NO02G00420.1, NO02G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00420.1
Unique NameNO02G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr2:147124..149363 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:147124..149363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00420NO02G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00420.1NO02G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00420.1.cds1NO02G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds2NO02G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds3NO02G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds4NO02G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds5NO02G00420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds6NO02G00420.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00420.1.cds7NO02G00420.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00420.1 ID=NO02G00420.1|Name=NO02G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATGCCCTACAAGAATTCTGAGGAAGAGATTGCGGTAGAAGTGAAGCGAGA
AGGTTGCCGGGAAGAGGGAAATGGAAATACGCAAGACCATTTTTTTCGCA
CTAATGCCTCCAAGTCCCTCACCTTTCAAGACATTCGTGTGACAGAGATG
CTGACCTTCGGGGGACTCCCCCACACACTCAGCGTGCTCGTTGCCCAGGT
ACCACCCAATACAGAACTTTCTTTGCATATAAGCATTATAAAGCCTGCGC
CGGAAAATCAGCGATGGATAGGAGAGTACACGCGTCCATATATAGAGGAA
CTTATCGGCCGTACTTCCGACAGCAGCCCCGTCTCCTCATTTACCACATT
TGTCCGCCTCCTTGTCAGCACCCTCCACAGCCAATCGCAGGGTGAACGTG
GAGTCCAGCAAGGGATAGTCGGAAAGGAAAAGCGCGGAGCAGGGAATATT
GAGTGGCCCACATCGGAAGAGCTGGAAGGACGCTTGCAGGCCGCCAGGAG
GAGGAGGAAGGACACAGGTCCGCTCTCCATGACCACCACCACCAACATCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAAGCGGTACCTCATT
TTGACGCACACAGCGGGTGTATCGCGAATCAGCTGTGACACAGGTGATCC
ATCGCCTACTGCTGCCATTTCTTCTCCTACATCTCCCTGTCCATTTGTGC
TTTTTGACGCGACAGCCGCAGGGCAGGAAAGCAGCAGTAGCGATAGCATG
GAGAAGCATCTTCCTTCCGGCCCTTACTCCGCATCCCCTCCCCCTCCTCC
CCCTCCTTCGCCTCCCCTTCCTATTCCTTCTCCGGATCCTGCTCTCCTCC
CTCTATCACAGACTGCAAGACCCGAGGAGGCAAAGCAGGCCCTCCTGATC
GACAACAGCTGCTTAAAGCAAGCGGAACCTCCTTCCTTCCCTTTCGCTGT
GCCTTCTGTTCTTCCCCCTCGTTCTCATCTCCCTCCCCCCCTTCTCACGC
TGGACCGACAACGCTCGGGCAGTGCGCCGGCCAAAGAGGGAGGTAGCGAT
CGCATCGCTACGCAAAGTTCCCTCCGCCGCGCAAAGGAGGCGGCTTACCG
AAAGAAGATCCAGAGATTAGAGATTGCACTCGTCCGAGAAAAGCGAGAGG
CGCAAAGTCTTCACCTCCAGCACATGAAAGAGATGGCCAACATCCTCAAG
CACCAAGAGGTCAAATGCGCCTGTCGCATCAGTCGTGCCCAGGTGTTTCC
CATCAATACCGATGCTCTCTCGGAGAGTCGTACTCCCCCGAAACAGGCGA
GCGTATTGGAGGAAGGACGGTTTCCAACGGGCCCCAGCCAAGTCGTCGTT
CCTCCTACTGCTTCTCCTCACTCTACTCCTGCTGCAGGGGAGAGAGCAGG
AATGCGGGTCATAAGCCTCCTTCCTTACCTTTTTCTCTTCCTTCTCCTAG
CACTGGCGATTGTCTTGATTATTGTGCTGGCGCAAGGGCTCATGATGTAG
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protein sequence of NO02G00420.1

>NO02G00420.1-protein ID=NO02G00420.1-protein|Name=NO02G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MPYKNSEEEIAVEVKREGCREEGNGNTQDHFFRTNASKSLTFQDIRVTEM
LTFGGLPHTLSVLVAQVPPNTELSLHISIIKPAPENQRWIGEYTRPYIEE
LIGRTSDSSPVSSFTTFVRLLVSTLHSQSQGERGVQQGIVGKEKRGAGNI
EWPTSEELEGRLQAARRRRKDTGPLSMTTTTNISSSSSSSSSSISKRYLI
LTHTAGVSRISCDTGDPSPTAAISSPTSPCPFVLFDATAAGQESSSSDSM
EKHLPSGPYSASPPPPPPPSPPLPIPSPDPALLPLSQTARPEEAKQALLI
DNSCLKQAEPPSFPFAVPSVLPPRSHLPPPLLTLDRQRSGSAPAKEGGSD
RIATQSSLRRAKEAAYRKKIQRLEIALVREKREAQSLHLQHMKEMANILK
HQEVKCACRISRAQVFPINTDALSESRTPPKQASVLEEGRFPTGPSQVVV
PPTASPHSTPAAGERAGMRVISLLPYLFLFLLLALAIVLIIVLAQGLMM*
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mRNA from alignment at chr2:147124..149363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00420.1 ID=NO02G00420.1|Name=NO02G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at chr2:147124..149363+ (Nannochloropsis oceanica)
ATGCCCTACAAGAATTCTGAGGAAGAGATTGCGGTAGAAGTGAAGCGAGA
AGGTTGCCGGGAAGAGGGAAATGGAAATACGCAAGACCATTTTTTTCGCA
CTAATGCCTCCAAGTCCCTCACCTTTCAAGACATTCGTGTGACAGAGATG
CTGACCTTCGGGGGGTAAGGCGTCAAAGAGCTGGATTTTGCTTGTGTATT
TGAAGAGAATTTTACATCTGTCCTGCACCTCGCTTTTGTTTCAGCCTTTC
CTTTTTTTTTCGTTTTCCAACCACTCCTCCTCTCCCTCCTCCTTTTCCCC
AGACTCCCCCACACACTCAGCGTGCTCGTTGCCCAGGTACCACCCAATAC
AGAACTTTCTTTGCATATAAGCATTATAAAGCCTGCGCCGGAAAATCAGC
GATGGATAGGAGAGTACACGCGTCCATGTACGTACCAGTGAGGGAAAGAG
ACAGAAAGATCCCAAAAAAGAATATAAAGTGAGGGCCATACCTTTCCTCA
AAAATGTACACGTGGATTTCGTCCCGTTTCTTTCTGCTTTTGTCGTCCTC
CAACCACAGATATAGAGGAACTTATCGGCCGTACTTCCGACAGCAGCCCC
GTCTCCTCATTTACCACATTTGTCCGCCTCCTTGTCAGCACCCTCCACAG
CCAATCGCAGGGTGAACGTGGAGTCCAGCAAGGGATAGTCGGAAAGGAAA
AGCGCGGAGCAGGGAATATTGAGTGGCCCACATCGGAAGAGCTGGAAGGA
CGCTTGCAGGCCGCCAGGAGGAGGAGGAAGGACACAGGTCCGCTCTCCAT
GACCACCACCACCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCAGCAAGCGGTACCTCATTTTGACGCACACAGCGGGTGTATCGCGAGTA
TGTTCGATAACGAGATCGAGACAGTTGCTTTGGGAGTCTTGCGTATCACT
TCTCACTGTTGCCACGTCTTCTGACATTTCCCATCCGCCTTTCCTTCCCT
CTACCTGCAGGTGCACTACCCCCTTCCCCTCCGCCGTCTCCAGATCAGCT
GTGACACAGGTGATCCATCGCCTACTGCTGCCATTTCTTCTCCTACATCT
CCCTGTCCATTTGTGCTTTTTGACGCGACAGCCGCAGGGCAGGTATGGCA
GAGGCGAGCGGGAGGCGGAGTGTTAAGATCTGGTGGGTCCTAGATTGACA
CTAATCTCATCTTTTCCTCCTTTTCTGTTAATCCTGTAGATGACTCAAGC
ACTCATGCTTGATCTTCCACAGGAAAGCAGCAGTAGCGATAGCATGGAGA
AGCATCTTCCTTCCGGCCCTTACTCCGCATCCCCTCCCCCTCCTCCCCCT
CCTTCGCCTCCCCTTCCTATTCCTTCTCCGGATCCTGCTCTCCTCCCTCT
ATCACAGACTGCAAGACCCGAGGAGGTAAGTTGACACACGGAAACAAACC
GGACGTGTCGTGTCTTCTTTGTGCGTTTCTTTTGACCATGATCCTGACCC
TAATCCCCTCTGTCCGCAGGCAAAGCAGGCCCTCCTGATCGACAACAGCT
GCTTAAAGCAAGCGGAACCTCCTTCCTTCCCTTTCGCTGTGCCTTCTGTT
CTTCCCCCTCGTTCTCATCTCCCTCCCCCCCTTCTCACGCTGGACCGACA
ACGCTCGGGCAGTGCGCCGGCCAAAGAGGGAGGTAGCGATCGCATCGCTA
CGCAAAGTTCCCTCCGCCGCGCAAAGGAGGCGGCTTACCGAAAGAAGATC
CAGAGATTAGAGGTATGTACGTATACATACCGACCTCCTCTGCCCCCATC
TTCTTCTCTTCTTATCTCCATTCATCCATCTCTTACTTCCTTGGGCCTGA
CTTAAAATACAGATTGCACTCGTCCGAGAAAAGCGAGAGGCGCAAAGTCT
TCACCTCCAGCACATGAAAGAGATGGCCAACATCCTCAAGCACCAAGAGG
TCAAATGCGCCTGTCGCATCAGTCGTGCCCAGGTGTTTCCCATCAATACC
GATGCTCTCTCGGAGAGTCGTACTCCCCCGAAACAGGCGAGCGTATTGGA
GGAAGGACGGTTTCCAACGGGCCCCAGCCAAGTCGTCGTTCCTCCTACTG
CTTCTCCTCACTCTACTCCTGCTGCAGGGGAGAGAGCAGGAATGCGGGTC
ATAAGCCTCCTTCCTTACCTTTTTCTCTTCCTTCTCCTAGCACTGGCGAT
TGTCTTGATTATTGTGCTGGCGCAAGGGCTCATGATGTAG
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Coding sequence (CDS) from alignment at chr2:147124..149363+

>NO02G00420.1 ID=NO02G00420.1|Name=NO02G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr2:147124..149363+ (Nannochloropsis oceanica)
ATGCCCTACAAGAATTCTGAGGAAGAGATTGCGGTAGAAGTGAAGCGAGA
AGGTTGCCGGGAAGAGGGAAATGGAAATACGCAAGACCATTTTTTTCGCA
CTAATGCCTCCAAGTCCCTCACCTTTCAAGACATTCGTGTGACAGAGATG
CTGACCTTCGGGGGACTCCCCCACACACTCAGCGTGCTCGTTGCCCAGGT
ACCACCCAATACAGAACTTTCTTTGCATATAAGCATTATAAAGCCTGCGC
CGGAAAATCAGCGATGGATAGGAGAGTACACGCGTCCATATATAGAGGAA
CTTATCGGCCGTACTTCCGACAGCAGCCCCGTCTCCTCATTTACCACATT
TGTCCGCCTCCTTGTCAGCACCCTCCACAGCCAATCGCAGGGTGAACGTG
GAGTCCAGCAAGGGATAGTCGGAAAGGAAAAGCGCGGAGCAGGGAATATT
GAGTGGCCCACATCGGAAGAGCTGGAAGGACGCTTGCAGGCCGCCAGGAG
GAGGAGGAAGGACACAGGTCCGCTCTCCATGACCACCACCACCAACATCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAAGCGGTACCTCATT
TTGACGCACACAGCGGGTGTATCGCGAATCAGCTGTGACACAGGTGATCC
ATCGCCTACTGCTGCCATTTCTTCTCCTACATCTCCCTGTCCATTTGTGC
TTTTTGACGCGACAGCCGCAGGGCAGGAAAGCAGCAGTAGCGATAGCATG
GAGAAGCATCTTCCTTCCGGCCCTTACTCCGCATCCCCTCCCCCTCCTCC
CCCTCCTTCGCCTCCCCTTCCTATTCCTTCTCCGGATCCTGCTCTCCTCC
CTCTATCACAGACTGCAAGACCCGAGGAGGCAAAGCAGGCCCTCCTGATC
GACAACAGCTGCTTAAAGCAAGCGGAACCTCCTTCCTTCCCTTTCGCTGT
GCCTTCTGTTCTTCCCCCTCGTTCTCATCTCCCTCCCCCCCTTCTCACGC
TGGACCGACAACGCTCGGGCAGTGCGCCGGCCAAAGAGGGAGGTAGCGAT
CGCATCGCTACGCAAAGTTCCCTCCGCCGCGCAAAGGAGGCGGCTTACCG
AAAGAAGATCCAGAGATTAGAGATTGCACTCGTCCGAGAAAAGCGAGAGG
CGCAAAGTCTTCACCTCCAGCACATGAAAGAGATGGCCAACATCCTCAAG
CACCAAGAGGTCAAATGCGCCTGTCGCATCAGTCGTGCCCAGGTGTTTCC
CATCAATACCGATGCTCTCTCGGAGAGTCGTACTCCCCCGAAACAGGCGA
GCGTATTGGAGGAAGGACGGTTTCCAACGGGCCCCAGCCAAGTCGTCGTT
CCTCCTACTGCTTCTCCTCACTCTACTCCTGCTGCAGGGGAGAGAGCAGG
AATGCGGGTCATAAGCCTCCTTCCTTACCTTTTTCTCTTCCTTCTCCTAG
CACTGGCGATTGTCTTGATTATTGTGCTGGCGCAAGGGCTCATGATGTAG
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Synonyms
Publications