NO01G05940.1, NO01G05940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05940.1
Unique NameNO01G05940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr1:1683581..1685202 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1683581..1685202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05940.1 vs.
Match: EWM27842.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 469.5 bits (1207), Expect = 1.100e-128
Identity = 268/446 (60.09%), Postives = 312/446 (69.96%), Query Frame = 0 
Query:    1 MIQAIEEGDVDRVRLFLLRYHRLSKPTVAVNALTRRPPSNFFHLALTSRQEEVALFLFRQKGPSSAMIEAKDAQGSTSLMLAVIHNLLDVVKAL-----------------------------PFSLLARTRQRRRSLTPLDLRAVSAHGHRATCYAAIHGHMDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKVAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTLR------LERASQEGGGGGAGGGAGGRAAALFQSPLAPSMSCSSMLSPSALPARSPSLLASFSFSSPLSTTSPSTPTRTSTRAKGGGREE---REGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLFQREVAGGCSSAENSPGRPGRGREGGREGGREATSMKKVGKYLTLMQKKQRAVDAAMEELFDGEN 409
            M  AIEEG++DRV   L +Y RL  P+   N+  RRP  NFFH ALT RQE VAL L + +G SS MI+AKD QG TSLMLAVI+NLL VVKAL                                LL+RTRQRRRSLTPLDLRAVS  GHRATCYAA++GH+DIL+FLLTHMSGGDS  NFV C+QSQSAPCGHALLHHAV GNHYR IKWLVQK A VNV TKG A+E+G++KWTPLHCAIHAFL  +       E A + G  GG   G G R   LF SP   +++ ++ LSP+    +SPSL ASFSFSSP S +S S+P RT ++ +   REE   +E KALKIIRWL+EEGKADM ++D  GRTP D+F+GS L+QRE +G  +S E SPGRPGR     R+GGRE TSMK+VGKYL LMQKKQRAVDAAM ELFDGEN
Sbjct:  222 MTSAIEEGNIDRVIHLLGQYRRLPTPSTTNNSPDRRPIPNFFHYALTLRQEGVALSLLQHEGSSSPMIDAKDPQGRTSLMLAVIYNLLGVVKALMLPPSTLATASSSPSSSNLSSSSASAPRSSLCLLSRTRQRRRSLTPLDLRAVSIQGHRATCYAALNGHIDILEFLLTHMSGGDSSSNFVTCIQSQSAPCGHALLHHAVQGNHYRTIKWLVQKGANVNVPTKGSAFEEGHKKWTPLHCAIHAFLEAKKEAAIIREEAGRAGPLGGRDRGPGNRGGGLFSSPPFKTLTPTATLSPAGHLLQSPSLRASFSFSSPASPSSFSSPARTPSQRRENDREESEDKEKKALKIIRWLIEEGKADMIVKDVHGRTPYDIFIGSTLYQRENSGSYNSNEMSPGRPGR----RRDGGREITSMKRVGKYLVLMQKKQRAVDAAMGELFDGEN 663
The following BLAST results are available for this feature:
BLAST of NO01G05940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27842.11.100e-12860.09ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05940NO01G05940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05940.1NO01G05940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05940.1.cds1NO01G05940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05940.1.cds2NO01G05940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05940.1.cds3NO01G05940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05940.1 ID=NO01G05940.1|Name=NO01G05940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
ATGATCCAGGCCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCT
ATTGCGATACCATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTA
CCCGCCGTCCACCCTCCAACTTCTTCCACTTGGCTCTCACAAGCCGGCAG
GAGGAAGTGGCTCTTTTTCTCTTCCGACAGAAGGGGCCCTCCTCCGCCAT
GATAGAAGCGAAGGACGCCCAAGGCAGTACGAGCCTGATGCTCGCCGTCA
TTCACAATCTCCTCGACGTCGTCAAGGCCCTCCCTTTCTCCCTCCTCGCC
CGCACGCGACAACGCCGCCGCTCCCTCACCCCTCTCGACCTCCGGGCTGT
CTCCGCCCACGGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACA
TGGACATCCTGGACTTCCTCCTCACGCATATGAGCGGCGGCGACAGTAAG
GTCAACTTTGTCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGC
CTTGCTACACCATGCAGTGCTTGGCAATCACTACCGAATGATCAAGTGGC
TGGTGCAAAAGGTAGCGGGCGTCAACGTACTGACGAAGGGGGGAGCCTAC
GAGGACGGCAATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTT
TCTGACCCTCAGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGG
CCGGAGGCGGGGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTT
GCCCCTTCCATGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGC
GCGCTCTCCCTCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCA
CCACCTCCCCCTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGGAGGT
GGGAGGGAGGAGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGT
GGAGGAAGGGAAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCC
CGCTGGACCTCTTTTTGGGCAGCGGGCTCTTCCAGCGGGAGGTCGCTGGT
GGGTGCAGCAGCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGAGGGA
GGGAGGGCGGGAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGA
AGTACCTGACCCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATG
GAGGAGCTCTTCGACGGGGAAAATGGAAAGTGGGCTAGGGAGAGGGGGCG
GGGGGGGAGGAGGGGGGAGAGCCAGTGA
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protein sequence of NO01G05940.1

>NO01G05940.1-protein ID=NO01G05940.1-protein|Name=NO01G05940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MIQAIEEGDVDRVRLFLLRYHRLSKPTVAVNALTRRPPSNFFHLALTSRQ
EEVALFLFRQKGPSSAMIEAKDAQGSTSLMLAVIHNLLDVVKALPFSLLA
RTRQRRRSLTPLDLRAVSAHGHRATCYAAIHGHMDILDFLLTHMSGGDSK
VNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKVAGVNVLTKGGAY
EDGNRKWTPLHCAIHAFLTLRLERASQEGGGGGAGGGAGGRAAALFQSPL
APSMSCSSMLSPSALPARSPSLLASFSFSSPLSTTSPSTPTRTSTRAKGG
GREEREGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLFQREVAG
GCSSAENSPGRPGRGREGGREGGREATSMKKVGKYLTLMQKKQRAVDAAM
EELFDGENGKWARERGRGGRRGESQ*
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mRNA from alignment at chr1:1683581..1685202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05940.1 ID=NO01G05940.1|Name=NO01G05940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at chr1:1683581..1685202+ (Nannochloropsis oceanica)
ATGATCCAGGCCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCT
ATTGCGATACCATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTA
CCCGCCGTCCACCCTCCAACTTCTTCCACTTGGCTCTCACAAGCCGGCAG
GAGGAAGTGGCTCTTTTTCTCTTCCGACAGAAGGGGCCCTCCTCCGCCAT
GATAGAAGCGAAGGACGCCCAAGGCAGTACGAGCCTGATGCTCGCCGTCA
TTCACAATCTCCTCGACGTCGTCAAGGCCCTCGTCCTTCCTCCGTCCTCT
CTCCCGTCCCCCCCTCCTCCTCCTCCTCCACCTCCCCCTCCTTCACCCCC
TCCCCTTCACCCTCTTTCTCCTCCAAGCCTTTCTCCCTCCTCGCCCGCAC
GCGACAACGCCGCCGCTCCCTCACCCCTCTCGACCTCCGGGCTGTCTCCG
CCCACGGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACATGGAC
ATCCTGGACTTCCTCCTCACGCATATGAGCGGCGGCGACAGTAAGGTCAA
CTTTGTCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGC
TACACCATGCAGTGCTTGGTAAGTGTCCTCTCTTCTTTCCTCCCTCCCTC
CATCATCCCCCCCCATTTCACTCTCTCCATTATCGAACTCTTGCGCGAGT
CAGTCGGGGATTACGTTTTCACACTCTTGGTGTCATTCTTTCCTCCCCTT
CCCTCCCTCCCTCTCCCTGCGGAATCGGAACAAGATCGTCGAATGACTCA
CCGAAAAGAGAGCAAGTGCCATCCCCACTCACCCTCCCTCCGTCCCTCCA
TGCCTCCCGTCCTCCAGGCAATCACTACCGAATGATCAAGTGGCTGGTGC
AAAAGGTAGCGGGCGTCAACGTACTGACGAAGGGGGGAGCCTACGAGGAC
GGCAATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGAC
CCTCAGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAG
GCGGGGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCT
TCCATGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTC
TCCCTCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCT
CCCCCTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGGAGGTGGGAGG
GAGGAGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGA
AGGGAAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGG
ACCTCTTTTTGGGCAGCGGGCTCTTCCAGCGGGAGGTCGCTGGTGGGTGC
AGCAGCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGAGGGAGGGAGG
GCGGGAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACC
TGACCCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAG
CTCTTCGACGGGGAAAATGGAAAGTGGGCTAGGGAGAGGGGGCGGGGGGG
GAGGAGGGGGGAGAGCCAGTGA
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Coding sequence (CDS) from alignment at chr1:1683581..1685202+

>NO01G05940.1 ID=NO01G05940.1|Name=NO01G05940.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr1:1683581..1685202+ (Nannochloropsis oceanica)
ATGATCCAGGCCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCT
ATTGCGATACCATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTA
CCCGCCGTCCACCCTCCAACTTCTTCCACTTGGCTCTCACAAGCCGGCAG
GAGGAAGTGGCTCTTTTTCTCTTCCGACAGAAGGGGCCCTCCTCCGCCAT
GATAGAAGCGAAGGACGCCCAAGGCAGTACGAGCCTGATGCTCGCCGTCA
TTCACAATCTCCTCGACGTCGTCAAGGCCCTCCCTTTCTCCCTCCTCGCC
CGCACGCGACAACGCCGCCGCTCCCTCACCCCTCTCGACCTCCGGGCTGT
CTCCGCCCACGGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACA
TGGACATCCTGGACTTCCTCCTCACGCATATGAGCGGCGGCGACAGTAAG
GTCAACTTTGTCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGC
CTTGCTACACCATGCAGTGCTTGGCAATCACTACCGAATGATCAAGTGGC
TGGTGCAAAAGGTAGCGGGCGTCAACGTACTGACGAAGGGGGGAGCCTAC
GAGGACGGCAATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTT
TCTGACCCTCAGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGG
CCGGAGGCGGGGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTT
GCCCCTTCCATGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGC
GCGCTCTCCCTCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCA
CCACCTCCCCCTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGGAGGT
GGGAGGGAGGAGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGT
GGAGGAAGGGAAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCC
CGCTGGACCTCTTTTTGGGCAGCGGGCTCTTCCAGCGGGAGGTCGCTGGT
GGGTGCAGCAGCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGAGGGA
GGGAGGGCGGGAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGA
AGTACCTGACCCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATG
GAGGAGCTCTTCGACGGGGAAAATGGAAAGTGGGCTAGGGAGAGGGGGCG
GGGGGGGAGGAGGGGGGAGAGCCAGTGA
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Synonyms
Publications