NO01G05780.1, NO01G05780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05780.1
Unique NameNO01G05780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2152
Alignment locationchr1:1615572..1617856 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1615572..1617856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05780NO01G05780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05780.1NO01G05780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05780.1.cds1NO01G05780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05780.1.cds2NO01G05780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05780.1 ID=NO01G05780.1|Name=NO01G05780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp
ACGGTATGAAGCGAAAAGTACACGGTTGTTTTCCCTTGATTTCTGCAGTT
CCTGGGGTCGGGGTAGAGCCACTGAAGAAAGCAGTGAAGAAGAGAAGTGG
TTAATGGAACAAAGGTCTTGTTTTCAAGGCAAACTTCATGCGCGCTTGTT
GTTGTTGCATTTTTGCCTTCTCCTTTTCTTCTGTTGCTCGTACTTGTACG
ATCCGTCGCGTCTGCATGTTTTTGACTTCCCCTTTGAGGCGTCCCGACGG
TATCGTTTAATAGGCGCGGCATAAATTAAGGGTGATACTTAGGCTGTAGC
TTGGTCTGTTGGGGCTTGTTAGACACGCAACACGTGAAAGCGATGCGTGC
TGGAGGCCTGGGGGGGTAAAGGGTACGAGGGAGAAGAAAGACGTTCCGAT
GATGAAGCTTGCCTCGTGCACCAGATCTCCGGAGTGTTCCCGTTGTCGGC
CTCCAATGGCACTGCCTCCACTCATTGCTACTCACTAGATCACGCCCCTC
TGATCCAGGTTGCCCGTCATCATGCGCCTCGGTGGCTCGCCCGGCTGCAT
TAAGCGTCCTTCTTCCTCTTCTACCCCATCAGCAGCAGCAGCCACCTCAT
CCTCCATCCTTTTCCTCCCCGACGACTGGATCTCCGCTTGCCTTGCCTTT
CTCTCTCCTTCCAGCCTCGTACTGCTGTGCGCCTGTTGCGACAGCACGGC
TGAGCATTCCCATGGCTGGGTGCGCATGGCAAGGGACGAAAAACAGTGGC
GCGCCATTATTCTTGCCATCTGGCCTTCCTGGGCACCGCTGCTCCAGCGG
ATCGAGGAGGAAAGAAAGCAGGAACGGGAGAGTCAGCAGCAGAAAATAAA
GGAGCGGCAGCAGCGTTGGCAGGCTCTCAAGTTGCGCTTCTGGCGACTTT
TTGCGGCACGCATGCGTAAGGTGTCCTTGCCCCTCACAGCGGACGACGCA
CAAGAGGACGAGGACGAAGACGAAGAAGGGGGGGAGGGAAAGAGTGAGTC
CTCCTCATCGGCGCCTGTCTTCATTCCTTCCGACTGTGAGGCATCCAACC
CCCTTCCTCCTCCCCCGTCTCCTCCTCCTTCCCAGTTGGCCGCCTCGGAC
TTGTATATCCACTTTGAAGTACGGGAACAGGAGGGGTGGTGGCTCCCCGA
GAGGGAGGATTTAAGCCCTTCACCTGTCCTCTTCTCGGCCCTCTTTTCTC
TGGCAGACCCCATGGCGGTAAATTGTTCGATTTATGATTCTTTGCACTAT
GTGCCCGCGACGCTGCCGGGGGCAGTCATGGAGGGAGTAAAAGGGGGAGG
AGGAGGAGGAGAAGGAGGAGGAGAAGGAGGGAGAGGCAGGACGGGGGGGG
CACTGGCAATGCTTTTAGGTGACAGCTTGGAGGACCCTCATTTCTCCTTG
GTCGTTGACTCGGCGGCTATTCACTTGCCGACCGGGAGAGTGGTGCGGCT
GCATGAGCAAAGCCGGCTGATGTTCGTGCACAGCTACTCACTGGAAGGAG
AGGAGGAGGAGCTGGGGCTGAAGGAGGAGGAAGGGGAGGGAGGGAACACA
TCATCTTTCTTCCGGATCATTTTGGACGATCAATCTCTGGGGCCTTGCGC
AAAGCACTACCGATTTGAGGTTTCCTTCTCGCCCTCCATCGTTCTTCCTT
GCCAGCCAAAATCACAGCAGGAGAGAGGGAAGGAGGGAGGGAAAGGGAAA
GATGAGGAGGAGCCGCCGCCGCCATGGTTATGTAAAGCACCCCTAGAGCT
TCGGTTTTACGATCAGCGCATAGAAGAGTATCTGGACGAGGAGGTGCCGT
TCACTGGATGGAATCGTCGACTTGTAGGGGGGGAATACTGTGAGTCCTTT
TCCGACATGACGCGGCATAAGTTGCTTGTGAGGTTTTTCCTGCGTTTCCT
CATTAATCGCACGGGCGCATGGAGTCGCCGCTGAAATAAAGGAAGAGGGA
GAAGCTTAAAGGTAAAAATGACAGAGTGTGCTTGTGAAGGGTAGAAAGCT
CCAATTTCTTGTTTGGGGTTGATACTTGAACCTCCTCCTGCTTAAAGCAT
CCACTTGACGTTCCTGAAAGTCTGAGGTCCCTCCTTCTCGGAAAGAAAGG
CCTGCACTTTTGCGGATGAATATAGCTCGTAGTGCGCATGCATGAACCAT
GC
back to top

protein sequence of NO01G05780.1

>NO01G05780.1-protein ID=NO01G05780.1-protein|Name=NO01G05780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MRLGGSPGCIKRPSSSSTPSAAAATSSSILFLPDDWISACLAFLSPSSLV
LLCACCDSTAEHSHGWVRMARDEKQWRAIILAIWPSWAPLLQRIEEERKQ
ERESQQQKIKERQQRWQALKLRFWRLFAARMRKVSLPLTADDAQEDEDED
EEGGEGKSESSSSAPVFIPSDCEASNPLPPPPSPPPSQLAASDLYIHFEV
REQEGWWLPEREDLSPSPVLFSALFSLADPMAVNCSIYDSLHYVPATLPG
AVMEGVKGGGGGGEGGGEGGRGRTGGALAMLLGDSLEDPHFSLVVDSAAI
HLPTGRVVRLHEQSRLMFVHSYSLEGEEEELGLKEEEGEGGNTSSFFRII
LDDQSLGPCAKHYRFEVSFSPSIVLPCQPKSQQERGKEGGKGKDEEEPPP
PWLCKAPLELRFYDQRIEEYLDEEVPFTGWNRRLVGGEYCESFSDMTRHK
LLVRFFLRFLINRTGAWSRR*
back to top

mRNA from alignment at chr1:1615572..1617856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05780.1 ID=NO01G05780.1|Name=NO01G05780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr1:1615572..1617856+ (Nannochloropsis oceanica)
ACGGTATGAAGCGAAAAGTACACGGTTGTTTTCCCTTGATTTCTGCAGTT
CCTGGGGTCGGGGTAGAGCCACTGAAGAAAGCAGTGAAGAAGAGAAGTGG
TTAATGGAACAAAGGTCTTGTTTTCAAGGCAAACTTCATGCGCGCTTGTT
GTTGTTGCATTTTTGCCTTCTCCTTTTCTTCTGTTGCTCGTACTTGTACG
ATCCGTCGCGTCTGCATGTTTTTGACTTCCCCTTTGAGGCGTCCCGACGG
TATCGTTTAATAGGCGCGGCATAAATTAAGGGTGATACTTAGGCTGTAGC
TTGGTCTGTTGGGGCTTGTTAGACACGCAACACGTGAAAGCGATGCGTGC
TGGAGGCCTGGGGGGGTAAAGGGTACGAGGGAGAAGAAAGACGTTCCGAT
GATGAAGCTTGCCTCGTGCACCAGATCTCCGGAGTGTTCCCGTTGTCGGC
CTCCAATGGCACTGCCTCCACTCATTGCTACTCACTAGATCACGCCCCTC
TGATCCAGGTTGCCCGTCATCATGCGCCTCGGTGGCTCGCCCGGCTGCAT
TAAGCGTCCTTCTTCCTCTTCTACCCCATCAGCAGCAGCAGCCACCTCAT
CCTCCATCCTTTTCCTCCCCGACGACTGGATCTCCGCTTGCCTTGCCTTT
CTCTCTCCTTCCAGCCTCGTACTGCTGTGCGCCTGTTGCGACAGCACGGC
TGAGCATTCCCATGGCTGGGTGCGCATGGCAAGGGACGAAAAACAGTGGC
GCGCCATTATTCTTGCCATCTGGCCTTCCTGGGCACCGCTGCTCCAGCGG
ATCGAGGAGGAAAGAAAGCAGGAACGGGAGAGTCAGCAGCAGAAAATAAA
GGAGCGGCAGCAGCGTTGGCAGGCTCTCAAGTTGCGCTTCTGGCGACTTT
TTGCGGCACGCATGCGTAAGGTGTCCTTGCCCCTCACAGCGGACGACGCA
CAAGAGGACGAGGACGAAGACGAAGAAGGGGGGGAGGGAAAGAGTGAGTC
CTCCTCATCGGCGCCTGTCTTCATTCCTTCCGACTGTGAGGCATCCAACC
CCCTTCCTCCTCCCCCGTCTCCTCCTCCTTCCCAGTTGGCCGCCTCGGAC
TTGTATATCCACTTTGAAGTACGGGAACAGGAGGGGTGGTGGCTCCCCGA
GAGGGAGGATTTAAGCCCTTCACCTGTCCTCTTCTCGGCCCTCTTTTCTC
TGGCAGACCCCATGGCGGTAAATTGTTCGATTTATGATTCTTTGCACTAT
GTGCCCGCGACGCTGCCGGGGGCAGTCATGGAGGGAGTAAAAGGGGGAGG
AGGAGGAGGAGAAGGAGGAGGAGAAGGAGGGAGAGGCAGGACGGGGGGGG
CACTGGCAATGCTTTTAGGTGACAGCTTGGAGGACCCTCATTTCTCCTTG
GTCGTTGACTCGGCGGCTATTCACTTGCCGACCGGGAGAGTGGTGCGGCT
GCATGAGTATGTATGGAGGGCGGGCGGGAGGGATGGAATTGCAGGGTTGC
GCACCCACGGCTGGCTTCTTCTTCTTCTTCTCTCTGCATTCTCGCATTCA
TTCTCATTCTTCCCTGGACGCACGCTCGTACATGCACAGGCAAAGCCGGC
TGATGTTCGTGCACAGCTACTCACTGGAAGGAGAGGAGGAGGAGCTGGGG
CTGAAGGAGGAGGAAGGGGAGGGAGGGAACACATCATCTTTCTTCCGGAT
CATTTTGGACGATCAATCTCTGGGGCCTTGCGCAAAGCACTACCGATTTG
AGGTTTCCTTCTCGCCCTCCATCGTTCTTCCTTGCCAGCCAAAATCACAG
CAGGAGAGAGGGAAGGAGGGAGGGAAAGGGAAAGATGAGGAGGAGCCGCC
GCCGCCATGGTTATGTAAAGCACCCCTAGAGCTTCGGTTTTACGATCAGC
GCATAGAAGAGTATCTGGACGAGGAGGTGCCGTTCACTGGATGGAATCGT
CGACTTGTAGGGGGGGAATACTGTGAGTCCTTTTCCGACATGACGCGGCA
TAAGTTGCTTGTGAGGTTTTTCCTGCGTTTCCTCATTAATCGCACGGGCG
CATGGAGTCGCCGCTGAAATAAAGGAAGAGGGAGAAGCTTAAAGGTAAAA
ATGACAGAGTGTGCTTGTGAAGGGTAGAAAGCTCCAATTTCTTGTTTGGG
GTTGATACTTGAACCTCCTCCTGCTTAAAGCATCCACTTGACGTTCCTGA
AAGTCTGAGGTCCCTCCTTCTCGGAAAGAAAGGCCTGCACTTTTGCGGAT
GAATATAGCTCGTAGTGCGCATGCATGAACCATGC
back to top

Coding sequence (CDS) from alignment at chr1:1615572..1617856+

>NO01G05780.1 ID=NO01G05780.1|Name=NO01G05780.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr1:1615572..1617856+ (Nannochloropsis oceanica)
ATGCGCCTCGGTGGCTCGCCCGGCTGCATTAAGCGTCCTTCTTCCTCTTC
TACCCCATCAGCAGCAGCAGCCACCTCATCCTCCATCCTTTTCCTCCCCG
ACGACTGGATCTCCGCTTGCCTTGCCTTTCTCTCTCCTTCCAGCCTCGTA
CTGCTGTGCGCCTGTTGCGACAGCACGGCTGAGCATTCCCATGGCTGGGT
GCGCATGGCAAGGGACGAAAAACAGTGGCGCGCCATTATTCTTGCCATCT
GGCCTTCCTGGGCACCGCTGCTCCAGCGGATCGAGGAGGAAAGAAAGCAG
GAACGGGAGAGTCAGCAGCAGAAAATAAAGGAGCGGCAGCAGCGTTGGCA
GGCTCTCAAGTTGCGCTTCTGGCGACTTTTTGCGGCACGCATGCGTAAGG
TGTCCTTGCCCCTCACAGCGGACGACGCACAAGAGGACGAGGACGAAGAC
GAAGAAGGGGGGGAGGGAAAGAGTGAGTCCTCCTCATCGGCGCCTGTCTT
CATTCCTTCCGACTGTGAGGCATCCAACCCCCTTCCTCCTCCCCCGTCTC
CTCCTCCTTCCCAGTTGGCCGCCTCGGACTTGTATATCCACTTTGAAGTA
CGGGAACAGGAGGGGTGGTGGCTCCCCGAGAGGGAGGATTTAAGCCCTTC
ACCTGTCCTCTTCTCGGCCCTCTTTTCTCTGGCAGACCCCATGGCGGTAA
ATTGTTCGATTTATGATTCTTTGCACTATGTGCCCGCGACGCTGCCGGGG
GCAGTCATGGAGGGAGTAAAAGGGGGAGGAGGAGGAGGAGAAGGAGGAGG
AGAAGGAGGGAGAGGCAGGACGGGGGGGGCACTGGCAATGCTTTTAGGTG
ACAGCTTGGAGGACCCTCATTTCTCCTTGGTCGTTGACTCGGCGGCTATT
CACTTGCCGACCGGGAGAGTGGTGCGGCTGCATGAGCAAAGCCGGCTGAT
GTTCGTGCACAGCTACTCACTGGAAGGAGAGGAGGAGGAGCTGGGGCTGA
AGGAGGAGGAAGGGGAGGGAGGGAACACATCATCTTTCTTCCGGATCATT
TTGGACGATCAATCTCTGGGGCCTTGCGCAAAGCACTACCGATTTGAGGT
TTCCTTCTCGCCCTCCATCGTTCTTCCTTGCCAGCCAAAATCACAGCAGG
AGAGAGGGAAGGAGGGAGGGAAAGGGAAAGATGAGGAGGAGCCGCCGCCG
CCATGGTTATGTAAAGCACCCCTAGAGCTTCGGTTTTACGATCAGCGCAT
AGAAGAGTATCTGGACGAGGAGGTGCCGTTCACTGGATGGAATCGTCGAC
TTGTAGGGGGGGAATACTGTGAGTCCTTTTCCGACATGACGCGGCATAAG
TTGCTTGTGAGGTTTTTCCTGCGTTTCCTCATTAATCGCACGGGCGCATG
GAGTCGCCGCTGA
back to top
Synonyms
Publications