NO01G05910, NO01G05910 (gene) Nannochloropsis oceanica

Overview
NameNO01G05910
Unique NameNO01G05910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3360
Alignment locationchr1:1669538..1672897 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1669538..1672897 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G05910 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.5 bits (410), Expect = 1.900e-36
Identity = 74/189 (39.15%), Postives = 120/189 (63.49%), Query Frame = 0 
Query:   94 VSEEGHTRLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVALKDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVLS-DPIARRFLDNPILAVQEAVDAASDYVKNAK 282
            ++ + H   L+  W DP + R L D  P     KPLR L  K+ LTP DG +AV   K+ M K+L +++++RDPE  A  ++ Y+  +DP+W SL+AR++ G+  + LE QQ++L+ E+G LIDL  +GF G+ PS++ +A ET ++ EP +W S+ S DPIAR++++ P   +++ +D  S+   N K
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLK 190
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BLAST of NO01G05910 vs. NCBI_GenBank
Match: EWM20107.1 (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 5.300e-31
Identity = 64/103 (62.14%), Postives = 87/103 (84.47%), Query Frame = 0 
Query:  174 IYKYATSEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVLSDPIARRFLDNPILAVQEAVDAASDY 277
            +Y YATS D KW+SLL R+E+GD T+ L+ QQFLLN+EIGDLIDL+A GFGG LP +++KAI + ++ EPL+W SVLSDP+A+R+L++P+LAV+EA+D A DY
Sbjct:    1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISSVREQEPLIWNSVLSDPVAKRYLEDPMLAVKEALDVAKDY 103
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BLAST of NO01G05910 vs. NCBI_GenBank
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 1.400e-23
Identity = 71/268 (26.49%), Postives = 125/268 (46.64%), Query Frame = 0 
Query:   23 GNMKTGIFNKIAETTRDLPVTTGGASPFGEQVGRFSLD----------GFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHTRLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKT----LTPSDGFEAVVALKDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVLSDPIARRFLDNPILAVQEAVDAASDY 277
            G  KTG+F +I+             +PF +++   + D           F +  E     ++      L   + G L N         + L  AW  P + R L+  +PLF   KP++ + + K+     +P DG +A    K  M + +  L ++RDPE FA K+  YA S+D     L A+   G+  +H E   F + +E+GD+IDL  LGF G  PS +       K+  P ++ ++++DP  ++++++P  AV+E  +   ++
Sbjct:   45 GAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNF 312
[Close]
BLAST of NO01G05910 vs. NCBI_GenBank
Match: EWM24616.1 (hypothetical protein Naga_103392g1 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-13
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0 
Query:   86 MGLLRNVFVSEEGHTRLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSD 143
            MGL+++VFV +  HTRLLQEAW DPEI R L+D+LP F VIKPLRAL+EKK L+P D
Sbjct:    1 MGLMQDVFVRDPEHTRLLQEAWADPEIFRYLVDELPFFSVIKPLRALREKKVLSPQD 57
The following BLAST results are available for this feature:
BLAST of NO01G05910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854650.11.900e-3639.15hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
EWM20107.15.300e-3162.14hypothetical protein Naga_101770g1 [Nannochloropsi... [more]
EWM24065.11.400e-2326.49hypothetical protein Naga_100063g14 [Nannochlorops... [more]
EWM24616.11.300e-1368.42hypothetical protein Naga_103392g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR008ncniR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05910.1NO01G05910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05910.2NO01G05910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614906gene_11740Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05910.1NO01G05910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05910.2NO01G05910.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05910 ID=NO01G05910|Name=NO01G05910|organism=Nannochloropsis oceanica|type=gene|length=3360bp
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTCAAAGAAAAAAT
ACAGTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAG
ACAGAGTATGTGGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGA
GTCACATTTAAGCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATAC
CGCGGATGGACGCCAATAAATACCTCTACATCGACCCATGCATATATTTG
TGCAGTATAATGTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCT
AACGACACATGACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTG
GACAGTAATCAATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGC
CGTTAGTATCCTCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAAT
TACTTGGCGAGTATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCA
TCATGTCTACAATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATA
GTTCAAGGACAGAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCT
TTATGATTGTTCTCATGACTGAATTTTATATATATGTCTTATACGTTTAT
CGAGAAGATTCATGTAATAATAATTATCGAGAAGATTCATGTGACAATAA
TGTCTAAAGATTCATGTAATTTGAAAATACTAAATTATGGACATATTTAA
TTCCAAATCATATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTA
AATTATGCACGGGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACC
ATAGATCTTTGCCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCA
ATTACAAGATTCAATAAGAACTCTCATATCAACGAGTGAGGATTCGATAC
TATAGGAAAGCAAGCTTGATTATAACTATTGAACAACAATACACATGCCC
CTGAAAGTATCTCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTG
ATCCATGACGAGTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTC
TGTTGTTGGTCATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATT
GCTTAAAATTGCTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTC
CCTGGCCCACTAATACATTATTATATGTAGTGGAGAAGATTCATGTAAAA
AATAGAGCATCTATATAGAATATTCACCTGAATAAAGATTCAATTTGGGT
CAAATATATCCGAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTC
GAAGTGCTTCGCCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATC
AATTAAAATCACTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTA
TATAAAGATGTGAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCC
ATCTCAATTTATCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCG
TACACAGTAAGCAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCT
TTCTGTCAAAAAATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTT
TTTCCACCGATGCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGC
ATGTGGTGGCCTTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTG
ACACAACTGACTTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTA
GGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACC
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATgtaagtgagatagtgtaaaaggag
tgagtataccaatataacgatcagcaggcacatggaaatacttggcgcaa
ttttcaaagcaaatcttcacgcatcacagGGATTCGAGGCTGTAGTGGCT
CTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGA
CCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACC
CAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCT
CATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAA
GTAATGAATGTAGTGGGCATACATATACATCTATCCAATGGCCATGTCAG
GATTTCATTGTGCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCG
ATACAATGATTCTAAGTCACTACACCCACATATAATCTATACCAGTTATC
GACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAA
AGCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCT
TATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTC
CAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAG
TGCCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATAC
ATACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGC
AGCTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCA
AAGACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATA
AACGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGC
AAGGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAA
AGTATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAA
CGTACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATA
TCCAGGCCGA
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protein sequence of NO01G05910.1

>NO01G05910.1-protein ID=NO01G05910.1-protein|Name=NO01G05910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTRQFSTALILVASVVLPTAVQGNMKTGIFNKIAETTRDLPVTTGGASPF
GEQVGRFSLDGFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHT
RLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVAL
KDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSH
LESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVL
SDPIARRFLDNPILAVQEAVDAASDYVKNAKASAQ*
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protein sequence of NO01G05910.2

>NO01G05910.2-protein ID=NO01G05910.2-protein|Name=NO01G05910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MTRQFSTALILVASVVLPTAVQGNMKTGIFNKIAETTRDLPVTTGGASPF
GEQVGRFSLDGFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHT
RLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVAL
KDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSH
LESQQFLLNEEIGDRK*
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Synonyms
Publications