NO02G00580, NO02G00580 (gene) Nannochloropsis oceanica

Overview
NameNO02G00580
Unique NameNO02G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3217
Alignment locationchr2:196439..199655 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:196439..199655 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: EWM30602.1 (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 9.700e-122
Identity = 214/278 (76.98%), Postives = 246/278 (88.49%), Query Frame = 0 
Query:    1 MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQLA 279
            MDFCYPL  WSF VHTAC +V+ + L PA+++  +I+ R I MTPTLC ALAYENLLLV+PN P+C+L AQR GWIMNA+IPPLFLVASFETGY VHKHRSVKYLGINFDEGKRVDT+PCSWFLRNL RLI+LAL FMGL VNFS+FFP +S+NAGMSGYLGLGR D AHYY+S+VPSLVFSLV+L+IAATI+RYG+HSTLLIPRSCGW+W+LLGS+LQTAGQFPAS+A YPSTSMAG    L+ ++ THRLVL DMGEA +ITEFLRRQKAVQQ+LA
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLA 278
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: EWM30603.1 (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 9.700e-122
Identity = 214/278 (76.98%), Postives = 246/278 (88.49%), Query Frame = 0 
Query:    1 MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQLA 279
            MDFCYPL  WSF VHTAC +V+ + L PA+++  +I+ R I MTPTLC ALAYENLLLV+PN P+C+L AQR GWIMNA+IPPLFLVASFETGY VHKHRSVKYLGINFDEGKRVDT+PCSWFLRNL RLI+LAL FMGL VNFS+FFP +S+NAGMSGYLGLGR D AHYY+S+VPSLVFSLV+L+IAATI+RYG+HSTLLIPRSCGW+W+LLGS+LQTAGQFPAS+A YPSTSMAG    L+ ++ THRLVL DMGEA +ITEFLRRQKAVQQ+LA
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLA 278
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: CBN77182.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-26
Identity = 81/258 (31.40%), Postives = 133/258 (51.55%), Query Frame = 0 
Query:   21 VSLLLLPPAIHYAARIESRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHA--HYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQ 275
            VSLL  P  I    R       + P +CL LAYENL+L L N         ++G    A + PLFLV +FE  Y VHK RSV++ GI FD+G R    PCSW LRN   ++S+ L  + + VN+ +     ++    +G  GL     A  H  ++L+P+   + ++L IA  + +YG H+++++  +   GW ++ LG++    GQ P    F    +  G   FL+ V+   R + +++  A+  + FL ++  ++
Sbjct:   22 VSLLCFPFGIWMGRRFTILAAKLVPVVCLLLAYENLVLALSNVLSDDSKFVQIGRTTRAAVIPLFLVVTFEVAYAVHKRRSVQFCGIVFDQGHRRGVEPCSWVLRNFVGIVSVLLFVVHILVNYDIGIGDDNK----AGGTGLVETQDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWCF-RVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELE 274
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: OWZ17268.1 (hypothetical protein PHMEG_0008807 [Phytophthora megakarya])

HSP 1 Score: 88.6 bits (218), Expect = 6.700e-14
Identity = 75/285 (26.32%), Postives = 131/285 (45.96%), Query Frame = 0 
Query:   10 WSFIVHTACTTVSLLLLPPAIHYAARIE-SRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCS------------WF---LRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQ 277
            W F+       V L+LL  ++ YA +   +   L+TP +C +L ++N ++            Q +    +A + P+ L+  +E  Y+VHKH+SV + GI+F+ G R   S C             W+   LR +  ++S  LL + L V +      + E A M    G    + AH   +++P+LV   ++L I   +  YG + + ++  +C   W WML+G+V    G +   S  Y  +S AG    +  +V   R V  DM +  +  EF+  + A  ++
Sbjct:   18 WCFV------AVGLVLLYFSLGYAKKYSTTAAFLLTPFICFSLVFDNAVMATTGIDRRRASTQAM-LAFHACVIPMLLLVCYELAYMVHKHKSVNFCGISFESGHRARGSSCEHAGAASNLAKRRWWSTCLRFIVWVVSCVLLVLNLLVAYRWTSDLTPEIASMYDLQG---DNVAHAVCAILPALVLVALALYIGMQLWNYGTNYSYMVHATCFNPWIWMLVGAVSLLVG-YLMPSPIYAMSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 291
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: XP_009531201.1 (hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae] >EGZ13772.1 hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae])

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13
Identity = 74/286 (25.87%), Postives = 128/286 (44.76%), Query Frame = 0 
Query:   10 WSFIVHTACTTVSLLLLPPAIHYAARIE-SRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCS------------WFLRNLTR----LISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQ 277
            W F+       V ++L   ++ YA +   +   L+TP +C +L ++N ++            Q +    +A + P+ L+  +E  Y+VHKH+SV + GI+F+ G R   S C             W+L    R    L+  ALL + L V +      + E A M    G      AH   +++P+LV   ++L I   +  YG + + ++  +C   W WML+G+V    G +   S  Y  +S AG    +  +V   R V  DM +  +  EF+  + A  ++
Sbjct:   20 WVFV------AVGVVLFYYSLGYAKKYSTTAAFLLTPFICFSLVFDNAIMATTGIDRRRASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGISFESGHRERGSSCDNAGAASSLARRRWWLSTCLRFFVWLVGCALLVLNLLVTYRWTSDLTPEIASMYELQG---DSTAHAVCAILPALVLVALALYIGLRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLVG-YLMPSPIYALSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 294
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: XP_009836601.1 (hypothetical protein H257_11393 [Aphanomyces astaci] >ETV74087.1 hypothetical protein H257_11393 [Aphanomyces astaci])

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-13
Identity = 71/261 (27.20%), Postives = 121/261 (46.36%), Query Frame = 0 
Query:   13 IVHTACTTVSLLLLPPAIHYAARIESR-FILMTPTLCLALAYENLLL--VLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPC-SWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFL 268
            ++H        +LL  +  YA +  ++   L+ P +C+ + YEN++L  V  ++ Y S+   +V     + I P  L+  FE  Y+VHK+RSV + GI+FD G R     C S FLR    L+ L LL + L V    ++ +  +    SG   +         ++++P+    ++++ I   +  YG +    +  +C   W WM++GS L  AG +      +  TS  G    L  ++   R V KD+ E   I   L
Sbjct:   13 VLHGFFAAAGFVLLYFSYKYARKYYNQAAFLLPPFVCICVIYENMILATVGLDKDYDSV---KVMLAFQSCIIPAMLLICFEVAYLVHKNRSVNFCGISFDSGHRTHRDDCKSTFLRFAMWLVGLGLLTLKLLV----YYRYYDDIVFTSGIYEVNGSATVGTVLTIIPAFSLVVLAIYIGMRLWNYGSNYAYTVHSTCFNPWIWMMVGSFLLAAG-YLMPDPLFARTSNGGEICMLAAIIRMFREVHKDLQEGTEIANTL 265
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: EJK73616.1 (hypothetical protein THAOC_04749 [Thalassiosira oceanica])

HSP 1 Score: 85.9 bits (211), Expect = 4.300e-13
Identity = 62/194 (31.96%), Postives = 96/194 (49.48%), Query Frame = 0 
Query:   83 PLFLVASFETGYVVHKHRSVKYLGINFDEGKRV-DTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSEN-AGMSGYLGLGRVD-----HAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRS-CG-WSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFL 268
            P  L+  FE  Y+  K RSV + G+ FD+G RV DT   S  LRN  R ++LALL +GL VNF + +   S +  G +G+  +   D          +SL+P+L+  LVS  ++  + RYG  S++++  S C  W +   G +     Q       Y   S  GY  +++ V+     V KDM + + +  FL
Sbjct:    8 PALLMTIFELTYLTMKRRSVNFCGMQFDQGVRVRDTMVMSCLLRNFIRTLALALLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQL-FDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFL 200
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: ETI45018.1 (hypothetical protein F443_10317 [Phytophthora parasitica P1569] >ETI45019.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK84988.1 hypothetical protein L915_10090 [Phytophthora parasitica] >ETM44808.1 hypothetical protein L914_09968 [Phytophthora parasitica] >ETM44809.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 84.7 bits (208), Expect = 9.700e-13
Identity = 74/286 (25.87%), Postives = 128/286 (44.76%), Query Frame = 0 
Query:   10 WSFIVHTACTTVSLLLLPPAIHYAARIE-SRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCS------------WF----LRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQ 277
            W F+       V ++L   ++ YA +   +   L+TP +C +L ++N ++            Q +    +A + P+ L+  +E  Y+VHKH+SV + GI F+ G R   S C+            W+    LR +  L+  ALL + L V +      S E   M    G      AH   +++P+L+  +++L I   +  YG + + ++  +C   W WML+G+V    G    S  F  S S AG    +  +V   R V  DM +  +  EF+  + A  ++
Sbjct:   19 WCFV------AVGIVLFYYSLGYAKKYSTTAAFLLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQG---DSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPSPIFALS-SNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: ETP14853.1 (hypothetical protein F441_10254 [Phytophthora parasitica CJ01A1] >ETP14854.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.7 bits (208), Expect = 9.700e-13
Identity = 74/286 (25.87%), Postives = 128/286 (44.76%), Query Frame = 0 
Query:   10 WSFIVHTACTTVSLLLLPPAIHYAARIE-SRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCS------------WF----LRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQ 277
            W F+       V ++L   ++ YA +   +   L+TP +C +L ++N ++            Q +    +A + P+ L+  +E  Y+VHKH+SV + GI F+ G R   S C+            W+    LR +  L+  ALL + L V +      S E   M    G      AH   +++P+L+  +++L I   +  YG + + ++  +C   W WML+G+V    G    S  F  S S AG    +  +V   R V  DM +  +  EF+  + A  ++
Sbjct:   19 WCFV------AVGIVLFYYSLGYAKKYSTTAAFLLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQG---DSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPSPIFALS-SNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293
[Close]
BLAST of NO02G00580 vs. NCBI_GenBank
Match: XP_002903221.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55645.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.7 bits (208), Expect = 9.700e-13
Identity = 73/286 (25.52%), Postives = 130/286 (45.45%), Query Frame = 0 
Query:   10 WSFIVHTACTTVSLLLLPPAIHYAARIE-SRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCS------------WFLRNLTR----LISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSC--GWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQ 277
            W F+       V ++L   ++ YA +   +   L+TP +C +L ++N ++            Q V    +A + P+ L+  +E  Y+VHKH+SV + GI+F+ G R   S C+            W+L    R    L++ ALL + L V +      + E   M    G    + AH   +++P++V   ++L I   +  YG + + ++  +C   W WML+G+V    G +   S  Y  +S AG    +  +V   R V  DM +  +  EF+  + A  ++
Sbjct:   19 WCFV------AVGIVLFYYSLGYAKKYSTTAAFLLTPFICFSLVFDNAIMATTGIDRRRASTQ-VMLAFHACVTPMLLLVCYELAYLVHKHKSVNFCGISFESGHRERGSSCANAGAAASLAKRRWWLSTCLRFIVWLMACALLVLNLLVAYRWTSDLTPEVTSMYELQG---DNAAHAVCAILPAVVLVALALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLIG-YVMPSPIYALSSNAGELTMMATIVRMLREVHHDMQQGLQFGEFIDPEGAAARR 293
The following BLAST results are available for this feature:
BLAST of NO02G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30602.19.700e-12276.98hypothetical protein Naga_100129g14 [Nannochlorops... [more]
EWM30603.19.700e-12276.98hypothetical protein Naga_100129g14 [Nannochlorops... [more]
CBN77182.12.000e-2631.40conserved unknown protein [Ectocarpus siliculosus][more]
OWZ17268.16.700e-1426.32hypothetical protein PHMEG_0008807 [Phytophthora m... [more]
XP_009531201.11.100e-1325.87hypothetical protein PHYSODRAFT_562300 [Phytophtho... [more]
XP_009836601.11.500e-1327.20hypothetical protein H257_11393 [Aphanomyces astac... [more]
EJK73616.14.300e-1331.96hypothetical protein THAOC_04749 [Thalassiosira oc... [more]
ETI45018.19.700e-1325.87hypothetical protein F443_10317 [Phytophthora para... [more]
ETP14853.19.700e-1325.87hypothetical protein F441_10254 [Phytophthora para... [more]
XP_002903221.19.700e-1325.52conserved hypothetical protein [Phytophthora infes... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006647NSK006647Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00580.2NO02G00580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G00580.1NO02G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138527gene_633Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100129g14gene68Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00580.2NO02G00580.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G00580.1NO02G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00580 ID=NO02G00580|Name=NO02G00580|organism=Nannochloropsis oceanica|type=gene|length=3217bp
CCCCGTCCTTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACA
CAATTTTAACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACT
CCTTCGAGGTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAG
CAAGTTCATCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCC
CACTTTGCCGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCT
GATGTCGTGATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCG
GACGTACTATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGC
GGTGTACTCACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCC
AAACGCTTGCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGC
CGGGACAATCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTG
ATAAAAAAAATAAGTAGAACGCACACTGCTTTCGTCCTCCTCGTCGCGCA
CATCCCACGACTTTAAAGCTGTCCTGGCCACTTCTCATTCCTAGgtaatc
aatgcccggactagatatgacgtggcatttttctcctgtctccctctcct
catccctccctcccaaatgtcatggtcatctaccccccccctacttacct
atctgacatcctcttcctgacagcatggcggacaagagaataaagcgggg
ttgcgaccgccatacccgttattgtccacagagaacagcttccccccccc
cttctccattatcttttctctggccgcggctgctgtcacccctcgcccac
gtactcactccctttttcctccctccccccctccttccttccctccctcc
ctccctctctcactcccacccaccacggcaagcaagGCCCACTTATCCAA
AGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACAC
TGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATG
CAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTG
GCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTG
CAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGgtaggtgataca
tcgtttggaagggtacctcacctctgagggtaaataaacctccccccctc
ttcccttcccccccccagggccctgccctccttccccccttccccccttc
catccttcgagatagttcacgaacaaaaaactaatcgtctcctccccccc
cccttccccttcctgctcccctccctttccctcgtccccccccatacatg
cactccattcagCCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAG
ACCGGCTATGTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAA
CTTCGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCC
GCAACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCT
GTCAACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGGTATGTC
CGGGTACCTTGGCCTGGGGCGCGTCGACCATGCGCATTACTACATCTCCC
TCGTTCCCTCCCTCGTCTTCTCCCTCGTGTCCCTCATCATCGCCGCCACC
ATCCGAAGGTATGGAAAGCACTCCACCCTCCTCATCCCCCGCTCCTGCGG
CTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTC
CCGCCTCTTCTGCCTTTTACCCCTCCACGTCCATGGCAGGGTACACGGCA
TTCCTCGTCTGCGTCGTCTGCACGCACCGGCTGGTGCTCAAGGACATGGG
CGAGGCGGAGAGAATAACGGAATTTTTGCGGCGACAAAAGGCCGTGCAGC
AGCAGCTGGCCGCCACCTGCGTGCTGAGGGAGGGAATGAGGGCGAGGAGG
AGGAAGGACGCGGCGGTCGAGGCGCGGGGGGAGGGAGGGGAGGAGGAGGG
AGGAGCGGGGAGGGGTGTGGTTGTAAATGGATACGGGGGAAGGAGGAGGA
CGTCTGGTCAATGCCACCACCACCACCACCACCACCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCATAACGAACAGCATCA
GGAACAGCAGGAACAGCATATGAAGGACGCAGATGGGGTAGAAGAAGGGG
AAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGCGGGGTCCGGTGTTG
CGGGCGGGCATGGGAACCACGACGATGAAGATGGTCAGACGCTCGAGTGG
AGGGAAGAGAGAGAGAGGGGGAGGAAGGGAGGGAGGGGTTGCCATGCCTT
CTTCCGTTGAGATGACGTCTACTGCAGTGGTGGTAACAGCTGAAGCAGAT
GATGGCGGGAAAGGACGAGAATGGAGAGAAGAAGGGGGAGAAGGAGGAAA
AATAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGGCGCGGGGGAGGGGGGG
GGCTGCTGCGGCGCGTGAGTAGTTTGTTTGAAAGGCAGCTGCAAGGTCTG
GACGGAGGACAGGGAGGGAAGGATGGAGAGACGGGAGGGAGGGAGGGAGC
AAATGGTCACAACCTGATAGTAGGAGGTGATGGAGAGACGGAGGGAGAGG
TGATGGTGACGATGGAGATGCTGGACGTGAGAATAGATTTACATGCCCTG
CCACCACCTCAAGGAGGGGACCAAATAGGGGTGTCAAGAGGGTAGAGGAA
AGGAAGGAAGGGTGACGGGGACAGAGAGAGCAAATGAATGGAGAGTGATT
CTTGATTTCTCCTACCCGGATTAAAAAAGAGTTGAACTTGTTCAAAATAC
TTACAGGGAAACGGATAAGCGTGTCGTCATCGCCACCGCTGCACTAGGAG
CAACGCCAACGACAAGAGAGCAACGGCATATGCGGGAGAAAATCGAGCAG
CTGGAGCACGCACCAACGACGCGCAACCGTGCGAGGAAAGAGTGATGGAA
GCTGCAGCTGCAGCGACAAAAACAGCAGCAGCAGCAGGAACAGCAGTGAA
AAAATGACAAGGACGGGAACTTTACCTCCACAAATGACCCGAAAGCAATC
AATTGACGAAACGACTT
back to top

protein sequence of NO02G00580.2

>NO02G00580.2-protein ID=NO02G00580.2-protein|Name=NO02G00580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLA
LAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHR
SVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPH
SSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHST
LLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTH
RLVLKDMGEAERITEFLRRQKAVQQQLAATCVLREGMRARRRKDAAVEAR
GEGGEEEGGAGRGVVVNGYGGRRRTSGQCHHHHHHHHQQQQQQQQQQEQQ
QQHNEQHQEQQEQHMKDADGVEEGEGGGGGGGGGGGRGPVLRAGMGTTTM
KMVRRSSGGKRERGGGREGGVAMPSSVEMTSTAVVVTAEADDGGKGREWR
EEGGEGGKIAGGRGGGGGGRGGGGGLLRRVSSLFERQLQGLDGGQGGKDG
ETGGREGANGHNLIVGGDGETEGEVMVTMEMLDVRIDLHALPPPQGGDQI
GVSRG*
back to top

protein sequence of NO02G00580.1

>NO02G00580.1-protein ID=NO02G00580.1-protein|Name=NO02G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLA
LAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHR
SVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPH
SSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHST
LLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTH
RLVLKDMGEAERITEFLRRQKAVQQQLAATCVLREGMRARRRKDAAVEAR
GEGGEEEGGAGRGVVVNGYGGRRRTSGQCHHHHHHHHQQQQQQQQQQEQQ
QQHNEQHQEQQEQHMKDADGVEEGEGGGGGGGGGGGRGPVLRAGMGTTTM
KMVRRSSGGKRERGGGREGGVAMPSSVEMTSTAVVVTAEADDGGKGREWR
EEGGEGGKIAGGRGGGGGGRGGGGGLLRRVSSLFERQLQGLDGGQGGKDG
ETGGREGANGHNLIVGGDGETEGEVMVTMEMLDVRIDLHALPPPQGGDQI
GVSRG*
back to top
Synonyms
Publications