NO01G05450, NO01G05450 (gene) Nannochloropsis oceanica

Overview
NameNO01G05450
Unique NameNO01G05450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3512
Alignment locationchr1:1495503..1499014 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1495503..1499014 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05450.1NO01G05450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577800gene_574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05450.1NO01G05450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05450 ID=NO01G05450|Name=NO01G05450|organism=Nannochloropsis oceanica|type=gene|length=3512bp
ACAGTCTACAACCTCTATAATGAAACCGTTCACAAAAGACAAGACAACTA
CGTCCATAAAGCGGGAATCAGATGGAGTAGTGTTTGAGgtacgttccaca
gtatgagattagagggccagtgctgacatctccattgtaatatgtgtcaa
gattctcggccataagcgtcgcaacccactcgttcaccactatttcgaca
gGTGGATCAACGAGTAAGCTTCATTGACCCACAGTCAGGCATTTATACGG
ACGGAATCGTGATTGGTATCCATGGACCTGAGGAAATCGAGGTCGGGTAT
TGGCGTTCAAGTTGGTCGGATACCAAgtaagtgctactttcatatgactg
tccaaactgtatcgaatgccgtaaaagactgttgagaatttgttttcttg
catgcattctggatgttgtttggttcatgagttttaaatcttcaatttct
cgaccttaaacccgctttttatgtattctagGTACAACCGATTGGTTTCC
GTTGACACACTCCTGAGGTGCGGCAAGGTCTCTGGCTCGATGAAGAGGgt
acgtatgcttggtcgtcgacgattttgaacgctttctagaccttgcttta
tttgaaggctacagtggcggtcgcagatactaagacacaaatatatatgc
ctgtacacatacgcaatagAAATCTACAGCTGCAGCTGCCGCCCCCTCGC
CGACGCCAGCGGACACAGCGAAAAGCGCAAATAGCACCACGTCTGTCAAT
AGGGCTTCAGCAAGCGCAGAGATAGCCTCAGGCTCGACGACTGGGACAGT
TAGCTTCACGAGTACTAGCACAAACAGCAAGGCGTCGACGGCAGAAGTAA
CATCGCCAAAAAGAGgtgcgttcagatttgctttcccagtgttacaaaga
cacactcgaatgctcactatttttgcttttcccgaaatatatgcaatgtc
tgccctttacttgcacgcataacacgcatatcaaagACATAGAGAATAAC
GTCACTGCTTTCTCCGTCAAGAAAGATGCGAACACGCCTACCCCGGCTGA
TGAAGCAGACTCGACGACCCCAGGTGCTGATGCGGCACCAAGCAGCGCTC
AGGTGACATCAGTGAAGGGCTTGTCCTCCTTTGGTGCTCCTAACGAAGAA
TCGTTGGCGCCCACGAAAGAGTGCTCCTCAGTTCCTGACTCAGTTCCTGA
GTGTCGGTCCACCACCGCCATCTCTCCCGCATTTGCGTCGCTACCACAGA
AGGGAGGCACGGATCCTACTACAGTCACTTCTTCCAAGGCCATCGCGGCT
TCTGTACCCATTATTAAGGATTTCCATGTTCGTACTTCCGCCCGTGTCTC
GGCTTGCCCCTTATGCATTGGTTGTGGCACACGAGGTCCTCCTTTGACCG
CCAGATCCACGATCTCCAAGGAATGGACATGCCAGGCCTGCTTGGAACAC
GTGAACTCCTGTTCCCCCAACTCTTCTTTAGCGCCTGTCAGCATGAAAGA
TCCACTAGCACCAGCAGGACCGGGGAAAGTAAAGAAACGAGACCGTGAAA
CAGAAAGCGGACGAAGCAAACAGAGAGGTGAAAAGAAACAAGGGAAGGCT
TTCCCAGACACGAACAGCGTCTACACGCGCGATATGGGGAAGAATGATGG
GGAACGAGAAACCAAGTCGGCTGAAGAGGATCACTTCGAGGCAGAGGGCC
TGGCTCCCTCTATTCAAGCTGCGCTGGGTATCAGCCGGTCTTTCCCCCCT
CTCCAGGCTCCGGCAACCTCAGCAGACGCATCGGGTTCCAGTACCTCAGG
TCCTGGCATCACCCAAGAATGTACTTCTTCTCTTTTCCCCCTTGCTTCCA
AAGCGCCCACACCCACATCGGAACTCGCTGCTGGAGCGGAGGTAGCTAAT
TACAGCGCTTCTGTACGTCCACACACTGTTCCCCTGCAGCAGCAGCAGCA
GTCTCTGGACCCCTCCAGCCTAGAAGCGgtacgtacatgacgcaggtcac
aacagcatgcatgtatatgtatgtgttcatattgagatagatttacccct
cttcgcagcatcccttgcacatatccacttccctttctttcctgctgctt
ctcaccttcctctgccccctcgcagAACTTTCTTCTCAACCCCCTCGAGG
GCGGCGAATCCCATCCGCTTTACGCTTGGATGCCTTCAGGCTTGAGCGCA
GAGGAACGAAATTTGCAGATTCAAAAGGGAAAAAAGGACATGTGGGGGAC
AGCCGTGGCATTGGTTCGTCTCCGAGAAGAAGTGGAGCGGTGCTTCCAAA
CGATGGACGGAGAAGAGGGCCTGCATCTCGCGGTGGCTCGGCATAAGCAG
CAACAGCACCACCTCGCACAGCCATTGCCTCTACAGTCCGTCACATCTCA
ATCATCCTTTATGCCGCATGGCTCCATGCATGGGTCGTACCTTCATCGTC
ATCCGCAGCAGCAGCAGCAGCAGCAGCTGCAGCTGCAGCAGCGTCTTCTT
AATGGCCGTGTCCCTATATCTCACCACCTTGCATGCCAGTCTACCTCTTC
TCCGATCGCAGGACTGCATTTCCCCAACTCTCACCTTACCTCACCGGACC
CGGCACCATCTATTACCGAGCCAAGGCATCATTTCGGCCAGGGACTTCCG
TACCAGCCTCCTCCTCTTTCACTAAGTTCTCTATGTGCTCCTCCCCAAAG
CTACGTGCAGGGGCATGATTCTTTTTGTCACCAGCAAGGTCAGCAGCCTT
TACATGTCAATCATCAGCAGCATCCGCCACAGACACGACACATGTACGCT
TACCCACGGTACCAGGAGAAACAGCAGCAGCAGAAACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGATGATGTACCAGTACCGATAAGGGAGAATTA
TCTGTAAGGTAGCAAGAAAAGGGCCGGAAAAGAGGTAAGGGATGAATCGG
ATGCTATGAGAGGAAATAAAGGGGTAAGACATTGGGCACAGAATAGCGTG
CATGGTAGATCGATAGATCCTACAAGGCAGGCATTAGATTCAAAAGAATG
ACGTGGAAAGAAGACAAAAATTATAGACACATAGTGCATAAGGAAGATAA
ACAGTCTTATGCGGATAAAGGTGAGGAGGCGGGGGAGTAGAGGGGGATAA
TGGTGGTAGGAGAAGATAAAATAGTATTTAAAAGCAATAGAGAGAAATAG
CCTTAGAGTACATAGACAAGACAGATTCAAAGCGCGCTTCTTGCCATGAA
ATACTAACTGTATAAACGTCTATAGGACAATCAAAAGACGAGATTAGTGG
TAGAAAGTAGACAGAAAGTAAGCTACGCATGCTTGGGTTGGTGTGCACAC
TTTTGAGCCTAGAAGGGATAGGGAAAATGAAGGAACAGAGAAAAAATTTA
GGCAACGAGAAATGGGAGACAAAATCGCGACTGTAAAGACATAAGCAAGA
ACAAAAAGCACAATTATTTAACAGTTTACACAAAGTTAAACGAAGGCCTG
CCTTGCATATTC
back to top

protein sequence of NO01G05450.1

>NO01G05450.1-protein ID=NO01G05450.1-protein|Name=NO01G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MKPFTKDKTTTSIKRESDGVVFEVDQRVSFIDPQSGIYTDGIVIGIHGPE
EIEVGYWRSSWSDTKYNRLVSVDTLLRCGKVSGSMKRKSTAAAAAPSPTP
ADTAKSANSTTSVNRASASAEIASGSTTGTVSFTSTSTNSKASTAEVTSP
KRDIENNVTAFSVKKDANTPTPADEADSTTPGADAAPSSAQVTSVKGLSS
FGAPNEESLAPTKECSSVPDSVPECRSTTAISPAFASLPQKGGTDPTTVT
SSKAIAASVPIIKDFHVRTSARVSACPLCIGCGTRGPPLTARSTISKEWT
CQACLEHVNSCSPNSSLAPVSMKDPLAPAGPGKVKKRDRETESGRSKQRG
EKKQGKAFPDTNSVYTRDMGKNDGERETKSAEEDHFEAEGLAPSIQAALG
ISRSFPPLQAPATSADASGSSTSGPGITQECTSSLFPLASKAPTPTSELA
AGAEVANYSASVRPHTVPLQQQQQSLDPSSLEANFLLNPLEGGESHPLYA
WMPSGLSAEERNLQIQKGKKDMWGTAVALVRLREEVERCFQTMDGEEGLH
LAVARHKQQQHHLAQPLPLQSVTSQSSFMPHGSMHGSYLHRHPQQQQQQQ
LQLQQRLLNGRVPISHHLACQSTSSPIAGLHFPNSHLTSPDPAPSITEPR
HHFGQGLPYQPPPLSLSSLCAPPQSYVQGHDSFCHQQGQQPLHVNHQQHP
PQTRHMYAYPRYQEKQQQQKQQQQQQQQQQQMMYQYR*
back to top
Synonyms
Publications