NO02G00260.1, NO02G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00260.1
Unique NameNO02G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2765
Alignment locationchr2:92322..95961 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:92322..95961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00260.1 vs.
Match: XP_005854571.1 (hypothetical protein NGA_0225800 [Nannochloropsis gaditana CCMP526]; EKU21787.1 hypothetical protein NGA_0225800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.5 bits (698), Expect = 6.000e-70
Identity = 136/188 (72.34%), Postives = 156/188 (82.98%), Query Frame = 0 
Query:   40 MMKSIAFLLAFASSASAFSGQSTFYGAGGAGQGGACMLPRGFNGVGVTVAMNQAQYE--GSCGKCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAASAWSQLPGGR-RNLRGADDASPDASKPLMLGPGMYVMPDGIKDLDTVKAM-FHAGNGTAVAAALS 224
            MMKSIA  LA A+ +SA+ G +TFYG GGAGQGGACML RGFNGVG+TVA+NQAQ++  GSCGKCIKLTG GDG G TPV+GPI+ATVDNLCPECSFGDIDLGLGGDGRWQ  WDFVDCG A S WS +PG R RNLRG  +A  DASKPLM+GPGMY+MP+G+KDL  VKA+  H+GN T +AA +S
Sbjct:    1 MMKSIALALACATLSSAYDGDATFYGQGGAGQGGACMLERGFNGVGITVAINQAQWDGAGSCGKCIKLTGNGDGSGMTPVVGPIYATVDNLCPECSFGDIDLGLGGDGRWQAHWDFVDCGEARSGWSSVPGQRLRNLRGGVEA--DASKPLMIGPGMYLMPEGVKDLSEVKALAAHSGNATVMAAEMS 186
The following BLAST results are available for this feature:
BLAST of NO02G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854571.16.000e-7072.34hypothetical protein NGA_0225800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00260NO02G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00260.1NO02G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00260.1.cds1NO02G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00260.1.cds2NO02G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00260.1.cds3NO02G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00260.1.cds4NO02G00260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00260.1 ID=NO02G00260.1|Name=NO02G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2765bp
TGTTTATTTGGTTATTTTTTTTAATTTCTTTTCAAGGTTTGCCTTCCCTC
CCCTGATCTGCAGCTTTCCTCTATGGGCTCATTTCCGCCATTACATTGGC
TCGCCATATGAGATGCACGCTATCCGATCAAGGGGGCGGTGCAGCATTTG
TTGCCATCGCACCAGGCGGGGAGACGACAGACTGGGCTTCTACAAAGGTA
AGCGCGCACATACAGCACGCCATTCGTTAAAGCTAGCCTTGTGTGCGCGC
ATCCCGCACATGCTCCACGACGATTTCGGAAAACCAATAAAACGAGAACG
CAAGAGCGAAAAAAAGGAGAAGCATATCTATAGCACGATTTAAATCTTGT
CCACCCCATTCGCTGCAGTTGGATGTGGCCACCTGCCAGCCTCCCATGAC
GAAAGGCACAATTTCAGACAAGTATGATCTCCAAAATGCACCAAATTCAT
GGACTACGAGGTCGAGAGCGAAAAAAAGGATGAGGGAAATGGCAAGCGGA
ATAGAAGGCATTGGTCCTACGACATAACTACGGGTGCGGGTGGGGTCCTA
CGAATCTTCTTTCGCGGGACTGACTCGTGCGCCCCCTCCTGTGGTGGGAC
TGAGGGTGTCATCCCCTGAAAGGAGAAGATCCCGCCTGTGCGCCAACCAC
GCGCTGTGGTACCCATACATTGGCATATGTATCGAATTGTTTTTTCCCCT
GCGTGTCACATAATCGGGTTGTGGTATTTTGGGTACCAGCTCTCCAAAAG
CGCCGACGTGCGTGGCGAAATGAAAATAAAATAACATGGCACCTCCCGCC
GCAAGCAGATCGGCTCGTTGCGTCCCACTGTCCTACATGAGTTCCTACTC
TCACTCTCTCACTTGGACAAGCACAACAATGCCTGTCGCGATTCGCATCT
CTGGTGTGCCTGCATGGTGCTATGATGGCTTTTGTTATCGTCGGTTGCTT
TTGTTCCCGAGTCGCCGCGGGACGGTGACGAGGAACAACGGTCTTATCCC
CCTCACGGTCAAGACCAAAAACGCAAGCGGCGGGATGCACCCCTCAACGA
ATCGAAGTGGCACAAAAATTAAAATCTATGTTGATTAGAGTGCGAGCTTT
GTTTGTTTGTCTTGCGATGGTCTTTCTCTTTGTACATTCTTGCTTGTGGT
CATCCTATGGTGGTTACATGGCCAAGCTTACTACCGAACAGCGCCGCGAC
ACACCCTCGCTAGTGGACGTAGCACTTTTACTAGGATTGGTAAATGTCTG
GGTGTCCCTTAGTAGACACTACAGACGTTCTTTCGTTCCTGGCTCACTTT
CTGCACTATTTACCCGTGCACACACAGCCACCACCACCAACCACCACCCT
CTCAACAACAATGATGAAGTCTATCGCTTTCCTCTTGGCTTTCGCCTCCT
CCGCTTCTGCTTTCAGTGGGCAGTCGACATTCTACGGCGCGGGCGGCGCC
GGTCAGGGCGGTGCCTGTATGCTTCCGCGAGGGTTTAATGGCGTGGGTGT
AACTGTGGCCATGAACCAGGCTCAGTATGAAGGCTCCTGCGGCAAGTGTA
TCAAGCTGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGG
CCCATCTTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGA
TATCGACCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACT
TCGTGGACTGCGGCATGGCTGCTTCCGCCTGGTCTCAGCTACCCGGAGGC
AGGCGTAACCTCCGTGGCGCGGACGATGCGTCTCCGGATGCGTCCAAGCC
CTTGATGCTCGGCCCGGGCATGTACGTGATGCCCGACGGCATCAAGGACT
TGGACACTGTCAAGGCCATGTTCCATGCAGGCAACGGGACCGCCGTCGCC
GCCGCCCTAAGTGGAGGGAACTAAGGAGAGGCAGGGAGAGCAGGGAACGC
TGACGAGAGGGTCGTCCTTTCCCTTATTTTTGATTATTTGTGTGCGGTGT
CCCGGCCTTGTTACGGTCGGGTGATTTTGAGTTAAAGAATTGGACGGCGA
TCGATAAAGTGTGAGTTAATGCAAGTAAATTATCAATTGCGGGCAGATGA
GGTCCTAGAGGTGGGAGGCGAGTGGGCAGCTGCGGGCAGAGGTACTGTGA
TCAGTTGAGTGGTTCACCATGTGAGGAACTGAGACGGAAAGAACGACCTT
AATAAAAACCTGAAAAGAAAATGGGTTGGTACAGTAGAGGTCGGCCACGG
CCGAGTGACTGTGGTTACGGCTACATGTGAGTGAGAAGGAGTGAAGGAGA
AATTGGGAGCTCGACACTACATGCCCGGGCGCCTGAAAACAATTCAGAAA
AACGGAAATGAAGACCTCAAAGAAAAATGGTTCTTTCTAATAGAAAGGTC
GCCCTGACTACGCATGCTCTGCGTGTGTGAGAGACAGAGAGAGAGAGTCT
GTGGATGTGATGTGGCTGACCTGTGTGCTTCTAGACGGGGAAATTATAAA
AGACAAAATATTAAAAAAAACGAGAGAACCCAGAAGAGGAAAACGTGGCT
CATTATGCAGGTCCTTTGGATGGATTGAACGTTGGTAGAGCTGTGTCGGT
ACGTGTGTGTGATAGAGAACGAGAAAGACAATAGGAGAATAGATGGAGCG
TCCAGGGATTGGGGCTGAGAGGCACGTCGACCGGGGGTCTTGTTGGTTGG
TTGAGGTCAGAGAGAGAGAGAGGAACCATCGAAATGAAAAAAAAAGGGAA
CCGTGAAATACGAAA
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protein sequence of NO02G00260.1

>NO02G00260.1-protein ID=NO02G00260.1-protein|Name=NO02G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MSGCPLVDTTDVLSFLAHFLHYLPVHTQPPPPTTTLSTTMMKSIAFLLAF
ASSASAFSGQSTFYGAGGAGQGGACMLPRGFNGVGVTVAMNQAQYEGSCG
KCIKLTGQGDGLGGTPVIGPIFATVDNLCPECSFGDIDLGLGGDGRWQTQ
WDFVDCGMAASAWSQLPGGRRNLRGADDASPDASKPLMLGPGMYVMPDGI
KDLDTVKAMFHAGNGTAVAAALSGGN*
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mRNA from alignment at chr2:92322..95961+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00260.1 ID=NO02G00260.1|Name=NO02G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=3640bp|location=Sequence derived from alignment at chr2:92322..95961+ (Nannochloropsis oceanica)
TGTTTATTTGGTTATTTTTTTTAATTTCTTTTCAAGGTTTGCCTTCCCTC
CCCTGATCTGCAGCTTTCCTCTATGGGCTCATTTCCGCCATTACATTGGC
TCGCCATATGAGATGCACGCTATCCGATCAAGGGGGCGGTGCAGCATTTG
TTGCCATCGCACCAGGCGGGGAGACGACAGACTGGGCTTCTACAAAGGTA
AGCGCGCACATACAGCACGCCATTCGTTAAAGCTAGCCTTGTGTGCGCGC
ATCCCGCACATGCTCCACGACGATTTCGGAAAACCAATAAAACGAGAACG
CAAGAGCGAAAAAAAGGAGAAGCATATCTATAGCACGATTTAAATCTTGT
CCACCCCATTCGCTGCAGTTGGATGTGGCCACCTGCCAGCCTCCCATGAC
GAAAGGCACAATTTCAGACAAGTATGATCTCCAAAATGCACCAAATTCAT
GGACTACGAGGTCGAGAGCGAAAAAAAGGATGAGGGAAATGGCAAGCGGA
ATAGAAGGCATTGGTCCTACGACATAACTACGGGTGCGGGTGGGGTCCTA
CGAATCTTCTTTCGCGGGACTGACTCGTGCGCCCCCTCCTGTGGTGGGAC
TGAGGGTGTCATCCCCTGAAAGGAGAAGATCCCGCCTGTGCGCCAACCAC
GCGCTGTGGTACCCATACATTGGCATATGTATCGAATTGTTTTTTCCCCT
GCGTGTCACATAATCGGGTTGTGGTATTTTGGGTACCAGCTCTCCAAAAG
CGCCGACGTGCGTGGCGAAATGAAAATAAAATAACATGGCACCTCCCGCC
GCAAGCAGATCGGCTCGTTGCGTCCCACTGTCCTACATGAGTTCCTACTC
TCACTCTCTCACTTGGACAAGCACAACAATGCCTGTCGCGATTCGCATCT
CTGGTGTGCCTGCATGGTGCTATGATGGCTTTTGTTATCGTCGGTTGCTT
TTGTTCCCGAGTCGCCGCGGGACGGTGACGAGGAACAACGGTCTTATCCC
CCTCACGGTCAAGACCAAAAACGCAAGCGGCGGGATGCACCCCTCAACGA
ATCGAAGTGGCACAAAAATTAAAATCTATGTTGATTAGAGTGCGAGCTTT
GTTTGTTTGTCTTGCGATGGTCTTTCTCTTTGTACATTCTTGCTTGTGGT
CATCCTATGGTGGTTACATGGCCAAGCTTACTACCGAACAGCGCCGCGAC
ACACCCTCGCTAGTGGACGTAGCACTTTTACTAGGATTGGTAAATGTCTG
GGTGTCCCTTAGTAGACACTACAGACGTTCTTTCGTTCCTGGCTCACTTT
CTGCACTATTTACCCGTGCACACACAGCCACCACCACCAACCACCACCCT
CTCAACAACAATGATGAAGTCTATCGCTTTCCTCTTGGCTTTCGCCTCCT
CCGCTTCTGCTTTCAGTGGGCAGGTAAGCACGACAAGTAGTGGTGGCACT
ACGGGCGGGACGGGAGGGGAAAGATCTACAGCTACACGTATGCTGAATCA
GAGCCACACCTGGACCCACCTCTCCTTTGTCTCCCTTTTCACCTATTCTC
CCCTCTCACACCTCACCCGCAACAAGCTGCTCGCGAGAGTGTGCGAAAGT
GTACATATCCCATCTCCGCCCTGGCGGCCACCACCGCCCGTCCACCCGTA
CCCACTTACAACCACGTGTTTCACATATCTTCCCTGTCCCTCTTCCCTCA
TTCCATTCCCAGCCCACCTCTTCTCGCGCACGCATAACCACTCACGGCTT
CACCCCTTCCCCTCCCGACGCTCTTTGACAGCCATCCCCACTTGTCGGCT
ACATACATAGCGAGGCCATACCACAGCGAACCCGACGTACCTAGCTACAA
TCCCACACCACACACACCCAGACATCCACAAACTCACATCCACACACACC
TCTCTCCTAATCTCGCACACCTTCCACATCCTACACATCGCCACCCCTCC
TTACCCTCCCACCCTTCCTCACCGTTTCCTTTTTCCCACAGTCGACATTC
TACGGCGCGGGCGGCGCCGGTCAGGGCGGTGCCTGTATGCTTCCGCGAGG
GTTTAATGGCGTGGGTGTAACTGTGGCCATGAACCAGGCTCAGTATGAAG
GCTCCTGCGGCAAGTGTATCAAGGTACGTTTCTGTGGCGGTGAGGGCATG
GAAACTGCCGCGGCGTTTCTTGGGCTTTCATCTCGTGTCTCTCGTCGAGG
AACTTTCCCTCCATGTCTCCATCACGCCCTTAACCCTAACTAATTATTTC
CCTTCCATGCCTGTCTCTCTCGTCACTCCATTCTACCCCCCTTCCATAGC
TGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCATC
TTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCGA
CCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTGG
ACTGCGGTAAGTCACCCGCAAAAGATGGGGAGAGGGAAGGGGGTTGAGGG
ATGATGATAGATGTCGACCGTCGTGTGAACGTTGACTCCCTCGTCGCTCA
CCTTTTCCCATTTCTATCCTGGAACACGAACGAATAGGCATGGCTGCTTC
CGCCTGGTCTCAGCTACCCGGAGGCAGGCGTAACCTCCGTGGCGCGGACG
ATGCGTCTCCGGATGCGTCCAAGCCCTTGATGCTCGGCCCGGGCATGTAC
GTGATGCCCGACGGCATCAAGGACTTGGACACTGTCAAGGCCATGTTCCA
TGCAGGCAACGGGACCGCCGTCGCCGCCGCCCTAAGTGGAGGGAACTAAG
GAGAGGCAGGGAGAGCAGGGAACGCTGACGAGAGGGTCGTCCTTTCCCTT
ATTTTTGATTATTTGTGTGCGGTGTCCCGGCCTTGTTACGGTCGGGTGAT
TTTGAGTTAAAGAATTGGACGGCGATCGATAAAGTGTGAGTTAATGCAAG
TAAATTATCAATTGCGGGCAGATGAGGTCCTAGAGGTGGGAGGCGAGTGG
GCAGCTGCGGGCAGAGGTACTGTGATCAGTTGAGTGGTTCACCATGTGAG
GAACTGAGACGGAAAGAACGACCTTAATAAAAACCTGAAAAGAAAATGGG
TTGGTACAGTAGAGGTCGGCCACGGCCGAGTGACTGTGGTTACGGCTACA
TGTGAGTGAGAAGGAGTGAAGGAGAAATTGGGAGCTCGACACTACATGCC
CGGGCGCCTGAAAACAATTCAGAAAAACGGAAATGAAGACCTCAAAGAAA
AATGGTTCTTTCTAATAGAAAGGTCGCCCTGACTACGCATGCTCTGCGTG
TGTGAGAGACAGAGAGAGAGAGTCTGTGGATGTGATGTGGCTGACCTGTG
TGCTTCTAGACGGGGAAATTATAAAAGACAAAATATTAAAAAAAACGAGA
GAACCCAGAAGAGGAAAACGTGGCTCATTATGCAGGTCCTTTGGATGGAT
TGAACGTTGGTAGAGCTGTGTCGGTACGTGTGTGTGATAGAGAACGAGAA
AGACAATAGGAGAATAGATGGAGCGTCCAGGGATTGGGGCTGAGAGGCAC
GTCGACCGGGGGTCTTGTTGGTTGGTTGAGGTCAGAGAGAGAGAGAGGAA
CCATCGAAATGAAAAAAAAAGGGAACCGTGAAATACGAAA
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Coding sequence (CDS) from alignment at chr2:92322..95961+

>NO02G00260.1 ID=NO02G00260.1|Name=NO02G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr2:92322..95961+ (Nannochloropsis oceanica)
ATGTCTGGGTGTCCCTTAGTAGACACTACAGACGTTCTTTCGTTCCTGGC
TCACTTTCTGCACTATTTACCCGTGCACACACAGCCACCACCACCAACCA
CCACCCTCTCAACAACAATGATGAAGTCTATCGCTTTCCTCTTGGCTTTC
GCCTCCTCCGCTTCTGCTTTCAGTGGGCAGTCGACATTCTACGGCGCGGG
CGGCGCCGGTCAGGGCGGTGCCTGTATGCTTCCGCGAGGGTTTAATGGCG
TGGGTGTAACTGTGGCCATGAACCAGGCTCAGTATGAAGGCTCCTGCGGC
AAGTGTATCAAGCTGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGT
GATCGGGCCCATCTTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCT
TCGGCGATATCGACCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAG
TGGGACTTCGTGGACTGCGGCATGGCTGCTTCCGCCTGGTCTCAGCTACC
CGGAGGCAGGCGTAACCTCCGTGGCGCGGACGATGCGTCTCCGGATGCGT
CCAAGCCCTTGATGCTCGGCCCGGGCATGTACGTGATGCCCGACGGCATC
AAGGACTTGGACACTGTCAAGGCCATGTTCCATGCAGGCAACGGGACCGC
CGTCGCCGCCGCCCTAAGTGGAGGGAACTAA
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Synonyms
Publications