NO01G05780, NO01G05780 (gene) Nannochloropsis oceanica

Overview
NameNO01G05780
Unique NameNO01G05780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2285
Alignment locationchr1:1615572..1617856 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1615572..1617856 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05780.1NO01G05780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05780.1NO01G05780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05780 ID=NO01G05780|Name=NO01G05780|organism=Nannochloropsis oceanica|type=gene|length=2285bp
ACGGTATGAAGCGAAAAGTACACGGTTGTTTTCCCTTGATTTCTGCAGTT
CCTGGGGTCGGGGTAGAGCCACTGAAGAAAGCAGTGAAGAAGAGAAGTGG
TTAATGGAACAAAGGTCTTGTTTTCAAGGCAAACTTCATGCGCGCTTGTT
GTTGTTGCATTTTTGCCTTCTCCTTTTCTTCTGTTGCTCGTACTTGTACG
ATCCGTCGCGTCTGCATGTTTTTGACTTCCCCTTTGAGGCGTCCCGACGG
TATCGTTTAATAGGCGCGGCATAAATTAAGGGTGATACTTAGGCTGTAGC
TTGGTCTGTTGGGGCTTGTTAGACACGCAACACGTGAAAGCGATGCGTGC
TGGAGGCCTGGGGGGGTAAAGGGTACGAGGGAGAAGAAAGACGTTCCGAT
GATGAAGCTTGCCTCGTGCACCAGATCTCCGGAGTGTTCCCGTTGTCGGC
CTCCAATGGCACTGCCTCCACTCATTGCTACTCACTAGATCACGCCCCTC
TGATCCAGGTTGCCCGTCATCATGCGCCTCGGTGGCTCGCCCGGCTGCAT
TAAGCGTCCTTCTTCCTCTTCTACCCCATCAGCAGCAGCAGCCACCTCAT
CCTCCATCCTTTTCCTCCCCGACGACTGGATCTCCGCTTGCCTTGCCTTT
CTCTCTCCTTCCAGCCTCGTACTGCTGTGCGCCTGTTGCGACAGCACGGC
TGAGCATTCCCATGGCTGGGTGCGCATGGCAAGGGACGAAAAACAGTGGC
GCGCCATTATTCTTGCCATCTGGCCTTCCTGGGCACCGCTGCTCCAGCGG
ATCGAGGAGGAAAGAAAGCAGGAACGGGAGAGTCAGCAGCAGAAAATAAA
GGAGCGGCAGCAGCGTTGGCAGGCTCTCAAGTTGCGCTTCTGGCGACTTT
TTGCGGCACGCATGCGTAAGGTGTCCTTGCCCCTCACAGCGGACGACGCA
CAAGAGGACGAGGACGAAGACGAAGAAGGGGGGGAGGGAAAGAGTGAGTC
CTCCTCATCGGCGCCTGTCTTCATTCCTTCCGACTGTGAGGCATCCAACC
CCCTTCCTCCTCCCCCGTCTCCTCCTCCTTCCCAGTTGGCCGCCTCGGAC
TTGTATATCCACTTTGAAGTACGGGAACAGGAGGGGTGGTGGCTCCCCGA
GAGGGAGGATTTAAGCCCTTCACCTGTCCTCTTCTCGGCCCTCTTTTCTC
TGGCAGACCCCATGGCGGTAAATTGTTCGATTTATGATTCTTTGCACTAT
GTGCCCGCGACGCTGCCGGGGGCAGTCATGGAGGGAGTAAAAGGGGGAGG
AGGAGGAGGAGAAGGAGGAGGAGAAGGAGGGAGAGGCAGGACGGGGGGGG
CACTGGCAATGCTTTTAGGTGACAGCTTGGAGGACCCTCATTTCTCCTTG
GTCGTTGACTCGGCGGCTATTCACTTGCCGACCGGGAGAGTGGTGCGGCT
GCATGAgtatgtatggagggcgggcgggagggatggaattgcagggttgc
gcacccacggctggcttcttcttcttcttctctctgcattctcgcattca
ttctcattcttccctggacgcacgctcgtacatgcacagGCAAAGCCGGC
TGATGTTCGTGCACAGCTACTCACTGGAAGGAGAGGAGGAGGAGCTGGGG
CTGAAGGAGGAGGAAGGGGAGGGAGGGAACACATCATCTTTCTTCCGGAT
CATTTTGGACGATCAATCTCTGGGGCCTTGCGCAAAGCACTACCGATTTG
AGGTTTCCTTCTCGCCCTCCATCGTTCTTCCTTGCCAGCCAAAATCACAG
CAGGAGAGAGGGAAGGAGGGAGGGAAAGGGAAAGATGAGGAGGAGCCGCC
GCCGCCATGGTTATGTAAAGCACCCCTAGAGCTTCGGTTTTACGATCAGC
GCATAGAAGAGTATCTGGACGAGGAGGTGCCGTTCACTGGATGGAATCGT
CGACTTGTAGGGGGGGAATACTGTGAGTCCTTTTCCGACATGACGCGGCA
TAAGTTGCTTGTGAGGTTTTTCCTGCGTTTCCTCATTAATCGCACGGGCG
CATGGAGTCGCCGCTGAAATAAAGGAAGAGGGAGAAGCTTAAAGGTAAAA
ATGACAGAGTGTGCTTGTGAAGGGTAGAAAGCTCCAATTTCTTGTTTGGG
GTTGATACTTGAACCTCCTCCTGCTTAAAGCATCCACTTGACGTTCCTGA
AAGTCTGAGGTCCCTCCTTCTCGGAAAGAAAGGCCTGCACTTTTGCGGAT
GAATATAGCTCGTAGTGCGCATGCATGAACCATGC
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protein sequence of NO01G05780.1

>NO01G05780.1-protein ID=NO01G05780.1-protein|Name=NO01G05780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MRLGGSPGCIKRPSSSSTPSAAAATSSSILFLPDDWISACLAFLSPSSLV
LLCACCDSTAEHSHGWVRMARDEKQWRAIILAIWPSWAPLLQRIEEERKQ
ERESQQQKIKERQQRWQALKLRFWRLFAARMRKVSLPLTADDAQEDEDED
EEGGEGKSESSSSAPVFIPSDCEASNPLPPPPSPPPSQLAASDLYIHFEV
REQEGWWLPEREDLSPSPVLFSALFSLADPMAVNCSIYDSLHYVPATLPG
AVMEGVKGGGGGGEGGGEGGRGRTGGALAMLLGDSLEDPHFSLVVDSAAI
HLPTGRVVRLHEQSRLMFVHSYSLEGEEEELGLKEEEGEGGNTSSFFRII
LDDQSLGPCAKHYRFEVSFSPSIVLPCQPKSQQERGKEGGKGKDEEEPPP
PWLCKAPLELRFYDQRIEEYLDEEVPFTGWNRRLVGGEYCESFSDMTRHK
LLVRFFLRFLINRTGAWSRR*
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Synonyms
Publications