NO02G01540, NO02G01540 (gene) Nannochloropsis oceanica

Overview
NameNO02G01540
Unique NameNO02G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1214
Alignment locationchr2:455574..456787 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:455574..456787 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: EWM30523.1 (protein of unknown function DUF547 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 4.000e-81
Identity = 220/334 (65.87%), Postives = 234/334 (70.06%), Query Frame = 0 
Query:    1 MDTYFEPLVLAAAAGTGWAAANRLLSSPELDVGLLIGMVLGATLVILILKARGQDVNLLAPLGPGPGGATDQVQTMGRSGSARIDGHRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGQXXXXAVSALRRIASQTGLAGVEADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQPQQPWSGRSGGRSRESSARFAQTLRDPRYNGVKLIDWTGTQVPFNEVVDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGDKAG 335
            M+TYFEPLVLAAAAGTGWAAANRLLS+P+LD+GLL+GMVLGA+LVILILKARG DV L AP                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        EAAGQ      SALRRIASQT L G                                 T            R +E  +RFAQTLRDPRYNGVKLIDW G Q+PFNEVVDFENE+FKG VLFMLRTKPEDPRYVAHFAGKQRLFEMQIQG+FKKLP+GVLYMGAELTERMH+GLVTKTVAGM+L FARRVLKNLHYSFGDK G
Sbjct:    1 METYFEPLVLAAAAGTGWAAANRLLSNPDLDMGLLVGMVLGASLVILILKARGHDVFLGAP-------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGTPTNIVEAAGQ----TFSALRRIASQTRLVG-------------GHGAREEAAGNEASSRLGLDTGATGMPRSMHESRRQEMRSRFAQTLRDPRYNGVKLIDWMGVQIPFNEVVDFENEFFKGQVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGRFKKLPEGVLYMGAELTERMHLGLVTKTVAGMVLAFARRVLKNLHYSFGDKGG 298
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BLAST of NO02G01540 vs. NCBI_GenBank
Match: CBJ26986.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.6 bits (283), Expect = 1.200e-21
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 0 
Query:  241 DFENEYFKGHVLFMLRTKPEDPRYVAHFAG--KQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGDK 333
            +FEN++FKG +LF+++  P DP++ AHF G    R FEMQIQGK K LP+G +YMG EL ER   GLVT+TV+ +++ FA++++K+LHYSFG++
Sbjct:  153 EFENDFFKGRMLFLVKCNPPDPKWAAHFEGSNSNRAFEMQIQGKLKLLPKGEVYMGGELDERPKQGLVTQTVSKIVMSFAKQMVKSLHYSFGER 246
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: XP_002907685.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64249.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 106.7 bits (265), Expect = 1.500e-19
Identity = 46/94 (48.94%), Postives = 71/94 (75.53%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGDKA 334
            + FE E FKGH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  ++  G++T++VA +I+G  RR++  + +SFG  A
Sbjct:  117 IPFETELFKGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPAKITPGVLTRSVALVIMGLIRRLVGRVSFSFGGSA 210
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BLAST of NO02G01540 vs. NCBI_GenBank
Match: CCA18149.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 105.1 bits (261), Expect = 4.300e-19
Identity = 47/104 (45.19%), Postives = 72/104 (69.23%), Query Frame = 0 
Query:  228 DWTGTQVPFNEVVDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGD 332
            D T  ++   E V FENE F G     +RTKPE+P +   F G++R+F +Q+QGKFKK P+G +++G EL  R+ +G++TK+VA M+LG  ++++  +HYSFGD
Sbjct:  183 DDTFVRINSREPVRFENELFVGKAFLFVRTKPENPLWAHLFRGRRRMFWIQVQGKFKKEPRGAVFLGGELPSRISLGILTKSVALMVLGIIKKLVGKIHYSFGD 286
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: CCI42573.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 105.1 bits (261), Expect = 4.300e-19
Identity = 46/102 (45.10%), Postives = 72/102 (70.59%), Query Frame = 0 
Query:  230 TGTQVPFNEVVDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGD 332
            T  ++   E V FENE+F G+    +RTKPE P +   F G++R+F +Q+QG+FK+ P+GV+Y+G EL  R+ +G+ TK+VA M+LG  ++++  +HYSFGD
Sbjct:  185 TFVRINSREPVHFENEFFDGNAYLFVRTKPESPLWAHLFQGRRRMFWIQVQGRFKQEPRGVVYLGGELPWRISLGIFTKSVALMVLGIIKKLVGKIHYSFGD 286
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BLAST of NO02G01540 vs. NCBI_GenBank
Match: XP_008897393.1 (hypothetical protein PPTG_05560 [Phytophthora parasitica INRA-310] >ETI33891.1 hypothetical protein F443_19490 [Phytophthora parasitica P1569] >ETN17888.1 hypothetical protein PPTG_05560 [Phytophthora parasitica INRA-310] >ETP31938.1 hypothetical protein F442_19261 [Phytophthora parasitica P10297])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFG 331
            + FE E F GH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  R+  G+ T++VA +I+G  RR++  + +SFG
Sbjct:  117 IPFETELFMGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPARIAPGVFTRSVALVIMGLIRRLVGRVSFSFG 207
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: ETK74250.1 (hypothetical protein L915_18909 [Phytophthora parasitica] >ETL27679.1 hypothetical protein L916_18807 [Phytophthora parasitica] >ETP03769.1 hypothetical protein F441_19313 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFG 331
            + FE E F GH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  R+  G+ T++VA +I+G  RR++  + +SFG
Sbjct:  117 IPFETELFMGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPARIAPGVFTRSVALVIMGLIRRLVGRVSFSFG 207
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: ETL80930.1 (hypothetical protein L917_18631 [Phytophthora parasitica])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFG 331
            + FE E F GH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  R+  G+ T++VA +I+G  RR++  + +SFG
Sbjct:  117 IPFETELFMGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPARIAPGVFTRSVALVIMGLIRRLVGRVSFSFG 207
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: ETM34111.1 (hypothetical protein L914_18729 [Phytophthora parasitica])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFG 331
            + FE E F GH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  R+  G+ T++VA +I+G  RR++  + +SFG
Sbjct:  117 IPFETELFMGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPARIAPGVFTRSVALVIMGLIRRLVGRVSFSFG 207
[Close]
BLAST of NO02G01540 vs. NCBI_GenBank
Match: ETO62690.1 (hypothetical protein F444_19440 [Phytophthora parasitica P1976])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:  240 VDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFG 331
            + FE E F GH LF++RT+PEDP Y A FAGK+R+F +Q+QG+FK+ P+G +Y+G EL  R+  G+ T++VA +I+G  RR++  + +SFG
Sbjct:  117 IPFETELFMGHALFLVRTQPEDPHYAALFAGKRRMFWIQVQGRFKQAPKGPVYLGGELPARIAPGVFTRSVALVIMGLIRRLVGRVSFSFG 207
The following BLAST results are available for this feature:
BLAST of NO02G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30523.14.000e-8165.87protein of unknown function DUF547 [Nannochloropsi... [more]
CBJ26986.11.200e-2153.19conserved unknown protein [Ectocarpus siliculosus][more]
XP_002907685.11.500e-1948.94conserved hypothetical protein [Phytophthora infes... [more]
CCA18149.14.300e-1945.19conserved hypothetical protein [Albugo laibachii N... [more]
CCI42573.14.300e-1945.10unnamed protein product [Albugo candida][more]
XP_008897393.12.100e-1849.45hypothetical protein PPTG_05560 [Phytophthora para... [more]
ETK74250.12.100e-1849.45hypothetical protein L915_18909 [Phytophthora para... [more]
ETL80930.12.100e-1849.45hypothetical protein L917_18631 [Phytophthora para... [more]
ETM34111.12.100e-1849.45hypothetical protein L914_18729 [Phytophthora para... [more]
ETO62690.12.100e-1849.45hypothetical protein F444_19440 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01540.1NO02G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01540.1NO02G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01540 ID=NO02G01540|Name=NO02G01540|organism=Nannochloropsis oceanica|type=gene|length=1214bp
ATGGACACATATTTCGAACCCTTGGTATTGGCAGCCGCCGCGGGCACCGg
tacgtcgacaacgacagagtgcagagagtgggagaggcaagcgtgatgac
catgtagaggggaagtggaggccatgtagaggggaagtggcttggcacaa
gtcgtactcaaatcagatggtgtttacgctgtgctcatcgtttattcgtc
ccacaaatcctttacacaatagGGTGGGCGGCCGCGAACCGCCTCCTTTC
CAGCCCGGAGCTCGATGTAGGCTTACTTATAGGCATGGTTCTGGGTGCCA
CCCTTGTCATCCTTATCCTCAAAGCGCGGGGGCAAGATGTAAATTTGCTG
GCGCCGTTGGGCCCAGGTCCAGGCGGAGCAACAGATCAGGTGCAAACCAT
GGGCCGTTCGGGATCAGCGAGAATTGATGGACACCGAGGGGTAGCAGGGC
ATGGGTACCCACACGGACATGACCACCCTTCAAATCGCAGGATATCGCCT
AATTCGTCTTCGTCATCCTCACCCGCGTCTTCTTCCCCTTCGCTAGTGGC
CGTGCCGTCGACGATGGTAGAGGCCGCGGGGCAGGCAGCCGGACAAGCAG
TTTCGGCGTTGCGGCGAATTGCTAGCCAGACGGGCTTGGCTGGGGTAGAA
GCTGATGCTCCTGGAGGAGGAGCGGGAGGAGGAGCACGGGGAGGAGCATG
GGGCAGTGGTACTAATGGTGAGACGGGCTCGGACGGTAACGGCACGCAGC
CCCAGCAGCCTTGGAGTGGGAGGTCTGGGGGAAGGAGCCGTGAGAGCAGC
GCGAGGTTTGCTCAGACGTTGCGTGATCCCCGCTATAATGGAGTCAAGCT
AATTGATTGGACGGGGACGCAGGTGCCATTCAACGAGGTCGTTGATTTTG
AAAACGAATATTTTAAAGGGCATGTCCTGTTTATGCTCCGAACCAAGCCG
GAAGACCCAAGGTACGTCGCGCATTTCGCTGGCAAACAACGGTTGTTTGA
GATGCAGATTCAAGGGAAGTTCAAAAAGCTGCCTCAAGGTGTCTTGTACA
TGGGAGCGGAGCTGACGGAGAGAATGCATATGGGTCTGGTGACGAAGACC
GTTGCGGGAATGATCTTGGGTTTTGCGAGGAGGGTGTTGAAGAACTTGCA
TTACTCCTTTGGGGATAAGGCTGGGGGGGTCAGGACGCGGATGAGGTGGA
GCTGCCACATTTGA
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protein sequence of NO02G01540.1

>NO02G01540.1-protein ID=NO02G01540.1-protein|Name=NO02G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MDTYFEPLVLAAAAGTGWAAANRLLSSPELDVGLLIGMVLGATLVILILK
ARGQDVNLLAPLGPGPGGATDQVQTMGRSGSARIDGHRGVAGHGYPHGHD
HPSNRRISPNSSSSSSPASSSPSLVAVPSTMVEAAGQAAGQAVSALRRIA
SQTGLAGVEADAPGGGAGGGARGGAWGSGTNGETGSDGNGTQPQQPWSGR
SGGRSRESSARFAQTLRDPRYNGVKLIDWTGTQVPFNEVVDFENEYFKGH
VLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTER
MHMGLVTKTVAGMILGFARRVLKNLHYSFGDKAGGVRTRMRWSCHI*
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Synonyms
Publications