NO02G00580.2, NO02G00580.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00580.2
Unique NameNO02G00580.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2993
Alignment locationchr2:196439..199655 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:196439..199655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00580.2 vs.
Match: EWM30602.1 (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 446.4 bits (1147), Expect = 1.300e-121
Identity = 214/278 (76.98%), Postives = 246/278 (88.49%), Query Frame = 0 
Query:    1 MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQLA 279
            MDFCYPL  WSF VHTAC +V+ + L PA+++  +I+ R I MTPTLC ALAYENLLLV+PN P+C+L AQR GWIMNA+IPPLFLVASFETGY VHKHRSVKYLGINFDEGKRVDT+PCSWFLRNL RLI+LAL FMGL VNFS+FFP +S+NAGMSGYLGLGR D AHYY+S+VPSLVFSLV+L+IAATI+RYG+HSTLLIPRSCGW+W+LLGS+LQTAGQFPAS+A YPSTSMAG    L+ ++ THRLVL DMGEA +ITEFLRRQKAVQQ+LA
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLA 278
The following BLAST results are available for this feature:
BLAST of NO02G00580.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30602.11.300e-12176.98hypothetical protein Naga_100129g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00580NO02G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00580.2NO02G00580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00580.2.cds1NO02G00580.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00580.2.cds2NO02G00580.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00580.2 ID=NO02G00580.2|Name=NO02G00580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp
CCCCGTCCTTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACA
CAATTTTAACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACT
CCTTCGAGGTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAG
CAAGTTCATCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCC
CACTTTGCCGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCT
GATGTCGTGATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCG
GACGTACTATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGC
GGTGTACTCACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCC
AAACGCTTGCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGC
CGGGACAATCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTG
ATAAAAAAAATAAGTAGAACGCACACTGCTTTCGTCCTCCTCGTCGCGCA
CATCCCACGACTTTAAAGCTGTCCTGGCCACTTCTCATTCCTAGGTAATC
AATGCCCGGACTAGATATGACGTGGCATTTTTCTCCTGTCTCCCTCTCCT
CATCCCTCCCTCCCAAATGTCATGGTCATCTACCCCCCCCCTACTTACCT
ATCTGACATCCTCTTCCTGACAGCATGGCGGACAAGAGAATAAAGCGGGG
TTGCGACCGCCATACCCGTTATTGTCCACAGAGAACAGCTTCCCCCCCCC
CTTCTCCATTATCTTTTCTCTGGCCGCGGCTGCTGTCACCCCTCGCCCAC
GTACTCACTCCCTTTTTCCTCCCTCCCCCCCTCCTTCCTTCCCTCCCTCC
CTCCCTCTCTCACTCCCACCCACCACGGCAAGCAAGGCCCACTTATCCAA
AGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACAC
TGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATG
CAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTG
GCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTG
CAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGCCATCATCCCCC
CCCTCTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACAC
CGTTCCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGA
TACGTCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCC
TCGCCCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCC
CACTCCTCCGAAAACGCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCGT
CGACCATGCGCATTACTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCCC
TCGTGTCCCTCATCATCGCCGCCACCATCCGAAGGTATGGAAAGCACTCC
ACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTC
GGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCT
CCACGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACG
CACCGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAATT
TTTGCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGC
TGAGGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCG
CGGGGGGAGGGAGGGGAGGAGGAGGGAGGAGCGGGGAGGGGTGTGGTTGT
AAATGGATACGGGGGAAGGAGGAGGACGTCTGGTCAATGCCACCACCACC
ACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAG
CAGCAGCAGCATAACGAACAGCATCAGGAACAGCAGGAACAGCATATGAA
GGACGCAGATGGGGTAGAAGAAGGGGAAGGAGGAGGAGGGGGAGGAGGAG
GAGGAGGAGGGCGGGGTCCGGTGTTGCGGGCGGGCATGGGAACCACGACG
ATGAAGATGGTCAGACGCTCGAGTGGAGGGAAGAGAGAGAGAGGGGGAGG
AAGGGAGGGAGGGGTTGCCATGCCTTCTTCCGTTGAGATGACGTCTACTG
CAGTGGTGGTAACAGCTGAAGCAGATGATGGCGGGAAAGGACGAGAATGG
AGAGAAGAAGGGGGAGAAGGAGGAAAAATAGCAGGAGGAAGAGGAGGAGG
AGGAGGAGGGCGCGGGGGAGGGGGGGGGCTGCTGCGGCGCGTGAGTAGTT
TGTTTGAAAGGCAGCTGCAAGGTCTGGACGGAGGACAGGGAGGGAAGGAT
GGAGAGACGGGAGGGAGGGAGGGAGCAAATGGTCACAACCTGATAGTAGG
AGGTGATGGAGAGACGGAGGGAGAGGTGATGGTGACGATGGAGATGCTGG
ACGTGAGAATAGATTTACATGCCCTGCCACCACCTCAAGGAGGGGACCAA
ATAGGGGTGTCAAGAGGGTAGAGGAAAGGAAGGAAGGGTGACGGGGACAG
AGAGAGCAAATGAATGGAGAGTGATTCTTGATTTCTCCTACCCGGATTAA
AAAAGAGTTGAACTTGTTCAAAATACTTACAGGGAAACGGATAAGCGTGT
CGTCATCGCCACCGCTGCACTAGGAGCAACGCCAACGACAAGAGAGCAAC
GGCATATGCGGGAGAAAATCGAGCAGCTGGAGCACGCACCAACGACGCGC
AACCGTGCGAGGAAAGAGTGATGGAAGCTGCAGCTGCAGCGACAAAAACA
GCAGCAGCAGCAGGAACAGCAGTGAAAAAATGACAAGGACGGGAACTTTA
CCTCCACAAATGACCCGAAAGCAATCAATTGACGAAACGACTT
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protein sequence of NO02G00580.2

>NO02G00580.2-protein ID=NO02G00580.2-protein|Name=NO02G00580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLA
LAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHR
SVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPH
SSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHST
LLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTH
RLVLKDMGEAERITEFLRRQKAVQQQLAATCVLREGMRARRRKDAAVEAR
GEGGEEEGGAGRGVVVNGYGGRRRTSGQCHHHHHHHHQQQQQQQQQQEQQ
QQHNEQHQEQQEQHMKDADGVEEGEGGGGGGGGGGGRGPVLRAGMGTTTM
KMVRRSSGGKRERGGGREGGVAMPSSVEMTSTAVVVTAEADDGGKGREWR
EEGGEGGKIAGGRGGGGGGRGGGGGLLRRVSSLFERQLQGLDGGQGGKDG
ETGGREGANGHNLIVGGDGETEGEVMVTMEMLDVRIDLHALPPPQGGDQI
GVSRG*
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mRNA from alignment at chr2:196439..199655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00580.2 ID=NO02G00580.2|Name=NO02G00580.2|organism=Nannochloropsis oceanica|type=mRNA|length=3217bp|location=Sequence derived from alignment at chr2:196439..199655- (Nannochloropsis oceanica)
CCCCGTCCTTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACA
CAATTTTAACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACT
CCTTCGAGGTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAG
CAAGTTCATCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCC
CACTTTGCCGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCT
GATGTCGTGATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCG
GACGTACTATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGC
GGTGTACTCACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCC
AAACGCTTGCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGC
CGGGACAATCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTG
ATAAAAAAAATAAGTAGAACGCACACTGCTTTCGTCCTCCTCGTCGCGCA
CATCCCACGACTTTAAAGCTGTCCTGGCCACTTCTCATTCCTAGGTAATC
AATGCCCGGACTAGATATGACGTGGCATTTTTCTCCTGTCTCCCTCTCCT
CATCCCTCCCTCCCAAATGTCATGGTCATCTACCCCCCCCCTACTTACCT
ATCTGACATCCTCTTCCTGACAGCATGGCGGACAAGAGAATAAAGCGGGG
TTGCGACCGCCATACCCGTTATTGTCCACAGAGAACAGCTTCCCCCCCCC
CTTCTCCATTATCTTTTCTCTGGCCGCGGCTGCTGTCACCCCTCGCCCAC
GTACTCACTCCCTTTTTCCTCCCTCCCCCCCTCCTTCCTTCCCTCCCTCC
CTCCCTCTCTCACTCCCACCCACCACGGCAAGCAAGGCCCACTTATCCAA
AGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACAC
TGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATG
CAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTG
GCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTG
CAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGGTAGGTGATACA
TCGTTTGGAAGGGTACCTCACCTCTGAGGGTAAATAAACCTCCCCCCCTC
TTCCCTTCCCCCCCCCAGGGCCCTGCCCTCCTTCCCCCCTTCCCCCCTTC
CATCCTTCGAGATAGTTCACGAACAAAAAACTAATCGTCTCCTCCCCCCC
CCCTTCCCCTTCCTGCTCCCCTCCCTTTCCCTCGTCCCCCCCCATACATG
CACTCCATTCAGCCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAG
ACCGGCTATGTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAA
CTTCGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCC
GCAACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCT
GTCAACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGGTATGTC
CGGGTACCTTGGCCTGGGGCGCGTCGACCATGCGCATTACTACATCTCCC
TCGTTCCCTCCCTCGTCTTCTCCCTCGTGTCCCTCATCATCGCCGCCACC
ATCCGAAGGTATGGAAAGCACTCCACCCTCCTCATCCCCCGCTCCTGCGG
CTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTC
CCGCCTCTTCTGCCTTTTACCCCTCCACGTCCATGGCAGGGTACACGGCA
TTCCTCGTCTGCGTCGTCTGCACGCACCGGCTGGTGCTCAAGGACATGGG
CGAGGCGGAGAGAATAACGGAATTTTTGCGGCGACAAAAGGCCGTGCAGC
AGCAGCTGGCCGCCACCTGCGTGCTGAGGGAGGGAATGAGGGCGAGGAGG
AGGAAGGACGCGGCGGTCGAGGCGCGGGGGGAGGGAGGGGAGGAGGAGGG
AGGAGCGGGGAGGGGTGTGGTTGTAAATGGATACGGGGGAAGGAGGAGGA
CGTCTGGTCAATGCCACCACCACCACCACCACCACCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCATAACGAACAGCATCA
GGAACAGCAGGAACAGCATATGAAGGACGCAGATGGGGTAGAAGAAGGGG
AAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGCGGGGTCCGGTGTTG
CGGGCGGGCATGGGAACCACGACGATGAAGATGGTCAGACGCTCGAGTGG
AGGGAAGAGAGAGAGAGGGGGAGGAAGGGAGGGAGGGGTTGCCATGCCTT
CTTCCGTTGAGATGACGTCTACTGCAGTGGTGGTAACAGCTGAAGCAGAT
GATGGCGGGAAAGGACGAGAATGGAGAGAAGAAGGGGGAGAAGGAGGAAA
AATAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGGCGCGGGGGAGGGGGGG
GGCTGCTGCGGCGCGTGAGTAGTTTGTTTGAAAGGCAGCTGCAAGGTCTG
GACGGAGGACAGGGAGGGAAGGATGGAGAGACGGGAGGGAGGGAGGGAGC
AAATGGTCACAACCTGATAGTAGGAGGTGATGGAGAGACGGAGGGAGAGG
TGATGGTGACGATGGAGATGCTGGACGTGAGAATAGATTTACATGCCCTG
CCACCACCTCAAGGAGGGGACCAAATAGGGGTGTCAAGAGGGTAGAGGAA
AGGAAGGAAGGGTGACGGGGACAGAGAGAGCAAATGAATGGAGAGTGATT
CTTGATTTCTCCTACCCGGATTAAAAAAGAGTTGAACTTGTTCAAAATAC
TTACAGGGAAACGGATAAGCGTGTCGTCATCGCCACCGCTGCACTAGGAG
CAACGCCAACGACAAGAGAGCAACGGCATATGCGGGAGAAAATCGAGCAG
CTGGAGCACGCACCAACGACGCGCAACCGTGCGAGGAAAGAGTGATGGAA
GCTGCAGCTGCAGCGACAAAAACAGCAGCAGCAGCAGGAACAGCAGTGAA
AAAATGACAAGGACGGGAACTTTACCTCCACAAATGACCCGAAAGCAATC
AATTGACGAAACGACTT
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Coding sequence (CDS) from alignment at chr2:196439..199655-

>NO02G00580.2 ID=NO02G00580.2|Name=NO02G00580.2|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr2:196439..199655- (Nannochloropsis oceanica)
ATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACACTGC
CTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATGCAG
CCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTGGCC
TTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTGCAG
CCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGCCATCATCCCCCCCC
TCTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACACCGT
TCCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGATAC
GTCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCCTCG
CCCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCCCAC
TCCTCCGAAAACGCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCGTCGA
CCATGCGCATTACTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCCCTCG
TGTCCCTCATCATCGCCGCCACCATCCGAAGGTATGGAAAGCACTCCACC
CTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTCGGT
GCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCTCCA
CGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACGCAC
CGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAATTTTT
GCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGCTGA
GGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCGCGG
GGGGAGGGAGGGGAGGAGGAGGGAGGAGCGGGGAGGGGTGTGGTTGTAAA
TGGATACGGGGGAAGGAGGAGGACGTCTGGTCAATGCCACCACCACCACC
ACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAG
CAGCAGCATAACGAACAGCATCAGGAACAGCAGGAACAGCATATGAAGGA
CGCAGATGGGGTAGAAGAAGGGGAAGGAGGAGGAGGGGGAGGAGGAGGAG
GAGGAGGGCGGGGTCCGGTGTTGCGGGCGGGCATGGGAACCACGACGATG
AAGATGGTCAGACGCTCGAGTGGAGGGAAGAGAGAGAGAGGGGGAGGAAG
GGAGGGAGGGGTTGCCATGCCTTCTTCCGTTGAGATGACGTCTACTGCAG
TGGTGGTAACAGCTGAAGCAGATGATGGCGGGAAAGGACGAGAATGGAGA
GAAGAAGGGGGAGAAGGAGGAAAAATAGCAGGAGGAAGAGGAGGAGGAGG
AGGAGGGCGCGGGGGAGGGGGGGGGCTGCTGCGGCGCGTGAGTAGTTTGT
TTGAAAGGCAGCTGCAAGGTCTGGACGGAGGACAGGGAGGGAAGGATGGA
GAGACGGGAGGGAGGGAGGGAGCAAATGGTCACAACCTGATAGTAGGAGG
TGATGGAGAGACGGAGGGAGAGGTGATGGTGACGATGGAGATGCTGGACG
TGAGAATAGATTTACATGCCCTGCCACCACCTCAAGGAGGGGACCAAATA
GGGGTGTCAAGAGGGTAG
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Synonyms
Publications