NO02G00420, NO02G00420 (gene) Nannochloropsis oceanica

Overview
NameNO02G00420
Unique NameNO02G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2240
Alignment locationchr2:147124..149363 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:147124..149363 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006625NSK006625Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00420.1NO02G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00420.1NO02G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00420 ID=NO02G00420|Name=NO02G00420|organism=Nannochloropsis oceanica|type=gene|length=2240bp
ATGCCCTACAAGAATTCTGAGGAAGAGATTGCGGTAGAAGTGAAGCGAGA
AGGTTGCCGGGAAGAGGGAAATGGAAATACGCAAGACCATTTTTTTCGCA
CTAATGCCTCCAAGTCCCTCACCTTTCAAGACATTCGTGTGACAGAGATG
CTGACCTTCGGGGGgtaaggcgtcaaagagctggattttgcttgtgtatt
tgaagagaattttacatctgtcctgcacctcgcttttgtttcagcctttc
ctttttttttcgttttccaaccactcctcctctccctcctccttttcccc
agACTCCCCCACACACTCAGCGTGCTCGTTGCCCAGGTACCACCCAATAC
AGAACTTTCTTTGCATATAAGCATTATAAAGCCTGCGCCGGAAAATCAGC
GATGGATAGGAGAGTACACGCGTCCATgtacgtaccagtgagggaaagag
acagaaagatcccaaaaaagaatataaagtgagggccatacctttcctca
aaaatgtacacgtggatttcgtcccgtttctttctgcttttgtcgtcctc
caaccacagATATAGAGGAACTTATCGGCCGTACTTCCGACAGCAGCCCC
GTCTCCTCATTTACCACATTTGTCCGCCTCCTTGTCAGCACCCTCCACAG
CCAATCGCAGGGTGAACGTGGAGTCCAGCAAGGGATAGTCGGAAAGGAAA
AGCGCGGAGCAGGGAATATTGAGTGGCCCACATCGGAAGAGCTGGAAGGA
CGCTTGCAGGCCGCCAGGAGGAGGAGGAAGGACACAGGTCCGCTCTCCAT
GACCACCACCACCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCAGCAAGCGGTACCTCATTTTGACGCACACAGCGGGTGTATCGCGAgta
tgttcgataacgagatcgagacagttgctttgggagtcttgcgtatcact
tctcactgttgccacgtcttctgacatttcccatccgcctttccttccct
ctacctgcaggtgcactacccccttcccctccgccgtctccagATCAGCT
GTGACACAGGTGATCCATCGCCTACTGCTGCCATTTCTTCTCCTACATCT
CCCTGTCCATTTGTGCTTTTTGACGCGACAGCCGCAGGGCAGgtatggca
gaggcgagcgggaggcggagtgttaagatctggtgggtcctagattgaca
ctaatctcatcttttcctccttttctgttaatcctgtagatgactcaagc
actcatgcttgatcttccacagGAAAGCAGCAGTAGCGATAGCATGGAGA
AGCATCTTCCTTCCGGCCCTTACTCCGCATCCCCTCCCCCTCCTCCCCCT
CCTTCGCCTCCCCTTCCTATTCCTTCTCCGGATCCTGCTCTCCTCCCTCT
ATCACAGACTGCAAGACCCGAGGAGgtaagttgacacacggaaacaaacc
ggacgtgtcgtgtcttctttgtgcgtttcttttgaccatgatcctgaccc
taatcccctctgtccgcagGCAAAGCAGGCCCTCCTGATCGACAACAGCT
GCTTAAAGCAAGCGGAACCTCCTTCCTTCCCTTTCGCTGTGCCTTCTGTT
CTTCCCCCTCGTTCTCATCTCCCTCCCCCCCTTCTCACGCTGGACCGACA
ACGCTCGGGCAGTGCGCCGGCCAAAGAGGGAGGTAGCGATCGCATCGCTA
CGCAAAGTTCCCTCCGCCGCGCAAAGGAGGCGGCTTACCGAAAGAAGATC
CAGAGATTAGAGgtatgtacgtatacataccgacctcctctgcccccatc
ttcttctcttcttatctccattcatccatctcttacttccttgggcctga
cttaaaatacagATTGCACTCGTCCGAGAAAAGCGAGAGGCGCAAAGTCT
TCACCTCCAGCACATGAAAGAGATGGCCAACATCCTCAAGCACCAAGAGG
TCAAATGCGCCTGTCGCATCAGTCGTGCCCAGGTGTTTCCCATCAATACC
GATGCTCTCTCGGAGAGTCGTACTCCCCCGAAACAGGCGAGCGTATTGGA
GGAAGGACGGTTTCCAACGGGCCCCAGCCAAGTCGTCGTTCCTCCTACTG
CTTCTCCTCACTCTACTCCTGCTGCAGGGGAGAGAGCAGGAATGCGGGTC
ATAAGCCTCCTTCCTTACCTTTTTCTCTTCCTTCTCCTAGCACTGGCGAT
TGTCTTGATTATTGTGCTGGCGCAAGGGCTCATGATGTAG
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protein sequence of NO02G00420.1

>NO02G00420.1-protein ID=NO02G00420.1-protein|Name=NO02G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MPYKNSEEEIAVEVKREGCREEGNGNTQDHFFRTNASKSLTFQDIRVTEM
LTFGGLPHTLSVLVAQVPPNTELSLHISIIKPAPENQRWIGEYTRPYIEE
LIGRTSDSSPVSSFTTFVRLLVSTLHSQSQGERGVQQGIVGKEKRGAGNI
EWPTSEELEGRLQAARRRRKDTGPLSMTTTTNISSSSSSSSSSISKRYLI
LTHTAGVSRISCDTGDPSPTAAISSPTSPCPFVLFDATAAGQESSSSDSM
EKHLPSGPYSASPPPPPPPSPPLPIPSPDPALLPLSQTARPEEAKQALLI
DNSCLKQAEPPSFPFAVPSVLPPRSHLPPPLLTLDRQRSGSAPAKEGGSD
RIATQSSLRRAKEAAYRKKIQRLEIALVREKREAQSLHLQHMKEMANILK
HQEVKCACRISRAQVFPINTDALSESRTPPKQASVLEEGRFPTGPSQVVV
PPTASPHSTPAAGERAGMRVISLLPYLFLFLLLALAIVLIIVLAQGLMM*
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Synonyms
Publications