NO01G05940, NO01G05940 (gene) Nannochloropsis oceanica

Overview
NameNO01G05940
Unique NameNO01G05940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1622
Alignment locationchr1:1683581..1685202 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1683581..1685202 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO01G05940 vs. NCBI_GenBank
Match: EWM27842.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 374.0 bits (959), Expect = 6.100e-100
Identity = 248/446 (55.61%), Postives = 280/446 (62.78%), Query Frame = 0 
Query:    1 MIQAIEEGDVDRVRLFLLRYHRLSKPTVAVNALTRRPPSNFFHLALTSRQEEVALFLFRQKGPSSAMIEAKDAQGSTSLMLAVIHNLLDVVKAL-----------------------------PFSLLARTRQRRRSLTPLDLRAVSAHGHRATCYAAIHGHMDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKVAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTLR------LERASXXXXXXXXXXXXXXXXXXXXQSPLAPSMS---CSSMLSPSALPARSPSLLXXXXXXXXXXXXXXXXXXXXXXXXXGGGREEREGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLFQREVAGGCSSAENSPGRPGRGREGXXXXXXXXTSMKKVGKYLTLMQKKQRAVDAAMEELFDGEN 409
            M  AIEEG++DRV   L +Y RL  P+   N+  RRP  NFFH ALT RQE VAL L + +G SS MI+AKD QG TSLMLAVI+NLL VVKAL                                         RSLTPLDLRAVS  GHRATCYAA++GH+DIL+FLLTHMSGGDS  NFV C+QSQSAPCGHALLHHAV GNHYR IKWLVQK A VNV TKG A+E+G++KWTPLHCAIHAFL  +       E A                      SP   +++                     XXXXXXXXXXXXXXXXXXXXXXXXX          ALKIIRWL+EEGKADM ++D  GRTP D+F+GS L+QRE +G  +S E SPGRPGR R+G        TSMK+VGKYL LMQKKQRAVDAAM ELFDGEN
Sbjct:  222 MTSAIEEGNIDRVIHLLGQYRRLPTPSTTNNSPDRRPIPNFFHYALTLRQEGVALSLLQHEGSSSPMIDAKDPQGRTSLMLAVIYNLLGVVKALMLPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLTPLDLRAVSIQGHRATCYAALNGHIDILEFLLTHMSGGDSSSNFVTCIQSQSAPCGHALLHHAVQGNHYRTIKWLVQKGANVNVPTKGSAFEEGHKKWTPLHCAIHAFLEAKKEAAIIREEAGRAGPLGGRDRGPGNRGGGLFSSPPFKTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKIIRWLIEEGKADMIVKDVHGRTPYDIFIGSTLYQRENSGSYNSNEMSPGRPGRRRDG----GREITSMKRVGKYLVLMQKKQRAVDAAMGELFDGEN 663
The following BLAST results are available for this feature:
BLAST of NO01G05940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27842.16.100e-10055.61ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR008ncniR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05940.1NO01G05940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634548gene_11744Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05940.1NO01G05940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05940 ID=NO01G05940|Name=NO01G05940|organism=Nannochloropsis oceanica|type=gene|length=1622bp
ATGATCCAGGCCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCT
ATTGCGATACCATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTA
CCCGCCGTCCACCCTCCAACTTCTTCCACTTGGCTCTCACAAGCCGGCAG
GAGGAAGTGGCTCTTTTTCTCTTCCGACAGAAGGGGCCCTCCTCCGCCAT
GATAGAAGCGAAGGACGCCCAAGGCAGTACGAGCCTGATGCTCGCCGTCA
TTCACAATCTCCTCGACGTCGTCAAGGCCCTCgtccttcctccgtcctct
ctcccgtccccccctcctcctcctcctccacctccccctccttcaccccc
tccccttcaccctctttctcctccaagCCTTTCTCCCTCCTCGCCCGCAC
GCGACAACGCCGCCGCTCCCTCACCCCTCTCGACCTCCGGGCTGTCTCCG
CCCACGGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACATGGAC
ATCCTGGACTTCCTCCTCACGCATATGAGCGGCGGCGACAGTAAGGTCAA
CTTTGTCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGC
TACACCATGCAGTGCTTGgtaagtgtcctctcttctttcctccctccctc
catcatccccccccatttcactctctccattatcgaactcttgcgcgagt
cagtcggggattacgttttcacactcttggtgtcattctttcctcccctt
ccctccctccctctccctgcggaatcggaacaagatcgtcgaatgactca
ccgaaaagagagcaagtgccatccccactcaccctccctccgtccctcca
tgcctcccgtcctccagGCAATCACTACCGAATGATCAAGTGGCTGGTGC
AAAAGGTAGCGGGCGTCAACGTACTGACGAAGGGGGGAGCCTACGAGGAC
GGCAATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGAC
CCTCAGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAG
GCGGGGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCT
TCCATGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTC
TCCCTCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCT
CCCCCTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGGAGGTGGGAGG
GAGGAGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGA
AGGGAAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGG
ACCTCTTTTTGGGCAGCGGGCTCTTCCAGCGGGAGGTCGCTGGTGGGTGC
AGCAGCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGAGGGAGGGAGG
GCGGGAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACC
TGACCCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAG
CTCTTCGACGGGGAAAATGGAAAGTGGGCTAGGGAGAGGGGGCGGGGGGG
GAGGAGGGGGGAGAGCCAGTGA
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protein sequence of NO01G05940.1

>NO01G05940.1-protein ID=NO01G05940.1-protein|Name=NO01G05940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MIQAIEEGDVDRVRLFLLRYHRLSKPTVAVNALTRRPPSNFFHLALTSRQ
EEVALFLFRQKGPSSAMIEAKDAQGSTSLMLAVIHNLLDVVKALPFSLLA
RTRQRRRSLTPLDLRAVSAHGHRATCYAAIHGHMDILDFLLTHMSGGDSK
VNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKVAGVNVLTKGGAY
EDGNRKWTPLHCAIHAFLTLRLERASQEGGGGGAGGGAGGRAAALFQSPL
APSMSCSSMLSPSALPARSPSLLASFSFSSPLSTTSPSTPTRTSTRAKGG
GREEREGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLFQREVAG
GCSSAENSPGRPGRGREGGREGGREATSMKKVGKYLTLMQKKQRAVDAAM
EELFDGENGKWARERGRGGRRGESQ*
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Synonyms
Publications