NO02G01540.1, NO02G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01540.1
Unique NameNO02G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1041
Alignment locationchr2:455574..456787 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:455574..456787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01540.1 vs.
Match: EWM30523.1 (protein of unknown function DUF547 [Nannochloropsis gaditana])

HSP 1 Score: 339.0 bits (868), Expect = 1.800e-89
Identity = 210/335 (62.69%), Postives = 236/335 (70.45%), Query Frame = 0 
Query:    1 MDTYFEPLVLAAAAGTGWAAANRLLSSPELDVGLLIGMVLGATLVILILKARGQDVNLLAPLG-PGPGGATDQVQTMGRSGSARIDGHRGVAGHGYPHGHDHPSNRRISPNSSSSSSPASSSPSLVAVPSTMVEAAGQAAGQAVSALRRIASQTGLAGVEADAPGGGAGGGARGGAWGSGTNGETGSDGNGTQPQQPWSGRSGGRSRESSARFAQTLRDPRYNGVKLIDWTGTQVPFNEVVDFENEYFKGHVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTERMHMGLVTKTVAGMILGFARRVLKNLHYSFGDKAG 335
            M+TYFEPLVLAAAAGTGWAAANRLLS+P+LD+GLL+GMVLGA+LVILILKARG DV L AP   P P  +    +   R G+                  D    + + P S SSSS  +SSPS +  P+ +VEAAGQ      SALRRIASQT L G          G GAR  A G+  +   G D   T   +        R +E  +RFAQTLRDPRYNGVKLIDW G Q+PFNEVVDFENE+FKG VLFMLRTKPEDPRYVAHFAGKQRLFEMQIQG+FKKLP+GVLYMGAELTERMH+GLVTKTVAGM+L FARRVLKNLHYSFGDK G
Sbjct:    1 METYFEPLVLAAAAGTGWAAANRLLSNPDLDMGLLVGMVLGASLVILILKARGHDVFLGAPKPVPAPSPSPTVERRRSREGA-----------------RDPDPPQTLPPPSLSSSS--ASSPS-IGTPTNIVEAAGQT----FSALRRIASQTRLVG----------GHGAREEAAGNEASSRLGLDTGATGMPR---SMHESRRQEMRSRFAQTLRDPRYNGVKLIDWMGVQIPFNEVVDFENEFFKGQVLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGRFKKLPEGVLYMGAELTERMHLGLVTKTVAGMVLAFARRVLKNLHYSFGDKGG 298
The following BLAST results are available for this feature:
BLAST of NO02G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30523.11.800e-8962.69protein of unknown function DUF547 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01540NO02G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01540.1NO02G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01540.1.cds1NO02G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01540.1.cds2NO02G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01540.1 ID=NO02G01540.1|Name=NO02G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
ATGGACACATATTTCGAACCCTTGGTATTGGCAGCCGCCGCGGGCACCGG
GTGGGCGGCCGCGAACCGCCTCCTTTCCAGCCCGGAGCTCGATGTAGGCT
TACTTATAGGCATGGTTCTGGGTGCCACCCTTGTCATCCTTATCCTCAAA
GCGCGGGGGCAAGATGTAAATTTGCTGGCGCCGTTGGGCCCAGGTCCAGG
CGGAGCAACAGATCAGGTGCAAACCATGGGCCGTTCGGGATCAGCGAGAA
TTGATGGACACCGAGGGGTAGCAGGGCATGGGTACCCACACGGACATGAC
CACCCTTCAAATCGCAGGATATCGCCTAATTCGTCTTCGTCATCCTCACC
CGCGTCTTCTTCCCCTTCGCTAGTGGCCGTGCCGTCGACGATGGTAGAGG
CCGCGGGGCAGGCAGCCGGACAAGCAGTTTCGGCGTTGCGGCGAATTGCT
AGCCAGACGGGCTTGGCTGGGGTAGAAGCTGATGCTCCTGGAGGAGGAGC
GGGAGGAGGAGCACGGGGAGGAGCATGGGGCAGTGGTACTAATGGTGAGA
CGGGCTCGGACGGTAACGGCACGCAGCCCCAGCAGCCTTGGAGTGGGAGG
TCTGGGGGAAGGAGCCGTGAGAGCAGCGCGAGGTTTGCTCAGACGTTGCG
TGATCCCCGCTATAATGGAGTCAAGCTAATTGATTGGACGGGGACGCAGG
TGCCATTCAACGAGGTCGTTGATTTTGAAAACGAATATTTTAAAGGGCAT
GTCCTGTTTATGCTCCGAACCAAGCCGGAAGACCCAAGGTACGTCGCGCA
TTTCGCTGGCAAACAACGGTTGTTTGAGATGCAGATTCAAGGGAAGTTCA
AAAAGCTGCCTCAAGGTGTCTTGTACATGGGAGCGGAGCTGACGGAGAGA
ATGCATATGGGTCTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTT
TGCGAGGAGGGTGTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTG
GGGGGGTCAGGACGCGGATGAGGTGGAGCTGCCACATTTGA
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protein sequence of NO02G01540.1

>NO02G01540.1-protein ID=NO02G01540.1-protein|Name=NO02G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MDTYFEPLVLAAAAGTGWAAANRLLSSPELDVGLLIGMVLGATLVILILK
ARGQDVNLLAPLGPGPGGATDQVQTMGRSGSARIDGHRGVAGHGYPHGHD
HPSNRRISPNSSSSSSPASSSPSLVAVPSTMVEAAGQAAGQAVSALRRIA
SQTGLAGVEADAPGGGAGGGARGGAWGSGTNGETGSDGNGTQPQQPWSGR
SGGRSRESSARFAQTLRDPRYNGVKLIDWTGTQVPFNEVVDFENEYFKGH
VLFMLRTKPEDPRYVAHFAGKQRLFEMQIQGKFKKLPQGVLYMGAELTER
MHMGLVTKTVAGMILGFARRVLKNLHYSFGDKAGGVRTRMRWSCHI*
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mRNA from alignment at chr2:455574..456787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01540.1 ID=NO02G01540.1|Name=NO02G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at chr2:455574..456787- (Nannochloropsis oceanica)
ATGGACACATATTTCGAACCCTTGGTATTGGCAGCCGCCGCGGGCACCGG
TACGTCGACAACGACAGAGTGCAGAGAGTGGGAGAGGCAAGCGTGATGAC
CATGTAGAGGGGAAGTGGAGGCCATGTAGAGGGGAAGTGGCTTGGCACAA
GTCGTACTCAAATCAGATGGTGTTTACGCTGTGCTCATCGTTTATTCGTC
CCACAAATCCTTTACACAATAGGGTGGGCGGCCGCGAACCGCCTCCTTTC
CAGCCCGGAGCTCGATGTAGGCTTACTTATAGGCATGGTTCTGGGTGCCA
CCCTTGTCATCCTTATCCTCAAAGCGCGGGGGCAAGATGTAAATTTGCTG
GCGCCGTTGGGCCCAGGTCCAGGCGGAGCAACAGATCAGGTGCAAACCAT
GGGCCGTTCGGGATCAGCGAGAATTGATGGACACCGAGGGGTAGCAGGGC
ATGGGTACCCACACGGACATGACCACCCTTCAAATCGCAGGATATCGCCT
AATTCGTCTTCGTCATCCTCACCCGCGTCTTCTTCCCCTTCGCTAGTGGC
CGTGCCGTCGACGATGGTAGAGGCCGCGGGGCAGGCAGCCGGACAAGCAG
TTTCGGCGTTGCGGCGAATTGCTAGCCAGACGGGCTTGGCTGGGGTAGAA
GCTGATGCTCCTGGAGGAGGAGCGGGAGGAGGAGCACGGGGAGGAGCATG
GGGCAGTGGTACTAATGGTGAGACGGGCTCGGACGGTAACGGCACGCAGC
CCCAGCAGCCTTGGAGTGGGAGGTCTGGGGGAAGGAGCCGTGAGAGCAGC
GCGAGGTTTGCTCAGACGTTGCGTGATCCCCGCTATAATGGAGTCAAGCT
AATTGATTGGACGGGGACGCAGGTGCCATTCAACGAGGTCGTTGATTTTG
AAAACGAATATTTTAAAGGGCATGTCCTGTTTATGCTCCGAACCAAGCCG
GAAGACCCAAGGTACGTCGCGCATTTCGCTGGCAAACAACGGTTGTTTGA
GATGCAGATTCAAGGGAAGTTCAAAAAGCTGCCTCAAGGTGTCTTGTACA
TGGGAGCGGAGCTGACGGAGAGAATGCATATGGGTCTGGTGACGAAGACC
GTTGCGGGAATGATCTTGGGTTTTGCGAGGAGGGTGTTGAAGAACTTGCA
TTACTCCTTTGGGGATAAGGCTGGGGGGGTCAGGACGCGGATGAGGTGGA
GCTGCCACATTTGA
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Coding sequence (CDS) from alignment at chr2:455574..456787-

>NO02G01540.1 ID=NO02G01540.1|Name=NO02G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr2:455574..456787- (Nannochloropsis oceanica)
ATGGACACATATTTCGAACCCTTGGTATTGGCAGCCGCCGCGGGCACCGG
GTGGGCGGCCGCGAACCGCCTCCTTTCCAGCCCGGAGCTCGATGTAGGCT
TACTTATAGGCATGGTTCTGGGTGCCACCCTTGTCATCCTTATCCTCAAA
GCGCGGGGGCAAGATGTAAATTTGCTGGCGCCGTTGGGCCCAGGTCCAGG
CGGAGCAACAGATCAGGTGCAAACCATGGGCCGTTCGGGATCAGCGAGAA
TTGATGGACACCGAGGGGTAGCAGGGCATGGGTACCCACACGGACATGAC
CACCCTTCAAATCGCAGGATATCGCCTAATTCGTCTTCGTCATCCTCACC
CGCGTCTTCTTCCCCTTCGCTAGTGGCCGTGCCGTCGACGATGGTAGAGG
CCGCGGGGCAGGCAGCCGGACAAGCAGTTTCGGCGTTGCGGCGAATTGCT
AGCCAGACGGGCTTGGCTGGGGTAGAAGCTGATGCTCCTGGAGGAGGAGC
GGGAGGAGGAGCACGGGGAGGAGCATGGGGCAGTGGTACTAATGGTGAGA
CGGGCTCGGACGGTAACGGCACGCAGCCCCAGCAGCCTTGGAGTGGGAGG
TCTGGGGGAAGGAGCCGTGAGAGCAGCGCGAGGTTTGCTCAGACGTTGCG
TGATCCCCGCTATAATGGAGTCAAGCTAATTGATTGGACGGGGACGCAGG
TGCCATTCAACGAGGTCGTTGATTTTGAAAACGAATATTTTAAAGGGCAT
GTCCTGTTTATGCTCCGAACCAAGCCGGAAGACCCAAGGTACGTCGCGCA
TTTCGCTGGCAAACAACGGTTGTTTGAGATGCAGATTCAAGGGAAGTTCA
AAAAGCTGCCTCAAGGTGTCTTGTACATGGGAGCGGAGCTGACGGAGAGA
ATGCATATGGGTCTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTT
TGCGAGGAGGGTGTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTG
GGGGGGTCAGGACGCGGATGAGGTGGAGCTGCCACATTTGA
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Synonyms
Publications