCAACTAGTGATGCTGCTGCTG
CCACGTGTTCTCTTCTGGGACGATTTCAAGGATCGAAGATAAAGTCGGAG
TTGCTGCTTTGGGCGGCGGAGGGAGGGAGGAAGGGAGTGACGGAGGGTGG
GCGACACAGCAGCAGTTGTAACAACAGTAGCAGAGGTGTTACATGTAGCA
ACAACAGAAGTGGTAGCAGAGGTCCTCCTCCCTTTCTAGGTCAGCTTATG
GGTTTCATCGACTACCTCGGGAAACAGTGGAGGGAAATTGTTTCCCCCTC
CTTCTCCCCTTCCAACAGCAGCAACGACAACGGCAGCAGCGGCAACATGC
CCGTTGCTCCTTCTATCTCTCCCCTACTCTTCCGCATGACCACGGAGGCC
CTCACCACCCTCCTCGTTCTCGCACAAGACCATACCTTCTCTCCCTCCTC
CCTTCCTCCCTCCTTCTCCTCCTCCTCCTCCCGCTGCTGGGCTAGCACCT
GGCTCTCTGGCCCCTCTCTTCCCTTTTTGCTGGACGGAGCCTTGCGAATT
AGAGACGTCGAGTTGGTTGATTTGTGTATCCAATTGCTTCATTGTCTCTC
TCAGTCCTCGGGGGCATTTTTTGACCAGATGGCAAAGTTGAGAGGGGGGG
GATTTCTGCCAGAGGTGGCTTGTCGCGTGCTGGATTGGCATTTGGAGGTC
AGAATCAAGGAAGAGGAAGGGAGGCAGGGGGGGAGGGCAGAAAAGGTGGG
GCGGTCAAACTCGCGCTCCTTCTCATACGGGAAGGACGTTCACCGTCTAT
GCCTACGTCTTATTCGCCTACTCTCTCGAGTCTGTGCGTCTTATGGCACC
ACAGGCGTGCACCTGTTCCTCCGTATACCCCTTCGTGGCCCGCCTGGGAC
GAATGACAACGGTAGCAGCTACAGCGACAGCTACAGGAACAACGAGGGAG
GGAAAAAGAGCGGTGACCGTCTCCTCCCCCTACTCGTCAGGACGGTGCAC
CAAGAAGTGGAAGGCCTGCTGACCCGGAGGGGGCAGGGCGGGGTGCGTTT
ACGGCGAATGCTGGCACGAGAGAGCTTTGCCCTCTTGTCCTTATTGAGTG
CCAATCATCCAGGGGGGGTAATCGCCGGCCTTAACGGATCAGGATGCAGG
TGGACGTTGGAAGCTGTTAATTTTCGGCTGATGAACCGGCTGGTGGAGGG
GCTGGAGGACTTAATGGAGGATGCAGAAAACCTTTCTTGCCTTCCCATGT
CTGACCTCTGA
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protein sequence of NO02G01730.1

>NO02G01730.1-protein ID=NO02G01730.1-protein|Name=NO02G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1203bp
MVNNEQQRHHQPPVLQLQKTTTTRRTTVGVTNNGSGNIFSQGSNGSASQI
TNINPYTVPGATRMIVSDPRGSAVASRGESEGGGRGTGGGLVFIPTAGGE
GKGGGGMVRQQHQQQQQQQQQHQHYHYDDHHQQQQQQEQQQQQEQQQQQE
QQQQQQQQQQQQQQQQQQHVSRAMGKYISPGGPRPVRGGTLPLSQSGGGG
GGGGKPGELTFTSQNQRRVPMVARPPYAALPAAANVPAYRPAQRSGTQQQ
QQQQQQQQQQQQQQQQQQQQRQQIHPRPIHPQTATGAAPPHPPLPPLFHR
PPPPCSSTPEGGNAGPAGKEPHQSAATVGAAAAADEALRAALAKLQEENS
NLRTHNFDLSASLVMEEAEQSRLRQEMKRLESECAFMAQDVKEADRMRVR
MEQQQQFLQQQHQQQQLQEVATSGNSSSSSSISSSSSSIGGYCTNKKRKI
TTTGKEGREDECHQVVPGGGGGVVLSTRGGGAAAAVTKATTTTKTAAAAA
AQTERGPQQAEEKEDEDEDEGEEPAEEELLLLRDPAPSAVLALQEMVESL
CLLLGSSSSSSKIEGGFGYSDGGSNTGVGRRAGGPPRSPSRGFWDRFSSS
LRSDSLPHFLPPAHQHLLHGIISDRTRAPTTAAATGAAAAATPVVGTVTL
SRHSTSIRNDCSWSSNSSSTSSTSDLVEGEERDSDGLVALTTASQLCLSL
WPPSMSSMSSSSSSTPSSLLSILYSLGAVLPHVHTLGPTKVIAALRVSRC
LLISCPAETRRTLLVNGEGGRPEGVEVAMEGEGVGEGGSAAGATSDAAAA
TCSLLGRFQGSKIKSELLLWAAEGGRKGVTEGGRHSSSCNNSSRGVTCSN
NRSGSRGPPPFLGQLMGFIDYLGKQWREIVSPSFSPSNSSNDNGSSGNMP
VAPSISPLLFRMTTEALTTLLVLAQDHTFSPSSLPPSFSSSSSRCWASTW
LSGPSLPFLLDGALRIRDVELVDLCIQLLHCLSQSSGAFFDQMAKLRGGG
FLPEVACRVLDWHLEVRIKEEEGRQGGRAEKVGRSNSRSFSYGKDVHRLC
LRLIRLLSRVCASYGTTGVHLFLRIPLRGPPGTNDNGSSYSDSYRNNEGG
KKSGDRLLPLLVRTVHQEVEGLLTRRGQGGVRLRRMLARESFALLSLLSA
NHPGGVIAGLNGSGCRWTLEAVNFRLMNRLVEGLEDLMEDAENLSCLPMS
DL*
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Synonyms
Publications