NO02G00260, NO02G00260 (gene) Nannochloropsis oceanica

Overview
NameNO02G00260
Unique NameNO02G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3640
Alignment locationchr2:92322..95961 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:92322..95961 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036908RlpA-like_sf
Homology
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BLAST of NO02G00260 vs. NCBI_GenBank
Match: XP_005854571.1 (hypothetical protein NGA_0225800 [Nannochloropsis gaditana CCMP526] >EKU21787.1 hypothetical protein NGA_0225800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.1 bits (671), Expect = 8.100e-67
Identity = 128/177 (72.32%), Postives = 148/177 (83.62%), Query Frame = 0 
Query:   51 ASSASAFSGQSTFYGAGGAGQGGACMLPRGFNGVGVTVAMNQAQYE--GSCGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAASAWSQLPGGR-RNLRGADDASPDASKPLMLGPGMYVMPDGIKDLDTVKAM-FHAGNGTAVAAALS 224
            A+ +SA+ G +TFYG GGAGQGGACML RGFNGVG+TVA+NQAQ++  GSCGKCIKLTG GDG G TPV+GPI+ATVDNLCPECSFGDIDLGLGGDGRWQ  WDFVDCG A S WS +PG R RNLRG  +A  DASKPLM+GPGMY+MP+G+KDL  VKA+  H+GN T +AA +S
Sbjct:   12 ATLSSAYDGDATFYGQGGAGQGGACMLERGFNGVGITVAINQAQWDGAGSCGKCIKLTGNGDGSGMTPVVGPIYATVDNLCPECSFGDIDLGLGGDGRWQAHWDFVDCGEARSGWSSVPGQRLRNLRGGVEA--DASKPLMIGPGMYLMPEGVKDLSEVKALAAHSGNATVMAAEMS 186
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BLAST of NO02G00260 vs. NCBI_GenBank
Match: EWM30607.1 (Barwin-related endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 95.1 bits (235), Expect = 2.900e-16
Identity = 48/107 (44.86%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:   59 GQSTFYGAGGAGQGGAC--------MLPRGFNGVGVTVAMNQAQYE-GSCGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDC 157
            G+ST+Y  G  G GGAC         +P    G+  TVA++Q Q++ G CG CI L G G G GG PV G   A V+NLCPEC +G +D  L GDG W+ +W  + C
Sbjct:   40 GRSTYY--GNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQFDVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPC 144
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BLAST of NO02G00260 vs. NCBI_GenBank
Match: BAK20041.1 (hypothetical protein [Gracilariopsis andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 8.500e-16
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:   57 FSGQSTFYGAGGAGQGG-ACMLPRGFNGVGVTVAMNQAQYE--GSCGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDC 157
            F G  T+YG    G       LP  ++G+ V VA+N AQYE   SCG C+ +TG G G G  PV+G   A V + CPEC +GDIDL   GDGRW+ QW F+ C
Sbjct:   24 FFGDGTYYGYTTRGNCAIRSPLPGMYSGM-VPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPC 125
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BLAST of NO02G00260 vs. NCBI_GenBank
Match: PVD19298.1 (hypothetical protein C0Q70_19785 [Pomacea canaliculata])

HSP 1 Score: 90.1 bits (222), Expect = 9.400e-15
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 0 
Query:   55 SAFSGQSTFYGAGGAGQGGACML----PRGFNGVGVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDC 157
            S F G  T+YG+ G   GG C      P   +G    VA+N  Q+  S  CG C ++TG G G G +P+ G     VDNLCPEC  GD+DLG+ GDGRW      V C
Sbjct:   31 STFKGDGTYYGSSGG--GGTCSYGVQNPPAASGTKYPVALNSPQFMNSVMCGSCWRVTGAGTGSGHSPITGTFTVFVDNLCPECHAGDLDLGVSGDGRWDITIQAVQC 136
[Close]
BLAST of NO02G00260 vs. NCBI_GenBank
Match: OSX68463.1 (hypothetical protein BU14_2757s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 89.0 bits (219), Expect = 2.100e-14
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 0 
Query:   58 SGQSTFYGAGGAGQGGACMLPRGFNGVGVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAASA 163
            +G+ T++G    G      LP  + G+ V VA++ A Y GS  CG C+++TG GDG G  P+ G   A V + CPEC+ GD+DL   GDGRW   W  V C  A  A
Sbjct:   49 AGEGTYFGPTTRGNCALDPLPAQYGGL-VGVAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGA 154
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BLAST of NO02G00260 vs. NCBI_GenBank
Match: CBN74372.1 (putative lipoprotein [Ectocarpus siliculosus])

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-14
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 0 
Query:   57 FSGQSTFYGAGGAGQGGACM---LPRGFNGVGVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDC 157
            FSG +T+YG    G G   +   LP  ++G+ + VA+N  QY  S  CG CI+  G G+G G  PV G   A V + CPEC FGD+D    GDGRW   W FV C
Sbjct:   41 FSGDATYYGVTPDGDGNCAIRSPLPEMYDGM-IPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPC 144
[Close]
BLAST of NO02G00260 vs. NCBI_GenBank
Match: PRP75418.1 (hypothetical protein PROFUN_15758 [Planoprotostelium fungivorum])

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-14
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 0 
Query:   58 SGQSTFYGA-GGAGQGGACMLPRGFNGV--GVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAAS 162
            SG  T+YG    +G  G   +P   +    G+ VAMN  QY GS  CG C+++TG G G G  P+ G     V++ CPEC  GD+DL   GDGRW+  W  VDC +  S
Sbjct:   26 SGDGTYYGPDNNSGNCGIYPVPSQISSATQGLNVAMNAPQYFGSAACGLCLQVTGNGTGSGSNPITGTFLVFVNDQCPECKPGDLDLAKNGDGRWKISWKVVDCPVGDS 134
[Close]
BLAST of NO02G00260 vs. NCBI_GenBank
Match: PRP88010.1 (hypothetical protein PROFUN_04438 [Planoprotostelium fungivorum])

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-14
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 0 
Query:   58 SGQSTFYGA-GGAGQGGACMLPRGFNGV--GVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAAS 162
            SG  T+YG    +G  G   +P   +    G+ VAMN  QY GS  CG C+++TG G G G  P+ G     V++ CPEC  GD+DL   GDGRW+  W  VDC +  S
Sbjct:   26 SGDGTYYGPDNNSGNCGIYPVPSQISSATQGLNVAMNAPQYFGSAACGLCLQVTGNGTGSGSNPITGTFLVFVNDQCPECKPGDLDLAKNGDGRWKISWKVVDCPVGDS 134
[Close]
BLAST of NO02G00260 vs. NCBI_GenBank
Match: XP_005651977.1 (hypothetical protein COCSUDRAFT_39101 [Coccomyxa subellipsoidea C-169] >EIE27433.1 hypothetical protein COCSUDRAFT_39101 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 87.4 bits (215), Expect = 6.100e-14
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:   58 SGQSTFYG-AGGAGQGGACMLPRGFN---------GVGVTVAMNQAQYEGS--CGKCIKLTGQGDGLGGTPVIGP-IFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAASAWSQLPGGRRN 173
            S   T+YG   G   GGAC   + F+         GV   +A+N+AQY  S  CG+C+   G G G+G  P+     F  VDN+CPEC++G IDL   GDGRW+ +W  + C +    +    GG  N
Sbjct:  236 SASGTYYGQQDGQNDGGACAFGKSFSNSLGLSWREGVQTYIALNRAQYNNSQACGQCLMYRGLGAGIGMLPIPSEWQFGLVDNVCPECAYGSIDLDKNGDGRWKVEWYPIPCNVGEGKFHYFFGGSPN 363
[Close]
BLAST of NO02G00260 vs. NCBI_GenBank
Match: XP_005650571.1 (hypothetical protein COCSUDRAFT_40205 [Coccomyxa subellipsoidea C-169] >EIE26027.1 hypothetical protein COCSUDRAFT_40205 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-13
Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = 0 
Query:   59 GQSTFYG-AGGAGQGGACMLPRGF---------NGVGVTVAMNQAQYE--GSCGKCIKLTGQGDGLGGTPVIGPIFAT--VDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMA 160
            G+ TFYG   G    G C     F         +G  +T+A+N AQ+E    CG CIK  G G GLG TP     + T  V+N CPEC+FGDID+   GDGRW+ +W  V C +A
Sbjct:   38 GEGTFYGQQDGQDAQGTCSYNENFANTVKLPWSSGTDMTIALNDAQFENGNGCGLCIKFRGTGAGLGTTPPSTTEWKTGFVNNRCPECAFGDIDMNSRGDGRWKVEWYAVPCNVA 152
The following BLAST results are available for this feature:
BLAST of NO02G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854571.18.100e-6772.32hypothetical protein NGA_0225800 [Nannochloropsis ... [more]
EWM30607.12.900e-1644.86Barwin-related endoglucanase [Nannochloropsis gadi... [more]
BAK20041.18.500e-1647.57hypothetical protein [Gracilariopsis andersonii][more]
PVD19298.19.400e-1543.52hypothetical protein C0Q70_19785 [Pomacea canalicu... [more]
OSX68463.12.100e-1442.06hypothetical protein BU14_2757s0001, partial [Porp... [more]
CBN74372.13.600e-1444.76putative lipoprotein [Ectocarpus siliculosus][more]
PRP75418.13.600e-1442.20hypothetical protein PROFUN_15758 [Planoprotosteli... [more]
PRP88010.13.600e-1442.20hypothetical protein PROFUN_04438 [Planoprotosteli... [more]
XP_005651977.16.100e-1437.50hypothetical protein COCSUDRAFT_39101 [Coccomyxa s... [more]
XP_005650571.11.400e-1342.61hypothetical protein COCSUDRAFT_40205 [Coccomyxa s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006600NSK006600Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00260.1NO02G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610099gene_10185Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00260.1NO02G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00260 ID=NO02G00260|Name=NO02G00260|organism=Nannochloropsis oceanica|type=gene|length=3640bp
TGTTTATTTGGTTATTTTTTTTAATTTCTTTTCAAGGTTTGCCTTCCCTC
CCCTGATCTGCAGCTTTCCTCTATGGGCTCATTTCCGCCATTACATTGGC
TCGCCATATGAGATGCACGCTATCCGATCAAGGGGGCGGTGCAGCATTTG
TTGCCATCGCACCAGGCGGGGAGACGACAGACTGGGCTTCTACAAAGGTA
AGCGCGCACATACAGCACGCCATTCGTTAAAGCTAGCCTTGTGTGCGCGC
ATCCCGCACATGCTCCACGACGATTTCGGAAAACCAATAAAACGAGAACG
CAAGAGCGAAAAAAAGGAGAAGCATATCTATAGCACGATTTAAATCTTGT
CCACCCCATTCGCTGCAGTTGGATGTGGCCACCTGCCAGCCTCCCATGAC
GAAAGGCACAATTTCAGACAAGTATGATCTCCAAAATGCACCAAATTCAT
GGACTACGAGGTCGAGAGCGAAAAAAAGGATGAGGGAAATGGCAAGCGGA
ATAGAAGGCATTGGTCCTACGACATAACTACGGGTGCGGGTGGGGTCCTA
CGAATCTTCTTTCGCGGGACTGACTCGTGCGCCCCCTCCTGTGGTGGGAC
TGAGGGTGTCATCCCCTGAAAGGAGAAGATCCCGCCTGTGCGCCAACCAC
GCGCTGTGGTACCCATACATTGGCATATGTATCGAATTGTTTTTTCCCCT
GCGTGTCACATAATCGGGTTGTGGTATTTTGGGTACCAGCTCTCCAAAAG
CGCCGACGTGCGTGGCGAAATGAAAATAAAATAACATGGCACCTCCCGCC
GCAAGCAGATCGGCTCGTTGCGTCCCACTGTCCTACATGAGTTCCTACTC
TCACTCTCTCACTTGGACAAGCACAACAATGCCTGTCGCGATTCGCATCT
CTGGTGTGCCTGCATGGTGCTATGATGGCTTTTGTTATCGTCGGTTGCTT
TTGTTCCCGAGTCGCCGCGGGACGGTGACGAGGAACAACGGTCTTATCCC
CCTCACGGTCAAGACCAAAAACGCAAGCGGCGGGATGCACCCCTCAACGA
ATCGAAGTGGCACAAAAATTAAAATCTATGTTGATTAGAGTGCGAGCTTT
GTTTGTTTGTCTTGCGATGGTCTTTCTCTTTGTACATTCTTGCTTGTGGT
CATCCTATGGTGGTTACATGGCCAAGCTTACTACCGAACAGCGCCGCGAC
ACACCCTCGCTAGTGGACGTAGCACTTTTACTAGGATTGGTAAATGTCTG
GGTGTCCCTTAGTAGACACTACAGACGTTCTTTCGTTCCTGGCTCACTTT
CTGCACTATTTACCCGTGCACACACAGCCACCACCACCAACCACCACCCT
CTCAACAACAATGATGAAGTCTATCGCTTTCCTCTTGGCTTTCGCCTCCT
CCGCTTCTGCTTTCAGTGGGCAGgtaagcacgacaagtagtggtggcact
acgggcgggacgggaggggaaagatctacagctacacgtatgctgaatca
gagccacacctggacccacctctcctttgtctcccttttcacctattctc
ccctctcacacctcacccgcaacaagctgctcgcgagagtgtgcgaaagt
gtacatatcccatctccgccctggcggccaccaccgcccgtccacccgta
cccacttacaaccacgtgtttcacatatcttccctgtccctcttccctca
ttccattcccagcccacctcttctcgcgcacgcataaccactcacggctt
caccccttcccctcccgacgctctttgacagccatccccacttgtcggct
acatacatagcgaggccataccacagcgaacccgacgtacctagctacaa
tcccacaccacacacacccagacatccacaaactcacatccacacacacc
tctctcctaatctcgcacaccttccacatcctacacatcgccacccctcc
ttaccctcccacccttcctcaccgtttcctttttcccacagTCGACATTC
TACGGCGCGGGCGGCGCCGGTCAGGGCGGTGCCTGTATGCTTCCGCGAGG
GTTTAATGGCGTGGGTGTAACTGTGGCCATGAACCAGGCTCAGTATGAAG
GCTCCTGCGGCAAGTGTATCAAGgtacgtttctgtggcggtgagggcatg
gaaactgccgcggcgtttcttgggctttcatctcgtgtctctcgtcgagg
aactttccctccatgtctccatcacgcccttaaccctaactaattatttc
ccttccatgcctgtctctctcgtcactccattctaccccccttccatagC
TGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCATC
TTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCGA
CCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTGG
ACTGCGgtaagtcacccgcaaaagatggggagagggaagggggttgaggg
atgatgatagatgtcgaccgtcgtgtgaacgttgactccctcgtcgctca
ccttttcccatttctatcctggaacacgaacgaatagGCATGGCTGCTTC
CGCCTGGTCTCAGCTACCCGGAGGCAGGCGTAACCTCCGTGGCGCGGACG
ATGCGTCTCCGGATGCGTCCAAGCCCTTGATGCTCGGCCCGGGCATGTAC
GTGATGCCCGACGGCATCAAGGACTTGGACACTGTCAAGGCCATGTTCCA
TGCAGGCAACGGGACCGCCGTCGCCGCCGCCCTAAGTGGAGGGAACTAAG
GAGAGGCAGGGAGAGCAGGGAACGCTGACGAGAGGGTCGTCCTTTCCCTT
ATTTTTGATTATTTGTGTGCGGTGTCCCGGCCTTGTTACGGTCGGGTGAT
TTTGAGTTAAAGAATTGGACGGCGATCGATAAAGTGTGAGTTAATGCAAG
TAAATTATCAATTGCGGGCAGATGAGGTCCTAGAGGTGGGAGGCGAGTGG
GCAGCTGCGGGCAGAGGTACTGTGATCAGTTGAGTGGTTCACCATGTGAG
GAACTGAGACGGAAAGAACGACCTTAATAAAAACCTGAAAAGAAAATGGG
TTGGTACAGTAGAGGTCGGCCACGGCCGAGTGACTGTGGTTACGGCTACA
TGTGAGTGAGAAGGAGTGAAGGAGAAATTGGGAGCTCGACACTACATGCC
CGGGCGCCTGAAAACAATTCAGAAAAACGGAAATGAAGACCTCAAAGAAA
AATGGTTCTTTCTAATAGAAAGGTCGCCCTGACTACGCATGCTCTGCGTG
TGTGAGAGACAGAGAGAGAGAGTCTGTGGATGTGATGTGGCTGACCTGTG
TGCTTCTAGACGGGGAAATTATAAAAGACAAAATATTAAAAAAAACGAGA
GAACCCAGAAGAGGAAAACGTGGCTCATTATGCAGGTCCTTTGGATGGAT
TGAACGTTGGTAGAGCTGTGTCGGTACGTGTGTGTGATAGAGAACGAGAA
AGACAATAGGAGAATAGATGGAGCGTCCAGGGATTGGGGCTGAGAGGCAC
GTCGACCGGGGGTCTTGTTGGTTGGTTGAGGTCAGAGAGAGAGAGAGGAA
CCATCGAAATGAAAAAAAAAGGGAACCGTGAAATACGAAA
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protein sequence of NO02G00260.1

>NO02G00260.1-protein ID=NO02G00260.1-protein|Name=NO02G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MSGCPLVDTTDVLSFLAHFLHYLPVHTQPPPPTTTLSTTMMKSIAFLLAF
ASSASAFSGQSTFYGAGGAGQGGACMLPRGFNGVGVTVAMNQAQYEGSCG
KCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQ
WDFVDCGMAASAWSQLPGGRRNLRGADDASPDASKPLMLGPGMYVMPDGI
KDLDTVKAMFHAGNGTAVAAALSGGN*
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Synonyms
Publications