NO01G05300, NO01G05300 (gene) Nannochloropsis oceanica

Overview
NameNO01G05300
Unique NameNO01G05300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1812
Alignment locationchr1:1413532..1415343 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1413532..1415343 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G05300 vs. NCBI_GenBank
Match: EWM22748.1 (hypothetical protein Naga_100143g3 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 7.500e-27
Identity = 118/324 (36.42%), Postives = 153/324 (47.22%), Query Frame = 0 
Query:  210 WQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEEKEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASESTFADVFQVYEAHIARVEQEVQILRARNIHLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPTSVGQNDDGEGHDHSINDGEEDRDGSIHHNGNSSLERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSKHSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELRRRERQSLVQKRVVETTWARVMKVQAMAKGLEGS 534
            +Q   Q QP  A       +  A  P+   S +LL ML EEKE+G+ Q ARI+ LE+A  E  QE +VA+A+ARLE HEL+ MLRR+ASESTF+DVF +YEAHIARVE+E  +LR RN+HLE                                L      +   G+G   +   GE D  G    +  +    R           K R+SL   +    H               NA+       +   T  +    +   T  + AL+ ++K+LQR             RRERQ LVQKR+VETTWARV KVQ MAKGLE S
Sbjct:  200 YQELHQAQPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLE-----------------------------AWRLDQRQQSEESRGQGRADACG-GEGDSQGCNRPDRPTPSPSR-----------KNRKSLYGATKPAPH---------------NAQDTFWSPTSALSTAMRMNGSQPAPTGVLVALKGKVKELQRXXXXXXXXXXXXXRRERQFLVQKRMVETTWARVQKVQFMAKGLESS 467
[Close]
BLAST of NO01G05300 vs. NCBI_GenBank
Match: XP_005855363.1 (hypothetical protein NGA_2048100, partial [Nannochloropsis gaditana CCMP526] >EKU20997.1 hypothetical protein NGA_2048100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 4.400e-19
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 0 
Query:  210 WQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEEKEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASESTFADVFQVYEAHIARVEQEVQILRARNIHLE 332
            +Q   Q  P  A       +  A  P+   S +LL ML EEKE+G+ Q ARI+ LE+A  E  QE +VA+A+ARLE HEL+ MLRR+ASESTF+DVF +YEAHIARVE+E  +LR RN+HLE
Sbjct:   23 YQELHQAPPSWAPETQHEESSLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLE 144
The following BLAST results are available for this feature:
BLAST of NO01G05300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22748.17.500e-2736.42hypothetical protein Naga_100143g3 [Nannochloropsi... [more]
XP_005855363.14.400e-1954.10hypothetical protein NGA_2048100, partial [Nannoch... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006290NSK006290Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05300.1NO01G05300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|245154gene_563Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100143g3gene7692Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05300.1NO01G05300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05300 ID=NO01G05300|Name=NO01G05300|organism=Nannochloropsis oceanica|type=gene|length=1812bp
ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA
back to top

protein sequence of NO01G05300.1

>NO01G05300.1-protein ID=NO01G05300.1-protein|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MSTPPGRSNTTALARISSDEQLLRDFREAKQSILTSTTAHNLATSPPPRR
TAELNLGDGQLQREITSIVEMPRLERAAAASERKGDDDPFKWVDEQSDVR
VNCVPAADPLSPSGVSSRASSPNSTSSSEENNDDERSASSCRSRSRANPI
TSTPSLYSSSSSSSSSPSSSSSSSFSSPPQSQFFDASMANKPFSFAEELQ
WPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEE
KEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASES
TFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQ
EEEEKEEEEEEEGLQPTSVGQNDDGEGHDHSINDGEEDRDGSIHHNGNSS
LERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSK
HSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELR
RRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEE
AEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGNGPSSRQGGESR
ETR*
back to top
Synonyms
Publications