NO02G01530, NO02G01530 (gene) Nannochloropsis oceanica

Overview
NameNO02G01530
Unique NameNO02G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr2:454882..455553 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:454882..455553 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G01530 vs. NCBI_GenBank
Match: EWM30523.1 (protein of unknown function DUF547 [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 4.900e-48
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGKEFFEPDEVRIPRR-GKGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCELMQGKGEEPGGGRG-DLLGATE 134
            MDRLV+TP G + PPLGKEF+EPDE R+PRR GKG+EP+FVLGP YSMSFHSMY+DF+QWQLVNIAGQKSIDL+GYFGD+SVHIVVYDL    A   G  HR+CDKRYFYHCEL+   GE   G    D L ATE
Sbjct:  319 MDRLVVTPAGQEPPPLGKEFYEPDETRVPRRGGKGKEPEFVLGPIYSMSFHSMYLDFSQWQLVNIAGQKSIDLSGYFGDASVHIVVYDLHNSVAANPGGAHRRCDKRYFYHCELVSAGGEAGLGEEDTDRLSATE 453          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: CCI42573.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 81.6 bits (200), Expect = 3.300e-12
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGKEFFEPDEVRIPRRGK---GEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAG--GGGDRHRKCDKRYFYHCEL 114
            +D+   TP G   P LG +  +  E     R     G+E  F +GPTY+  FH+MY+D   W+ VNI G   + L+ +F  S + +V YD++  + G   GG +H KC+KRY +  E+
Sbjct:  303 VDQFTCTPKGQLAPQLGVQVIQETEQAQKHRKSVPVGQE-TFKVGPTYTFHFHTMYVDLHHWKTVNIPGINDMKLSTFFNSSPLRLVAYDVEFGSNGIQSGGGKHLKCNKRYLFCFEM 419          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: XP_002297027.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86755.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    2 DRLVITPVGGKIPPLGKEFFEPDEVRIPRRG---KGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCEL--MQGKGEEPG 123
            DR+V++  G ++P LG+EF E +  +  RR    KG    +    T+SMSFH+MY+D A W+ +N+   K +DL+ ++G+  + +V+Y++      GGG+RH   +  Y+   E+  +   G+E G
Sbjct:  469 DRVVVSKPGEEVPTLGEEFLESEASQQSRRNADLKGCAGGWNTRDTFSMSFHNMYLDLAMWRTINLPIAKDMDLSMFWGEGMLRLVMYEVS--LVVGGGERHVTKELSYYVGVEIKYLSDGGKEAG 592          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: CCA18149.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 79.3 bits (194), Expect = 1.600e-11
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLG-KEFFEPDEVRIPRRG--KGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDL--DARAAGGGGDRHRKCDKRYFYHCEL 114
            +D+ + TP G   P LG ++  E ++ R  R+    G+E  F +GPTY+  FH+MY+D   W+ VNI G   + L+ +F  S + +V YD+  D+     GG +H K +KRY +  E+
Sbjct:  303 VDQFICTPEGQVAPQLGVEDIQETEQARKLRKSVLVGQE-AFQVGPTYTFHFHTMYVDLLHWKTVNIPGINDMKLSTFFDSSPLRLVAYDVEFDSNVPRSGGGKHLKFNKRYLFCFEM 419          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: CBN77610.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.0 bits (193), Expect = 2.100e-11
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGKEFFEPDEVRIPRRGKGEEPQ------FVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCELMQ------GKGEEPGGGRGDLLGATE 134
            +D LV TP G ++P LGK  FE D+ R   R +GEE +      F  G TYS SFHSMY+D AQW    I   + IDL  ++G++++ +  Y +   ++      H + +  Y +  ++        G+  + GG      GA E
Sbjct:  633 VDSLVCTPEGQEVPALGKS-FEEDKDRKASRRRGEEDKALGIGDFQTGCTYSFSFHSMYIDMAQWSTCKIPVMRDIDLHTFWGNAALRVAAYVMKPSSSSASSKLHLQSELEYVFCVQVRHVPQSELGQSADEGGWDEAEAGAEE 776          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: POM59580.1 (hypothetical protein PHPALM_31663 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.7 bits (182), Expect = 4.000e-10
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGK-EFFEPDEVRIPRR--GKGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNI-AGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCEL 114
            +D+ V TP G   P LG  +F E +  RI RR    GEE Q+VLG TY+  FH+MY+D  +W+  N+  G  ++DLA +F    + +V Y + A       D HR+ DK Y +  E+
Sbjct:  228 VDQFVETPEGEIPPVLGTGDFGESEAQRIKRRQTSLGEE-QYVLGRTYTFDFHTMYVDLTRWETANLPGGLNAMDLASFFDSLPLRLVAYQVRATVE---TDSHRQRDKDYLFSFEV 340          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: POM80081.1 (Hypothetical protein PHPALM_2126, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.3 bits (181), Expect = 5.300e-10
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGK-EFFEPDEVRIPRRGK--GEEPQFVLGPTYSMSFHSMYMDFAQWQLVNI-AGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCEL 114
            +D+ V TP G   P LG  +F E +  RI RR    GEE Q+VLG TY+  FH+MY+D  +W+  N+  G  ++DLA +F    + +V Y + A       D HR+ DK Y +  E+
Sbjct:  213 VDQFVETPEGEIPPVLGTGDFGESEAQRIKRRHTPLGEE-QYVLGRTYTFDFHTMYVDLTKWETANLPGGLNAMDLASFFDSLPLRLVAYQVRATVE---TDSHRQRDKDYLFSFEV 325          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: XP_012196393.1 (hypothetical protein SPRG_02427 [Saprolegnia parasitica CBS 223.65] >KDO32729.1 hypothetical protein SPRG_02427 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-9
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLGKEFF-EPDEVRIPRRGKGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCELMQGK 118
            +D    TP G   P LG++ F E D+ R  R     E  F    TY+ SFHS Y+DF +WQLVN+ G  S+ L  ++    + IV Y + +         H + +K+Y+ + EL   K
Sbjct:  157 VDEFHRTPEGHTPPRLGQDVFGETDDERAARYAAKGEYAFNTRDTYTFSFHSEYVDFERWQLVNVPGLPSVPLETFWETMPMRIVAYSIASATDMTSPLPHTQLEKQYYMNVELSAAK 274          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: XP_024583982.1 (Pleckstrin homology-like domain [Plasmopara halstedii] >CEG47613.1 Pleckstrin homology-like domain [Plasmopara halstedii])

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-9
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 0
Query:    1 MDRLVITPVGGKIPPLG-KEFFEPDEVRIPRR--GKGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNI-AGQKSIDLAGYFGDSSVHIVVYDL---DARAAGGGGDRHRKCDKRYFYHCELMQGK 118
            +D+ V TP G   P LG  +F E +E R  RR    G E ++ +GPTY+  FH+MY+D  +W+  N+  G  +++LA +F    + +V Y++   D + +    DRHR+ DK Y +  ++   K
Sbjct:  231 VDQFVETPEGHVPPILGTSDFGESEESRRQRRLTSLGAE-KYTVGPTYTFDFHTMYVDLTRWETANLPGGLNAMNLASFFDSLPLRLVAYEVRPSDLKTS----DRHRQRDKEYLFSFQVKYDK 349          
BLAST of NO02G01530 vs. NCBI_GenBank
Match: GAX94476.1 (Hypothetical protein PINS_002375 [Pythium insidiosum])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 46/119 (38.66%), Postives = 58/119 (48.74%), Query Frame = 0
Query:    1 MDRLVITPVG-GKIPPLGKEFF-EPDEVRIPRRGK--GEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVY------DLDARAAGGGGDRHRKCDKRYFY 110
            +D LV+TP G   +P LG E F E  E R  R     G EP   L  TYS  FH+MY D AQW++VN+ G   +DL  + G   + +  Y         A AA G    HR  DK Y +
Sbjct:  175 VDELVVTPDGDAPLPSLGCESFGETAEQRRTRMATLLGHEPAIRLDATYSFQFHTMYADLAQWKIVNVPGMPEMDLKRFCGSLPIRLAAYYVTRPPGTPATAASG---PHRLQDKAYVF 290          
The following BLAST results are available for this feature:
BLAST of NO02G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30523.14.900e-4871.11protein of unknown function DUF547 [Nannochloropsi... [more]
CCI42573.13.300e-1235.59unnamed protein product [Albugo candida][more]
XP_002297027.11.300e-1133.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
CCA18149.11.600e-1135.59conserved hypothetical protein [Albugo laibachii N... [more]
CBN77610.12.100e-1132.41conserved unknown protein [Ectocarpus siliculosus][more]
POM59580.14.000e-1038.46hypothetical protein PHPALM_31663 [Phytophthora pa... [more]
POM80081.15.300e-1038.46Hypothetical protein PHPALM_2126, partial [Phytoph... [more]
XP_012196393.14.500e-933.90hypothetical protein SPRG_02427 [Saprolegnia paras... [more]
XP_024583982.14.500e-933.87Pleckstrin homology-like domain [Plasmopara halste... [more]
GAX94476.15.800e-938.66Hypothetical protein PINS_002375 [Pythium insidios... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01530.1NO02G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622302gene_733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01530.1NO02G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01530 ID=NO02G01530|Name=NO02G01530|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTGG
GAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAAG
GGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCAC
AGTATGTATATGGACTTCGCCCAGTGGCAGCTGGTGAACATAGCGGGACA
GAAGTCGATTGATTTGGCCGGGTATTTTGGGGATTCGAGTGTGCACATCG
TGGTGTATGACTTGGATGCTAGAGCAGCAGGCGGGGGGGGAGACAGGCAC
CGGAAGTGCGATAAGCGATACTTTTACCATTGTGAGTTGATGCAGGGGAA
GGGAGAGGAACCGGGCGGGGGGAGAGGGGATTTGTTGGGGGCGACGGAGA
CGGGGGTTAGTAGCAGTGGAGTTGGAGGAGTGGGGGTGGGTGGGGAGCGG
AGCTCTATTAGGAGACTGTCGTCGCCGAAGTTGGGGAAGGAAAAATCGTT
GTCGAATGTGAGCGTGAGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGCAG
CAGCAGCAGCAGCAGCAGAAGGAGGATGGGGGGGGTTGGCAGGGGGGGGA
GTTGGAGGGGGGGCGGTGCTACATATACAGGTACTAGTAGTGGCGAAGGA
GCCGATGAAGGCCAGAATGTGA
back to top

protein sequence of NO02G01530.1

>NO02G01530.1-protein ID=NO02G01530.1-protein|Name=NO02G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MDRLVITPVGGKIPPLGKEFFEPDEVRIPRRGKGEEPQFVLGPTYSMSFH
SMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRH
RKCDKRYFYHCELMQGKGEEPGGGRGDLLGATETGVSSSGVGGVGVGGER
SSIRRLSSPKLGKEKSLSNVSVSGGGGGGGGGAAAAAAAEGGWGGLAGGG
VGGGAVLHIQVLVVAKEPMKARM*
back to top
Synonyms
Publications