NO01G05910.1, NO01G05910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05910.1
Unique NameNO01G05910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3108
Alignment locationchr1:1669538..1672897 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1669538..1672897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05910.1 vs.
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]; EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.5 bits (410), Expect = 1.900e-36
Identity = 74/189 (39.15%), Postives = 120/189 (63.49%), Query Frame = 0 
Query:   94 VSEEGHTRLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVALKDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVLS-DPIARRFLDNPILAVQEAVDAASDYVKNAK 282
            ++ + H   L+  W DP + R L D  P     KPLR L  K+ LTP DG +AV   K+ M K+L +++++RDPE  A  ++ Y+  +DP+W SL+AR++ G+  + LE QQ++L+ E+G LIDL  +GF G+ PS++ +A ET ++ EP +W S+ S DPIAR++++ P   +++ +D  S+   N K
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLK 190
The following BLAST results are available for this feature:
BLAST of NO01G05910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854650.11.900e-3639.15hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05910NO01G05910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05910.1NO01G05910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05910.1.cds1NO01G05910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05910.1.cds2NO01G05910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05910.1.cds3NO01G05910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05910.1 ID=NO01G05910.1|Name=NO01G05910.1|organism=Nannochloropsis oceanica|type=mRNA|length=3108bp
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTCAAAGAAAAAAT
ACAGTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAG
ACAGAGTATGTGGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGA
GTCACATTTAAGCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATAC
CGCGGATGGACGCCAATAAATACCTCTACATCGACCCATGCATATATTTG
TGCAGTATAATGTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCT
AACGACACATGACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTG
GACAGTAATCAATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGC
CGTTAGTATCCTCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAAT
TACTTGGCGAGTATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCA
TCATGTCTACAATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATA
GTTCAAGGACAGAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCT
TTATGATTGTTCTCATGACTGAATTTTATATATATGTCTTATACGTTTAT
CGAGAAGATTCATGTAATAATAATTATCGAGAAGATTCATGTGACAATAA
TGTCTAAAGATTCATGTAATTTGAAAATACTAAATTATGGACATATTTAA
TTCCAAATCATATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTA
AATTATGCACGGGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACC
ATAGATCTTTGCCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCA
ATTACAAGATTCAATAAGAACTCTCATATCAACGAGTGAGGATTCGATAC
TATAGGAAAGCAAGCTTGATTATAACTATTGAACAACAATACACATGCCC
CTGAAAGTATCTCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTG
ATCCATGACGAGTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTC
TGTTGTTGGTCATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATT
GCTTAAAATTGCTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTC
CCTGGCCCACTAATACATTATTATATGTAGTGGAGAAGATTCATGTAAAA
AATAGAGCATCTATATAGAATATTCACCTGAATAAAGATTCAATTTGGGT
CAAATATATCCGAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTC
GAAGTGCTTCGCCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATC
AATTAAAATCACTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTA
TATAAAGATGTGAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCC
ATCTCAATTTATCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCG
TACACAGTAAGCAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCT
TTCTGTCAAAAAATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTT
TTTCCACCGATGCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGC
ATGTGGTGGCCTTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTG
ACACAACTGACTTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTA
GGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACC
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCTC
AAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCC
AGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAA
AATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCAT
CTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCTTATCGA
CCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAG
CGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTA
TCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCA
AGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTG
CCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATACAT
ACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGCAG
CTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCAAA
GACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATAAA
CGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGCAA
GGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAAAG
TATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAACG
TACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATATC
CAGGCCGA
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protein sequence of NO01G05910.1

>NO01G05910.1-protein ID=NO01G05910.1-protein|Name=NO01G05910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTRQFSTALILVASVVLPTAVQGNMKTGIFNKIAETTRDLPVTTGGASPF
GEQVGRFSLDGFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHT
RLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVAL
KDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSH
LESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVL
SDPIARRFLDNPILAVQEAVDAASDYVKNAKASAQ*
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mRNA from alignment at chr1:1669538..1672897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05910.1 ID=NO01G05910.1|Name=NO01G05910.1|organism=Nannochloropsis oceanica|type=mRNA|length=3360bp|location=Sequence derived from alignment at chr1:1669538..1672897+ (Nannochloropsis oceanica)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTCAAAGAAAAAAT
ACAGTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAG
ACAGAGTATGTGGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGA
GTCACATTTAAGCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATAC
CGCGGATGGACGCCAATAAATACCTCTACATCGACCCATGCATATATTTG
TGCAGTATAATGTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCT
AACGACACATGACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTG
GACAGTAATCAATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGC
CGTTAGTATCCTCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAAT
TACTTGGCGAGTATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCA
TCATGTCTACAATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATA
GTTCAAGGACAGAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCT
TTATGATTGTTCTCATGACTGAATTTTATATATATGTCTTATACGTTTAT
CGAGAAGATTCATGTAATAATAATTATCGAGAAGATTCATGTGACAATAA
TGTCTAAAGATTCATGTAATTTGAAAATACTAAATTATGGACATATTTAA
TTCCAAATCATATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTA
AATTATGCACGGGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACC
ATAGATCTTTGCCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCA
ATTACAAGATTCAATAAGAACTCTCATATCAACGAGTGAGGATTCGATAC
TATAGGAAAGCAAGCTTGATTATAACTATTGAACAACAATACACATGCCC
CTGAAAGTATCTCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTG
ATCCATGACGAGTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTC
TGTTGTTGGTCATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATT
GCTTAAAATTGCTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTC
CCTGGCCCACTAATACATTATTATATGTAGTGGAGAAGATTCATGTAAAA
AATAGAGCATCTATATAGAATATTCACCTGAATAAAGATTCAATTTGGGT
CAAATATATCCGAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTC
GAAGTGCTTCGCCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATC
AATTAAAATCACTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTA
TATAAAGATGTGAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCC
ATCTCAATTTATCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCG
TACACAGTAAGCAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCT
TTCTGTCAAAAAATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTT
TTTCCACCGATGCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGC
ATGTGGTGGCCTTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTG
ACACAACTGACTTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTA
GGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACC
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGTAAGTGAGATAGTGTAAAAGGAG
TGAGTATACCAATATAACGATCAGCAGGCACATGGAAATACTTGGCGCAA
TTTTCAAAGCAAATCTTCACGCATCACAGGGATTCGAGGCTGTAGTGGCT
CTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGA
CCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACC
CAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCT
CATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAA
GTAATGAATGTAGTGGGCATACATATACATCTATCCAATGGCCATGTCAG
GATTTCATTGTGCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCG
ATACAATGATTCTAAGTCACTACACCCACATATAATCTATACCAGTTATC
GACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAA
AGCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCT
TATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTC
CAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAG
TGCCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATAC
ATACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGC
AGCTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCA
AAGACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATA
AACGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGC
AAGGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAA
AGTATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAA
CGTACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATA
TCCAGGCCGA
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Coding sequence (CDS) from alignment at chr1:1669538..1672897+

>NO01G05910.1 ID=NO01G05910.1|Name=NO01G05910.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr1:1669538..1672897+ (Nannochloropsis oceanica)
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCTC
AAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCC
AGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAA
AATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCAT
CTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCTTATCGA
CCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAG
CGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTA
TCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCA
AGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTG
CCCAGTAG
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Synonyms
Publications