NO02G01530.1, NO02G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01530.1
Unique NameNO02G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr2:454882..455553 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:454882..455553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01530.1 vs.
Match: EWM30523.1 (protein of unknown function DUF547 [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 2.000e-46
Identity = 124/217 (57.14%), Postives = 141/217 (64.98%), Query Frame = 0 
Query:    1 MDRLVITPVGGKIPPLGKEFFEPDEVRIPRR-GKGEEPQFVLGPTYSMSFHSMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRHRKCDKRYFYHCELMQGKGEEPGGGRG-DLLGATETGVSSSGV-----GGVGVGGERSSIRRLSSPKLG----KEKSLSNVSVSGGGGGGGGGAAAAAAAEGGWGGLAGGGVGGGAV 207
            MDRLV+TP G + PPLGKEF+EPDE R+PRR GKG+EP+FVLGP YSMSFHSMY+DF+QWQLVNIAGQKSIDL+GYFGD+SVHIVVYDL    A   G  HR+CDKRYFYHCEL+   GE   G    D L ATE G+SSSG+      G   G   S +R  SS   G    KEK+ S V   G G    G A    A   G+GG    G    AV
Sbjct:  319 MDRLVVTPAGQEPPPLGKEFYEPDETRVPRRGGKGKEPEFVLGPIYSMSFHSMYLDFSQWQLVNIAGQKSIDLSGYFGDASVHIVVYDLHNSVAANPGGAHRRCDKRYFYHCELVSAGGEAGLGEEDTDRLSATEAGMSSSGLHASVFPGHSPGPRPSRVRSRSSDGGGEGGRKEKAGSVVGAGGDGVEMDGLACTLDAGRDGFGGERRAGSYASAV 535
The following BLAST results are available for this feature:
BLAST of NO02G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30523.12.000e-4657.14protein of unknown function DUF547 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01530NO02G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01530.1NO02G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01530.1.cds1NO02G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01530.1 ID=NO02G01530.1|Name=NO02G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTGG
GAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAAG
GGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCAC
AGTATGTATATGGACTTCGCCCAGTGGCAGCTGGTGAACATAGCGGGACA
GAAGTCGATTGATTTGGCCGGGTATTTTGGGGATTCGAGTGTGCACATCG
TGGTGTATGACTTGGATGCTAGAGCAGCAGGCGGGGGGGGAGACAGGCAC
CGGAAGTGCGATAAGCGATACTTTTACCATTGTGAGTTGATGCAGGGGAA
GGGAGAGGAACCGGGCGGGGGGAGAGGGGATTTGTTGGGGGCGACGGAGA
CGGGGGTTAGTAGCAGTGGAGTTGGAGGAGTGGGGGTGGGTGGGGAGCGG
AGCTCTATTAGGAGACTGTCGTCGCCGAAGTTGGGGAAGGAAAAATCGTT
GTCGAATGTGAGCGTGAGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGCAG
CAGCAGCAGCAGCAGCAGAAGGAGGATGGGGGGGGTTGGCAGGGGGGGGA
GTTGGAGGGGGGGCGGTGCTACATATACAGGTACTAGTAGTGGCGAAGGA
GCCGATGAAGGCCAGAATGTGA
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protein sequence of NO02G01530.1

>NO02G01530.1-protein ID=NO02G01530.1-protein|Name=NO02G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MDRLVITPVGGKIPPLGKEFFEPDEVRIPRRGKGEEPQFVLGPTYSMSFH
SMYMDFAQWQLVNIAGQKSIDLAGYFGDSSVHIVVYDLDARAAGGGGDRH
RKCDKRYFYHCELMQGKGEEPGGGRGDLLGATETGVSSSGVGGVGVGGER
SSIRRLSSPKLGKEKSLSNVSVSGGGGGGGGGAAAAAAAEGGWGGLAGGG
VGGGAVLHIQVLVVAKEPMKARM*
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mRNA from alignment at chr2:454882..455553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01530.1 ID=NO02G01530.1|Name=NO02G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at chr2:454882..455553- (Nannochloropsis oceanica)
ATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTGG
GAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAAG
GGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCAC
AGTATGTATATGGACTTCGCCCAGTGGCAGCTGGTGAACATAGCGGGACA
GAAGTCGATTGATTTGGCCGGGTATTTTGGGGATTCGAGTGTGCACATCG
TGGTGTATGACTTGGATGCTAGAGCAGCAGGCGGGGGGGGAGACAGGCAC
CGGAAGTGCGATAAGCGATACTTTTACCATTGTGAGTTGATGCAGGGGAA
GGGAGAGGAACCGGGCGGGGGGAGAGGGGATTTGTTGGGGGCGACGGAGA
CGGGGGTTAGTAGCAGTGGAGTTGGAGGAGTGGGGGTGGGTGGGGAGCGG
AGCTCTATTAGGAGACTGTCGTCGCCGAAGTTGGGGAAGGAAAAATCGTT
GTCGAATGTGAGCGTGAGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGCAG
CAGCAGCAGCAGCAGCAGAAGGAGGATGGGGGGGGTTGGCAGGGGGGGGA
GTTGGAGGGGGGGCGGTGCTACATATACAGGTACTAGTAGTGGCGAAGGA
GCCGATGAAGGCCAGAATGTGA
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Coding sequence (CDS) from alignment at chr2:454882..455553-

>NO02G01530.1 ID=NO02G01530.1|Name=NO02G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr2:454882..455553- (Nannochloropsis oceanica)
ATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTGG
GAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAAG
GGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCAC
AGTATGTATATGGACTTCGCCCAGTGGCAGCTGGTGAACATAGCGGGACA
GAAGTCGATTGATTTGGCCGGGTATTTTGGGGATTCGAGTGTGCACATCG
TGGTGTATGACTTGGATGCTAGAGCAGCAGGCGGGGGGGGAGACAGGCAC
CGGAAGTGCGATAAGCGATACTTTTACCATTGTGAGTTGATGCAGGGGAA
GGGAGAGGAACCGGGCGGGGGGAGAGGGGATTTGTTGGGGGCGACGGAGA
CGGGGGTTAGTAGCAGTGGAGTTGGAGGAGTGGGGGTGGGTGGGGAGCGG
AGCTCTATTAGGAGACTGTCGTCGCCGAAGTTGGGGAAGGAAAAATCGTT
GTCGAATGTGAGCGTGAGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGCAG
CAGCAGCAGCAGCAGCAGAAGGAGGATGGGGGGGGTTGGCAGGGGGGGGA
GTTGGAGGGGGGGCGGTGCTACATATACAGGTACTAGTAGTGGCGAAGGA
GCCGATGAAGGCCAGAATGTGA
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Synonyms
Publications