NO02G00740, NO02G00740 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00740
Unique Name	NO02G00740
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3286
Alignment location	chr2:246038..249323 -

Link to JBrowse

Properties


Property Name	Value
Description	Pentatricopeptide repeat containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:246038..249323 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

Homology

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BLAST of NO02G00740 vs. NCBI_GenBank
Match: EWM30549.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 761.9 bits (1966), Expect = 2.400e-216
Identity = 484/998 (48.50%), Postives = 611/998 (61.22%), Query Frame = 0

Query:   15 MRRYHSLRNVGTCRRRTRPLPS---GATLPSTSSPHSPMPRISMSRLPTQPFHHGRASAAAAAVIASDP-TTPAMLDAEDARARAILLALVEPADQNLAMLAMDD---AAVKAQKAADTSPKT-AEARMDAYNAISTSSHAPTLLFSSSPSSPLAIYCNAFLCSLARAHTTPLLDKAFAYLGKMRAISPEELGDGVIPSALARNNLIRTCAIVIRGVGLDGIDGGGRQRQQQWHPSASHPPSDITHSRADS--KKYVGLGEMLFEEYLQSAHEAIRRQPTNHALLQTYQTDTPPLLSSTIYLYFQAREFSKTITIFQRMREQFFPCPIIPDAWATSGVIRAHAHNRSPLEAWSLLQDLTQGPLPVEVILLPGLYKSLAHGIQRQLAQSRHPMPQALELRRLAHRLLRHMRHVAKLRPPLTLWRVFMKIEARFGDWRRVQRYMAVMKEYGWVSGSHEYAILIEALGEGKALKVLAHTQEKMRREGVPFTYVVYLSIIQAHRKSYDLRGAQAAFEAFIEEPTPRGGKGEIEEEMAQRANPMEVVTAMMKVYAQAGLPQKAWDLFCQFREGRIGGGXXXXXXXXXXXXPDHVMYSVALRVASNLGGVPMVEKLYKEHRGQVEVEGGAGTEVGLGLVREGGDGESRKMGGMGWGDGGMRRGSATG-----KGKDMTLHSVLAAYVDAGQWEKAWAMFDGMVAAERAEGGALSIQLYNVLLHGLIRSGRHEEARTLAERARAEGVEFDAVTMKILAKAVGAEELWTPPAHVYVLGGMRDREEEAGDEXXEGKEEWGRRSVPADTVVLDLHRLSVQEAHNLLARTFEVLRSRYDAEV---GGEGREREKTRK--DKNQTEDRTENKEKEMVGMELKDEGGEGVQDLLLITGFRRRVGPGQGAALLADKSMPVIDPCQKDMDDGNALQVAVREFLGAREIYWSSPPSNPGRLNVQKASLQQYFDRQRKAESEVKFFRLTLFRYIPVASLMALFFLVPKD--GLPL 991
            MR+   L  VG  + R R LPS   G   PS   P  P P +   R    PFH        AA IAS   TT    DAED RA+   LA +EP DQ++A++ M D   AA K Q+  +   KT  E  ++ +   S  S +    FSSS SS LA +CNA LC LARA+   LLDKAFAYLGKMR   P+E  +  +PS  AR+++IRTCAI++RG GL      G +      PS S  PS  +  +A S   KY+ L EMLFEEYL S+ EA+RR+P N AL   Y   TP LLSS IY+Y QARE  K + +F R+R+Q FPC I+PD  A +GVIRA A ++ PLEAW  LQ+L +G  P++V    GLYK+ A  I         P      L  LAHR++  MR    +RP  T W +FMK+E  F DW R+Q+YMA MKE GW  GS+EY +LIEALG  K L ++A  + KM +EG+P TYVVYLSIIQA+R++YD+R A+AAF  +  EP         EEE+  RA P+E+VT MMK+YA+ GLP+KAW LF Q+REG   GG            PDHVMYSVA+RVAS LGG+PMVEK+Y+E++ Q +  G  G    LG                     G R G+  G     K KD    S+LAAYVDA +W +A+  FD + AA+  EG    I+ YNV+++GL R+ RHEEARTLAE+A+A+G+ FD  T KILA   GAE+LW PP HVYVLGG + R+E    +  +G  E GRR +P   VVLDLH LSV EA  LLAR FE +R ++DAE+   G E  E EK  +  + N  E R   K  E   + + D   +G+QDLLLITGFRRR+GPGQGA LLA++ MP+    + + D+ NALQ   R+FLG R IYWSS PSNPGRL VQ  SL+QYF+RQR+ ES+VKF RLTL RYIPV SL+AL F+VPKD  G+PL
Sbjct:    1 MRQCSRLGVVGRTKCRKRLLPSAWKGRARPSL--PSVPHPSLGFLR----PFHANPVHLLVAAPIASKVLTTSYGSDAEDDRAKKDFLAFIEPEDQDVAIMVMRDAYNAAAKGQETVNKDAKTPGEDALEPFILRSLPSSSSLEFFSSSRSSALATFCNALLCGLARANDPALLDKAFAYLGKMRTRLPQEFAERALPSNAARSHMIRTCAILVRGAGLFRHSDTGERLAA---PSPSEGPSFNSPVKAASGGSKYIRLSEMLFEEYLHSSMEAVRREPNNKALFSEYLYHTPRLLSSMIYIYCQARENRKAVALFNRLRDQTFPCSIVPDGLAVAGVIRAQAVSQGPLEAWEHLQELRRGNPPIDVATFFGLYKTFAFCILSHAPSGGRP---GDALHALAHRVVEDMR-AHGIRPSATQWHIFMKVETLFADWERIQQYMAWMKEDGWSYGSYEYGMLIEALGVRKQLGLIAQVRAKMEKEGIPVTYVVYLSIIQAYRRAYDVRSAEAAFRDWQREP------WRDEEEVKHRAEPVEIVTTMMKIYAKGGLPEKAWALFVQYREGDAIGG-EEPGEGKKKRRPDHVMYSVAVRVASLLGGIPMVEKVYEEYQ-QDKARGFHGGGGELGXXXXXXXXXXXXXXXXXXXXSGQRAGADRGLQSRRKLKDNMSLSMLAAYVDAKEWGRAYEFFDTLQAADEKEGTFAPIRAYNVMIYGLKRANRHEEARTLAEQAKAKGIAFDRATQKILASTAGAEDLWAPPPHVYVLGGEKYRQERK-IKSVQGNIE-GRRDLPVGAVVLDLHGLSVDEARTLLAREFEAMREKFDAEMKEGGEEAGENEKCARVNEGNPEEGRDYAKGSEDT-VRVHDAHRDGLQDLLLITGFRRRIGPGQGAVLLANEDMPIYQ--KGEGDNVNALQETARDFLGDRGIYWSSVPSNPGRLLVQSDSLRQYFERQRREESKVKFLRLTLLRYIPVTSLLALLFVVPKDIAGVPL 972

The following BLAST results are available for this feature:

BLAST of NO02G00740 vs. NCBI_GenBank

BLAST of NO02G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30549.1	2.400e-216	48.50	Pentatricopeptide repeat containing protein [Nanno...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006672	NSK006672	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G00740.1	NO02G00740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562539	gene_653	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100033g13	gene86	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G00740.1	NO02G00740.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G00740 ID=NO02G00740|Name=NO02G00740|organism=Nannochloropsis oceanica|type=gene|length=3286bp
TCTTGCGTTCAAATTGTGGAAGCCATGTAAAAAAAGAACCTCCTTCCTTC
CGTTGCCTTTCCGCCGTGCCTTGCCACGATGCGTATGAATGCTCACATCA
CAACCAACCAACTGTCCTTGCACAGCCACAATGAGAAGATACCACAGTCT
CCGGAACGTAGGAACCTGTCGGAGGAGAACGCGGCCGTTGCCGTCGGGCG
CAACACTGCCGTCAACCTCATCACCCCATTCACCCATGCCACGCATTTCC
ATGTCGCGGTTGCCTACGCAACCCTTTCACCATGGTCGCGCCAGCGCAGC
TGCTGCAGCCGTCATTGCGTCTGATCCTACTACTCCCGCCATGCTGGACG
CTGAAGACGCGCGGGCACGAGCGATTCTCTTGGCGCTGGTCGAGCCGGCG
GACCAAAATCTCGCCATGCTCGCCATGGACGATGCCGCCGTCAAGGCCCA
AAAAGCTGCGGACACCTCGCCAAAAACTGCTGAAGCCCGTATGGATGCCT
ACAATGCTATATCAACCAGCTCTCATGCGCCCACGTTGCTTTTCTCGTCT
TCACCTTCGTCTCCTTTGGCCATATATTGCAACGCCTTCCTCTGTAGCCT
TGCCCGGGCCCATACCACGCCCCTTCTCGATAAGGCTTTTGCTTACTTGG
GTAAGATGCGCGCCATTTCTCCAGAAGAGCTAGGCGATGGTGTCATTCCG
TCAGCTCTGGCCCGCAACAATCTAATTCGAACATGCGCCATTGTAATTCG
TGGCGTAGGCCTGGATGGGATCGACGGAGGAGGCCGGCAGAGGCAGCAGC
AGTGGCACCCCTCCGCGTCTCACCCGCCCTCCGATATAACACATTCACGA
GCGGATAGCAAGAAATACGTTGGCCTAGGAGAGATGCTCTTTGAAGAATA
CCTCCAATCCGCCCACGAAGCCATCCGTCGACAGCCCACCAATCACGCCC
TCCTACAGACTTACCAGACTGACACCCCCCCACTCCTCTCATCCACCATC
TACCTCTACTTCCAAGCCCGGGAATTCTCCAAGACCATCACCATCTTCCA
GCGCATGCGCGAGCAATTCTTCCCCTGTCCGATTATCCCAGACGCATGGG
CAACCTCTGGTGTGATCCGTGCTCACGCCCACAATCGGAGCCCTCTTGAG
GCATGGTCGCTGCTGCAAGACCTCACCCAAGGTCCACTTCCTGTGGAAGT
CATCCTCCTTCCCGGCCTGTACAAATCGCTCGCGCATGGTATTCAGCGTC
AGCTTGCACAGAGCCGCCATCCCATGCCACAGGCGCTAGAATTGAGGAGG
TTGGCACACCGTCTTTTGCGTCATATGAGACATGTTGCGAAATTGCGGCC
ACCGTTGACGTTGTGGAGGGTATTCATGAAGATAGAAGCGAGGTTTGGGG
ATTGGAGGAGGGTACAGCGGTACATGGCGGTGATGAAAGAATATGGGTGG
GTGAGTGGAAGCCATGAGTATGCCATTTTGATTGAAGCCCTGGGAGAAGG
GAAGGCTCTCAAGGTGTTGGCCCACACTCAGGAGAAGATGAGACGGGAGG
GGGTACCCTTCACGTACGTGGTGTATTTGTCTATTATCCAGGCACATAGG
AAGAGTTATGATTTGAGAGGAGCCCAGGCGGCGTTTGAGGCGTTTATTGA
GGAGCCGACGCCACGAGGGGGGAAGGGGGAGATTGAGGAGGAGATGGCAC
AGAGAGCTAATCCGATGGAGGTGGTGACGGCAATGATGAAGGTTTATGCT
CAGGCGGGGCTGCCGCAGAAGGCCTGGGATTTGTTTTGTCAGTTCCGAGA
AGGGAGAATTGGAGGGGGGGGAGGGAGAGAGGGAGGAGTGGGAGGGAAGG
GGGGGCCGGATCACGTCATGTACTCGGTCGCGTTGAGGGTTGCGTCAAAT
TTGGGAGGGGTTCCAATGGTGGAAAAGCTGTATAAAGAGCATAGGGGGCA
AGTGGAGGTGGAGGGAGGAGCAGGCACCGAAGTAGGACTGGGATTGGTAC
GTGAGGGGGGAGATGGAGAATCGAGGAAGATGGGGGGAATGGGTTGGGGT
GACGGAGGGATGCGGAGAGGGAGCGCGACGGGAAAGGGAAAAGATATGAC
ATTACACAGCGTGTTGGCGGCTTATGTGGATGCAGGACAGTGGGAAAAGG
CCTGGGCTATGTTCGATGGGATGGTCGCGGCGGAACGTGCGGAGGGTGGG
GCGTTGTCGATTCAGCTTTACAATGTCTTGTTGCACGGATTGATTCGTTC
GGGAAGACATGAGGAGGCACGGACCTTAGCTGAGAGGGCCCGGGCGGAGG
GGGTTGAGTTCGATGCTGTGACGATGAAGATACTGGCCAAGGCAGTAGGG
GCGGAGGAATTGTGGACCCCACCGGCCCATGTTTATGTGTTGGGGGGGAT
GAGGGACAGGGAGGAGGAAGCGGGAGATGAGGAGGAAGAGGGAAAGGAGG
AATGGGGGAGGAGGAGTGTGCCGGCGGATACGGTGGTGTTGGATTTGCAC
AGGTTGAGCGTGCAAGAGGCCCATAATTTGTTGGCAAGGACATTTGAGGT
CCTGCGATCCCGATATGATGCCGAGGTGGGGGGGGAAGGAAGAGAACGAG
AGAAGACGAGAAAGGATAAGAATCAGACAGAAGATAGAACGGAGAATAAG
GAGAAGGAGATGGTTGGAATGGAGCTCAAGGATGAAGGAGGTGAAGGGGT
ACAAGACCTGCTCCTAATCACAGGTTTTCGTCGCCGGGTGGGCCCTGGGC
AAGGCGCGGCGTTGCTGGCAGACAAAAGTATGCCTGTGATTGATCCATGT
CAGAAGGACATGGATGACGGCAACGCCCTGCAAGTAGCAGTGCGCGAATT
CCTAGGGGCCCGTGAGATTTATTGGTCATCCCCGCCCTCCAACCCCGGCA
GGCTCAACGTACAGAAAGCATCTCTGCAGCAGTACTTTGACCGACAGCGG
AAGGCCGAATCCGAGGTGAAATTCTTTCGCCTTACACTTTTTCGGTACAT
TCCAGTGGCATCGTTGATGGCATTGTTTTTCCTCGTGCCTAAGGACGGTT
TGCCGTTGTAAGTAGTATCTCGAATGCTCCATGAGAGGAAAAGGATAAAA
TGATGGCAAAGATATGTAGTATCGAAGATAAGGAGCAGTTTTTTAGATCA
AGTGAAATGGATGGAGGAAAAAAGCTTGTAAATTACGAGAAGATTTGTAT
ATACGTACATATACATAAGTTTGTGGATTTGACGGGAAAAAGCATGTGAC
ACCGGCATCAAAGGATAAAATGAGCGAGAACGAGGA

protein sequence of NO02G00740.1

>NO02G00740.1-protein ID=NO02G00740.1-protein|Name=NO02G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=991bp
MLTSQPTNCPCTATMRRYHSLRNVGTCRRRTRPLPSGATLPSTSSPHSPM
PRISMSRLPTQPFHHGRASAAAAAVIASDPTTPAMLDAEDARARAILLAL
VEPADQNLAMLAMDDAAVKAQKAADTSPKTAEARMDAYNAISTSSHAPTL
LFSSSPSSPLAIYCNAFLCSLARAHTTPLLDKAFAYLGKMRAISPEELGD
GVIPSALARNNLIRTCAIVIRGVGLDGIDGGGRQRQQQWHPSASHPPSDI
THSRADSKKYVGLGEMLFEEYLQSAHEAIRRQPTNHALLQTYQTDTPPLL
SSTIYLYFQAREFSKTITIFQRMREQFFPCPIIPDAWATSGVIRAHAHNR
SPLEAWSLLQDLTQGPLPVEVILLPGLYKSLAHGIQRQLAQSRHPMPQAL
ELRRLAHRLLRHMRHVAKLRPPLTLWRVFMKIEARFGDWRRVQRYMAVMK
EYGWVSGSHEYAILIEALGEGKALKVLAHTQEKMRREGVPFTYVVYLSII
QAHRKSYDLRGAQAAFEAFIEEPTPRGGKGEIEEEMAQRANPMEVVTAMM
KVYAQAGLPQKAWDLFCQFREGRIGGGGGREGGVGGKGGPDHVMYSVALR
VASNLGGVPMVEKLYKEHRGQVEVEGGAGTEVGLGLVREGGDGESRKMGG
MGWGDGGMRRGSATGKGKDMTLHSVLAAYVDAGQWEKAWAMFDGMVAAER
AEGGALSIQLYNVLLHGLIRSGRHEEARTLAERARAEGVEFDAVTMKILA
KAVGAEELWTPPAHVYVLGGMRDREEEAGDEEEEGKEEWGRRSVPADTVV
LDLHRLSVQEAHNLLARTFEVLRSRYDAEVGGEGREREKTRKDKNQTEDR
TENKEKEMVGMELKDEGGEGVQDLLLITGFRRRVGPGQGAALLADKSMPV
IDPCQKDMDDGNALQVAVREFLGAREIYWSSPPSNPGRLNVQKASLQQYF
DRQRKAESEVKFFRLTLFRYIPVASLMALFFLVPKDGLPL*

Synonyms

Publications