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Properties
| Property Name | Value |
|---|
| Description | Pentatricopeptide repeat (PPR-like) superfamily protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr1 | genome | chr1:1564451..1572557 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
Homology
BLAST of NO01G05640 vs. NCBI_GenBank
Match: EWM22778.1 (hypothetical protein Naga_101581g2 [Nannochloropsis gaditana]) HSP 1 Score: 77.0 bits (188), Expect = 4.600e-10 Identity = 65/115 (56.52%), Postives = 73/115 (63.48%), Query Frame = 0
Query: 49 LIIMSPLFLFFILLSLPARATAFFLPLSPSSSLPSSSWHXXXXXXXXXXXXXXXXXXXXXXLLATPPVVLTEEEAERSSDLLAELDELAGRGRYQEALALLKSGGSTVGAVHYHK 164
+++ + L F +LL P +AF L P SLPS XXXXXXXXXX L A PPVVLTE E ERSSDLLAELDELAG G+YQEALAL+ SGG VG HYHK
Sbjct: 48 MLLCAWLSFFSLLLHQPLPTSAF---LHPFPSLPS----RPXXXXXXXXXXCLSPFAPFPTLGAIPPVVLTEGETERSSDLLAELDELAGEGKYQEALALVGSGGHVVGPPHYHK 155
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05640 ID=NO01G05640|Name=NO01G05640|organism=Nannochloropsis oceanica|type=gene|length=8107bp
GCTGCTGCTGCTGCTGCTGCTGCTCCAAGTGATGTTGCTGGTACCGTGAA
TACTGAAGTCGCTGCTGATCCTCGCACTGCTGTTGCTGTTGCTGCTGCAT
CAGGAGGTGGTGGTTGTGCTGCGGCTGCTGCTGGTAGTGTTGATGTCGGT
GATGCTCCTCATCCTGCCGCTGCCCATAGTGGTACTGCTGCTGCGAGTTA
TGTGGAGGGAAGATAAAAGAAGCCGGCGGCAGGTCGTGCCCGTGACTCGC
TATCCTCCGCTCATCCTCTCCCTCCCCCTCCTCCTCCCTCTTCGAGTCCG
TCGCCATCCGCACATCCCCTGACCCCGCCTGAAACCGCATCCGCTTCTTG
GTAACCGGAGCCCGACTCACGCGCACCACGTTCCCATGCACGTCTTCCTC
CGTGATTAAATGGCCTTTCCGGCGTCTGACATGCGTTGAGCTTGTGGAGT
TGGTGGTTTGGTTCGCCCCTCCATCGCCACCACCCGTCTCCTCTCCTTCC
ACCGCATGCACGATATTCCCCAGCGAGGTCTTATACAGAGTCCGGGGGGC
CTCCACAGCCATGTTGCTTGCTGTGGTGCTGGCACCGGTGGCGTGGGCGG
AGAATGAGGAGGAAGAGGAATTTGTTGTAGGAGTGGCAGGACTTCTTCCG
CCAGGGGACGAGACAGGCATCAATCTCCACGCTTACCCAAACTGGCCCCT
GCCCTTGCACCTGGCTGCCTCACTGGCTCTGGAGGGCCTCGCCCCTGTTG
TTTGATATGTGTTTTGTGGAAAAATTGATGCATGTGTGCATGCACGCTGT
TCGCGCTTGGCCCAAGGCCTTGACGTTCGAACTCTGGGCACGCCTTCGCG
CAACCCAGTTGATACCCGAGACTACCTCGTATCTCCGTGCTTGGACATGT
CTCTCCACTTCCACACACAAGCTCACACAGCGCCTTTTGTTTCACACACA
CCACACAGGCAGTACGACTACTTCGATGTGGCGTTTTCAGGGGCGGTGAC
TGTGCTGTTGCGTGAGGGAAAGAGACTAGAGTAGAGACATCATCCTATCT
GAAGCAAAGCACGGCAAATTGAAGCAGGGGCTGCACGGCGACAAGACATA
TTCTACCTCGCTTGCTAGATGCATACACAAAAAATAATACCGTGCACTTC
CCGTGTCGCCTATGATGCGGAGAGAAGAAGAGGCCGGAGGCGACGGCGCT
GGCGGCCGGGAGGCTTTGACAAAGGAACAGGGGTGGAGCAACTGCCTGCG
GTGCTCCTGACGCTAATAATAATGAGgtgcgtgtaaatgacaaagttgca
gcgaacggcctccgtgcctctttcaagggatgtaagaggaggaggaaagg
tgggacgaggaggaaaattgtaaacaagaggttatacgaggacgcgcgat
aggggtcgattggtccaagcacgttgccgcccacctcacttcccctcgac
ctcatacccctaccctaaccacagCCCCCTCTTTCTTTTCTTCATCCTCC
TATCCCTGCCTGCCCGAGCGACGGCCTTCTTTCTCCCTCTCTCGCCTTCT
TCCTCCCTCCCTTCCTCCTCATGGCACCCGGCCCCCTCCTTCCGCTCCCC
CTCCTCCTTGCCCTCTCCCGTGTTCCTCCCTCCCACCTCCTCCCTCCTGG
CCACGCCGCCCGTAGTCCTGACGGAGGAAGAGGCAGAGCGCAGCAGCGAC
CTACTCGCGGAGCTCGACGAGCTGGCTGGACGAGGGAGGTACCAAGAGGC
TCTTGCTCTCTTGAAGAGCGGAGGGTCCACTGTGGGAGCTGTACACTACC
ACAAGgtaggggcgggagggagggagggagggagggagagtgatgagacg
gacgatttgacttgaatcatgtgtgattatttgttcattcctccctctgt
ccctcgttcttggtagGCCATCGTGGCGTGTAAGATGAGTCGACAGTGGG
CGCTGGCCCTGAGGCTCCTGGAAGAAATGCGGGCGATTCCAGGCATACAG
gtaggtagggaggtagagaggtagggaggtagggaggtagggagggaggg
ggggaagcattgaatgggagggcacggtcactcatggtcatgagttcaag
tcttgccttttgatttatccctccctccctccctccctccctccctccct
cccgccatctctctctctctccctccgtccctccctccctcagGTGATGC
TTCACACCTACGGCACGGTCATGGACATCTGTGCCTCGGCCGGGCAGCTC
GATCAGGCCCTGCAGgtagggagggaggtagggagggagggaggggagaa
agcaggaaggatcaagagaaggtcgtgtgtcccactttcgttcccgttcc
aaccctccctccctccctccctccatccctccctccctccctccctccct
ccctccctccctcccgctccctagGTGGCGTCGTGGATGGAGTCCGCAGG
ACTGCCCCTCAACAAGGTAGCCTTTACCACCCTCCTCAAGGCGTGTGCCC
AGGCCAAGCAGGGCTTTCGCGCCCTGGAGGTGCTTCAGCGGCTGCATGCG
TCTGACATCTATTTCGACTACCTCGGCTACCTCAAGgtgtgtgtctgccc
cacccctctctccctccctccctccttcccttcctccctccctccctccc
tccctctcttcctccctcccttcctccctcccttcctccctccattcctc
cccttcgctcttcctcccggtaccgacctttcgtcttcccaacccctcct
ccgtccctccctccctccctccctctgtccttccctccctccctcactcc
agGCAGTGGAGATATTGGGGGCGTCGGGATTGGTCCACGAGGCCCTGAGC
GAGCTCGAGGGTATGCTCGAGGAGGAGGTGGCGGCCGACCATCGCATCTT
CTTCTCCTTGATACGgtacttccttcctccctccctcccttccttcctct
tccttcctccctccatccctccatccctccctccctccctccttacacag
tcactaaggcccttctggtgcctacccccgtccaaccctcccgccctccc
tccctccctccctccctccctccctccctcccttcccagAAACGCCCTCC
TCCACAACCATCTCCCCGTGGCTGCGCGCACCGCCGTGCTGATGGATACG
GAGGGCTGCACTCCCCCAGCCTCCTCCCTCAAGCTCTTAATGGAATCGTT
AATTAAAGCTGGATTAGCCGCCCGAGGACTGGAGCTGTTGGACACCGTCG
GTCCGGCGTCCTTCTCAGgtagcgagggagggagggagggaggggaaaga
aggctgtttgtcgcacaagaccatctcatctttaacccctccctccctcc
ctccctccctccctccctccctccctccctccctccctcccttcctcccc
ctccttcagGCATGTCGATCAAGGTCTGGTTCAATCTCCGCCTCCGCCTC
TGCCTGAGCTGTCGGGACAAGGAGGGCGCCTTCAAGGAGgtaggctatct
ctagagagggagggagggagggagggaggaaggcgagtgtgttatgccta
gttattcctttctcatattatttgtgcgcacgactcatctcccaccctcc
ctccttgcctccctccctccctccctccctgcctccctccgtccagCTGG
AGCAGATGCAGAACCAGGGCATCGAGCTCAACGACTCCCGCACCGTCTCC
CTCGCCCTCCGCCTCTTCACCCCCTCCCGCCCGCCCTCCCTCCCTCCCTC
CCGCCCCTCCTCCTGCTCCCTCCTCCGCCTCTTCCTCCTCCTCCGCGCCG
TCTCCGCCCCCCTCGATACGGTGGCCTATACCACCGCCATCGCCCACGCC
ACCGACAGCACCGAAGCCTACGCCCTCCTCGCCCTCATGGACCAGCCCCC
GCCCTCCCCCCCGCCCTCCCCAAATGACGTGACCTACACAGCCCTCATCC
ATCACCTGGTCCGAGAGGGTGACTTCCAGGCAGGGAAGGACATCCTCTTC
TCCATGAAGGCCAAGGGGATACCCCCCTCCTCCGTCACCATATGCGCCAT
TCTTAACGCCTACCTCAAGCAAAATCGGGCACAGGAGGCGCTGACCTTCT
TTCACACCGTCTTTCCTTCCTTCCCCCCTTCCTCCCCCCTCTCCTCCCCC
CCTCCCTCCCCTCCCGTCCACGACCTGGGCGTCGAGCTGGACCTGAAGCT
GCAGACCACCTACCTCTCCCTCCTCCTCGCCCTCCGTCGGCCCCTCTCCG
AGATCCAAGCCTACGTCCAGGCCGTGGAGAGCAGGGAGGGAGGGAGGGAG
GGGTGGAGGGAGGGAGGAGGGAAAATATACGCGCTGTGGGCCAAGGCCTG
TATGGCCGCTCGGGAATGGAAAGCGGCCGTGCGGTTGATCAAGgtaggga
gggagggagggagaaagggagggagaaaagaaaatcgaagcagaagaagg
cgtgaaaaacgttctctcctccccgtccctccctccctccctcccccccc
ccttgccttagCGCGGGCACACCCAGGGCGTGGATTTGGACAATCGCTTC
TACACCGTCTTGCTCGACGGGCTGGCGCAGgtaggtagggagggatggag
ggaagttgatgagctaggacaggacgattttgcggcatactcaaccctcc
ttccctccctccctccctccctccctccctccctccctccctccctcccc
cagGCCGGCCAAAGCAGCCAGGCCATGCATGTCTTTAAGGAGATGCAGAG
CAAGGGAATCACGCCTAATGCCTACGCCTATGCCGCTCTTCTCAAAGCCT
TCACCTCCTCCTCCTTCTCCTCTTCTTCATCTTCTGCCGCTCGCGCGGCG
CGCAGGAGAGGGAAAGAGGTCGAGGAGGGCGAGGGCGAGGAGGGCGAGGA
GGGAGGGAGGGGAGGAGGAGGGGCGGGGAGGAGGTTGAGGGAATACATTG
AGTTATTCGACGCGGCCGAGGCCGAGgtaggtagggagggagggagggag
ggagggagggagggagggcattagagactacggaggtctcgtggatggtc
aaactcgctcgccaccaccctacacttcctccctccctccctccctccct
ccctccctccctccctagGGACGGCTGACTCCCAGTGTCATCAATTATAA
CGCCCTCATCGACGCCTGTGGCAAAATCCAAGACCCCGCTGGCGCCGCCT
CCTTCTTCCAGCGACTGCAGgtaggcctctccctccctcccttcctccct
ccctccctcccttcctccctccttcccttctcgtccaaccctccctcgct
tcctcccgccctccctccagGCCTCCCCCTCCCTTCGCCCCGACGTAGTG
TCCTGgtcagtgctcattaaggctttggcccattctggcgatttcgacgg
ggctttcgccgcgctcaaggacatgatagcagCCGCAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGGGGGGGGCAGGTGGTGTGT
GGCCGACGGATCGGACGTTTAATCCGTTAATAGACCGATGCGCACGAGCA
Ggtagggagagagggagggagagagagagggagggagggagggagggagg
gagggaaatagggaaggatgagtggatgtgaggaaggcagagggagagat
cagggaggcatgctcacacagtccttcccatcctccctccctctctccct
ccctgcctgcagGCCGAGACGAGCTGGTGGAGGAGGCCTTGGCCCTGATG
AGGCAATACAGCACTCGTCCTCCGGACGTCATCACCTACAACTCCCTCCT
CACCGCCGAGCTGCTCCGCGGGGGGGGTCCACAAGGCGTGCTGGCGAGGA
TGAAGGAGgtggggagggagggagggaggtgggaagggaggaagggagaa
ggaaatcggcagcttctcaacatttctgcggagcgtctgtgcctcatttg
taatcaccttcctccatgcgttctgaccctcccctcccttcctccctcct
cagGGCCGGGTGAAGCCCAACACCATCACCTACAACATACTGCTCGATCA
TTATTCGCGCGCCGGCGACTGGTCCAAGGCCTTCGCGGCCCTCGAGGAGA
TGAAACAGgtagattaccctccctccctcactccctccctccgtccctcc
ctccctcccgcctgcccattcgccttcccgccctccctctctctttccca
taagcccacaccttgcattcaataatctttcccgcccttcctccctccct
ctctccctccagGCCTCCCTCGCCCCTGACGTGCAGACTTACAACCACCT
CCTCGACGGTCTCTCTCGAGCCGGGAAGTTTATAGAAGCCGAAACCCTCT
TCAAGAGGATGATGGGGGAGGACGAGGGGGAGGGAGGGAAGGAAGGAGGG
GTAGGCATGGATTCCTTCACGGCCTTAGTCATGCTGACGATGTACGGAAA
Ggtgggtgccgagggagggcgggagggagggcgggagggagggcgggagg
gagggcgggagggagggcggggtgggcgtagatggtcggtcacctggatg
ccaccaacattcatttttatggtctctcggcttcctcccttccttccttc
ctcccttcctccctccctccctccctttagCAAGGAGATCTGCATAAGGT
CGATGCGTTGGCGACCCGCCTCTTTCCCTCGATGCCGTCTGCTGAGGAGG
AGGAAGAGAGGGAGGGTGAGGGGTCACCGAAGAGCAAAACCCCGCCGGGA
GGAGGGAAGGACGCGAGAAGACGAGGGAGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGTCGGTCGAGGG
CAGCGTCGCCGGCCGTGGCGGCCAAGTTGGTCGGTATCTACCTGCAGgta
aggaaggagggagggagggaaggagggagggagggagggagggagagagg
gagagaagagggaaggaaggagaacatagggaagaagggagccaaatcac
cggtctttttccttcggatcaaccttattttcccctccctccctccctcc
caccctccctccctcccccagCACCAACAAGCCGGCCAGGTTGTCTCGCT
TCTCTCCTCCGTTCACTCCTCTCGCCTCTTTCCTATCCAGCCGTCCTGGA
TATCCTCCCTCGTCCTCCACTCCCTCCTCCGTTCCCGCCCTCAAGAAGCC
TTCCGAGTGTTGGAGCTTGCGCGATTTTCGTGGGGGGTACGTCTGAGTGG
GAAGACGTATGCCGCCCTGGCACGTGCAGTCCTGGAAGGGGGGGAAGGGA
GGGAGGGAGGGAGGGAGGCCGTGCAGGCGGTGGAGCTGCTGTTGCTGGAG
GGTCGGAGGAAGAGGGAGGTGGCGCTGTGTAAGGATTTGGGGCTAGTGTT
AGTACAGATGGTGAAGGCGGGAAGGAGGGTGAGGAGGAGGGAGGAGGGAG
GGAGGGAGGGGGAGGTGAAGGAGGTGATTGAGGAAATGGTGGTGAAGAGG
GTCGTGGGTAGGGAGGAGGCGGATGAGTGGCTGAGGGATATGGAGGAGGA
GGAGGAGGAAGAGGAGGAAGGAAGAGGGAGGGAGGAAGGGGGAGAGAGGG
AGGAGAATAGGATAGCATAGAGGGTTAGTGAGAATGAAATGTGTAAGGGA
AATGAATGTAAGCTGACGGAGTAGCGGGAGGGGAGGAGGGAGGGAGGGAG
GGCAGAGGAAGACGTCGATATAAAGCGATGGAAGAAAAGACCGTCGACAT
CAAAGGATTACGAAGCCATTGCTTATAGACAAAGATGAAGACAATCAAGG
CAAAGATAAAGAGAAATATAAAGATAAAGACGACTCTAAATTCCGCTTTA
ATATGGAGACCAGGAGCCAGTCGATTACTCACGACAACTACTGCTGTTGC
TGCGGCGGCGGCGATACCGCGGTGGTAGAATGATATGGGCCCATACTTCT
TTTTTTGTTTTCCCTTCTTTTCCCCTTCTTCTTCCCTTCTTTTTCTTATC
TTCTCCGTCTTCTTCTGTTTTTGCTTGTCCGTTGCCGATCTTTATCTGTG
TGAACCGAGCTGTCCGTACACAAAGCCTCCCTCCCTCCCCTTCCCTCCCT
CCCTCCC back to topprotein sequence of NO01G05640.1 >NO01G05640.1-protein ID=NO01G05640.1-protein|Name=NO01G05640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1260bp
MHTQKIIPCTSRVAYDAERRRGRRRRRWRPGGFDKGTGVEQLPAVLLTLI
IMSPLFLFFILLSLPARATAFFLPLSPSSSLPSSSWHPAPSFRSPSSLPS
PVFLPPTSSLLATPPVVLTEEEAERSSDLLAELDELAGRGRYQEALALLK
SGGSTVGAVHYHKAIVACKMSRQWALALRLLEEMRAIPGIQVMLHTYGTV
MDICASAGQLDQALQVASWMESAGLPLNKVAFTTLLKACAQAKQGFRALE
VLQRLHASDIYFDYLGYLKAVEILGASGLVHEALSELEGMLEEEVAADHR
IFFSLIRNALLHNHLPVAARTAVLMDTEGCTPPASSLKLLMESLIKAGLA
ARGLELLDTVGPASFSGMSIKVWFNLRLRLCLSCRDKEGAFKELEQMQNQ
GIELNDSRTVSLALRLFTPSRPPSLPPSRPSSCSLLRLFLLLRAVSAPLD
TVAYTTAIAHATDSTEAYALLALMDQPPPSPPPSPNDVTYTALIHHLVRE
GDFQAGKDILFSMKAKGIPPSSVTICAILNAYLKQNRAQEALTFFHTVFP
SFPPSSPLSSPPPSPPVHDLGVELDLKLQTTYLSLLLALRRPLSEIQAYV
QAVESREGGREGWREGGGKIYALWAKACMAAREWKAAVRLIKRGHTQGVD
LDNRFYTVLLDGLAQAGQSSQAMHVFKEMQSKGITPNAYAYAALLKAFTS
SSFSSSSSSAARAARRRGKEVEEGEGEEGEEGGRGGGGAGRRLREYIELF
DAAEAEGRLTPSVINYNALIDACGKIQDPAGAASFFQRLQASPSLRPDVV
SCRRRRRRRRRRRREGGRGGAGGVWPTDRTFNPLIDRCARAGRDELVEEA
LALMRQYSTRPPDVITYNSLLTAELLRGGGPQGVLARMKEGRVKPNTITY
NILLDHYSRAGDWSKAFAALEEMKQASLAPDVQTYNHLLDGLSRAGKFIE
AETLFKRMMGEDEGEGGKEGGVGMDSFTALVMLTMYGKQGDLHKVDALAT
RLFPSMPSAEEEEEREGEGSPKSKTPPGGGKDARRRGRGRGGGGGGGGEG
GGGGGGGGRSRAASPAVAAKLVGIYLQHQQAGQVVSLLSSVHSSRLFPIQ
PSWISSLVLHSLLRSRPQEAFRVLELARFSWGVRLSGKTYAALARAVLEG
GEGREGGREAVQAVELLLLEGRRKREVALCKDLGLVLVQMVKAGRRVRRR
EEGGREGEVKEVIEEMVVKRVVGREEADEWLRDMEEEEEEEEEGRGREEG
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