NO01G05250, NO01G05250 (gene) Nannochloropsis oceanica

Overview
NameNO01G05250
Unique NameNO01G05250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2514
Alignment locationchr1:1400376..1402889 -

Link to JBrowse

Properties
Property NameValue
DescriptionElongation of fatty acids protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1400376..1402889 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Homology
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_012212473.1 (hypothetical protein SPRG_17697 [Saprolegnia parasitica CBS 223.65] >KDO16818.1 hypothetical protein SPRG_17697 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 261.9 bits (668), Expect = 2.600e-66
Identity = 136/268 (50.75%), Postives = 172/268 (64.18%), Query Frame = 0
Query:   30 KVPFTQLFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            + PF  L + YP L PLY   +E++F  S    F  D+   L + LC +Y ++   G  VM SR   + KTALA WNL+L+ FSFCG +RTVP LL ++       +IC      YG G  G+WV LFIFSKVPEL+DT FIV RK  L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHAIMY YY+LTA    P+W    ++TVAQ+SQM+VGV +C  S  ++      C V   N+  G LMY SY  LF  FF+ R+
Sbjct:    2 RAPF--LHEAYPALSPLYPFAFERDFVLSWQPGFCADSMG-LAIGLCAVYCVLCYTGRHVMASRAPFDLKTALAAWNLLLATFSFCGAVRTVPFLLDSIYQRGAYASICSEATNHYGNGPTGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTARGYRPRW--ALLVTVAQLSQMVVGVAVCTMSVLYI-RQGASCHVNHDNLKWGILMYSSYFALFLKFFIERY 263          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_012202668.1 (hypothetical protein SPRG_07927 [Saprolegnia parasitica CBS 223.65] >KDO26525.1 hypothetical protein SPRG_07927 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 261.5 bits (667), Expect = 3.300e-66
Identity = 136/268 (50.75%), Postives = 172/268 (64.18%), Query Frame = 0
Query:   30 KVPFTQLFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            + PF  L + YP L PLY   +E++F  S    F  D+   L + LC +Y ++   G  VM SR   + KTALA WNL+L+ FSFCG +RTVP LL ++       +IC      YG G  G+WV LFIFSKVPEL+DT FIV RK  L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHAIMY YY+LTA    P+W    ++TVAQ+SQM+VGV +C  S  ++      C V   N+  G LMY SY  LF  FF+ R+
Sbjct:    2 RAPF--LHEAYPALSPLYPFAFERDFVLSWQPGFCADSMG-LAIGLCAVYCVLCYTGRHVMASRAPFDLKTALAAWNLLLATFSFCGAVRTVPFLLDSIYQRGAYASICSEATNHYGNGPTGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTARGYRPRW--ALLVTVAQLSQMVVGVAVCTMSVLYI-RQGASCHVDESNLSWGILMYSSYFALFLKFFIERY 263          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_012202669.1 (hypothetical protein SPRG_07928 [Saprolegnia parasitica CBS 223.65] >KDO26526.1 hypothetical protein SPRG_07928 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 260.0 bits (663), Expect = 9.700e-66
Identity = 135/268 (50.37%), Postives = 172/268 (64.18%), Query Frame = 0
Query:   30 KVPFTQLFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            + PF  L + YP L PLY   +E++F  +    F  D+   L + LC +Y ++   G  VM SR   + KTALA WNL+L+ FSFCG +RTVP LL ++       +IC      YG G  G+WV LFIFSKVPEL+DT FIV RK  L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHAIMY YY+LTA    P+W    ++TVAQ+SQM+VGV +C  S  ++      C V   N+  G LMY SY  LF  FF+ R+
Sbjct:    2 RAPF--LHEAYPALSPLYPFAFERDFVPTWQPGFCADSMG-LAIGLCAVYCVLCYTGRHVMASRAPFDLKTALAAWNLLLATFSFCGAVRTVPFLLDSIYQRGAYASICSEATNHYGNGPTGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTARGYRPRW--ALLVTVAQLSQMVVGVAVCTMSVLYI-RQGAVCHVNHDNLKWGILMYSSYFALFLKFFIERY 263          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_008620377.1 (hypothetical protein SDRG_15967 [Saprolegnia diclina VS20] >EQC26232.1 hypothetical protein SDRG_15967 [Saprolegnia diclina VS20])

HSP 1 Score: 259.2 bits (661), Expect = 1.700e-65
Identity = 134/262 (51.15%), Postives = 169/262 (64.50%), Query Frame = 0
Query:   36 LFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            L + YP L PLY   +E++F  S    F  D+   L + LC +Y ++   G   M SR   + KTALA WNL+L+ FSFCG +RTVP LL ++       +IC    + YG G  G+WV LFIFSKVPEL+DT FIV RK  L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHAIMY YY+LTA    PKW    ++TVAQ+SQM+VGV +C  S  ++      C V   N+  G LMY SY  LF  FF+ R+
Sbjct:    6 LHEAYPALSPLYPFAFERDFVPSWQPGFCADSMG-LAIGLCAIYCVLCYTGRHFMASRAPFDLKTALAGWNLLLATFSFCGAVRTVPFLLDSIYQRGAYASICSEATDHYGNGPTGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTARGYRPKW--ALLVTVAQLSQMVVGVAVCTMSVLYIRRGAT-CYVNHDNLKWGILMYSSYFALFLKFFIERY 263          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: OEU18932.1 (GNS1/SUR4 membrane protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 256.1 bits (653), Expect = 1.400e-64
Identity = 127/276 (46.01%), Postives = 175/276 (63.41%), Query Frame = 0
Query:   31 VPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAET---YGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFL--RGGK 302
            + + +    YP L+P Y ++EKN+     +++ +    ++P+    +Y ++I VG   M +R     +  +A WNL LS+FS+ GM RT+P LLHN+  L  +D +C    ET   YG G+ G+W +LF+ SK PEL+DT FIV  K  L FLHWYHHITVLL+CWHSY  TS  G++F  MNYSVHA MY YY+L A+   PKW  P IIT+ QISQM+VGV +  + FY+  TDP  C ++ +N  A  +MYGSYL+LF  FF  R+   +GGK
Sbjct:   17 IAYREFSCEYPQLEPFYFEFEKNYDPIPLLEWMR-YHSMIPVYAVILYGVLITVGQYAMRNREPFNLRRLMAFWNLALSVFSWIGMFRTLPQLLHNLYHLSMRDNLCMDSRETIASYGSGSSGLWFLLFVLSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPLGIFFSVMNYSVHASMYGYYFLMAMKMRPKWFNPIIITIFQISQMVVGVSVTLAGFYYYKTDPT-CGIQNENNTAAFVMYGSYLFLFLQFFFGRYFKKKGGK 290          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: OQS05290.1 (elongation of very long chain fatty acids protein [Thraustotheca clavata])

HSP 1 Score: 252.7 bits (644), Expect = 1.600e-63
Identity = 128/268 (47.76%), Postives = 173/268 (64.55%), Query Frame = 0
Query:   30 KVPFTQLFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            +VP+  L + +P L  LY   +E +F  S   +F  ++     +ALC +Y ++   G  +M +R   + K ALA WNL+L+ FSFCG +RT P L+H++       +IC    + YG G  G+WV LFIFSKVPEL+DT FIV RK  L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHAIMY YY+LTAI   P+W    ++T+ Q+SQM+VGV +C  S  ++    + C V   N+  G LMY SY  LF  FF+ R+
Sbjct:    2 RVPY--LHEVFPSLSLLYPFSFENDFVLSWQPEFCAESMQ-YAVALCALYCILCYSGRHIMANRSPFDLKWALAGWNLLLATFSFCGAVRTAPFLIHSIYERGLYHSICSEATDHYGNGPVGLWVALFIFSKVPELIDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTAIGYRPQW--ALMVTIVQLSQMVVGVAVCTMSVLYI-RQGDACYVDHSNLKWGILMYSSYFILFLKFFIERY 263          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_008865117.1 (hypothetical protein H310_03128 [Aphanomyces invadans] >XP_008865118.1 hypothetical protein, variant 1 [Aphanomyces invadans] >ETW07042.1 hypothetical protein H310_03128 [Aphanomyces invadans] >ETW07043.1 hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 250.8 bits (639), Expect = 5.900e-63
Identity = 126/266 (47.37%), Postives = 167/266 (62.78%), Query Frame = 0
Query:   36 LFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEH----CQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            L + YP L PLY   +E +F  +   +F + T   + +ALC  Y     VG K M SR   +   ALA WNL LS+FS CG +RTVP L+H++       ++C      YG G  G WV LFIFSK+PEL DT F+V RK  L+FLHWYHHITVLL+CWH+Y+V SS+GLYFVAMNY+VHA+MY YY+LTA+   P+W    ++T+ Q+SQM+VGV +C ++  FL T        C     N+  G +MY SY  LF  FF++R+
Sbjct:   18 LHEFYPCLAPLYPFAFENSFMLTWEAQFCRSTM-YMCMALCAAYGFSCYVGKKFMRSREAFDLTPALALWNLTLSVFSACGALRTVPFLVHSIYHHGVYHSVCSDATLHYGNGPVGFWVSLFIFSKIPELFDTFFVVIRKKPLRFLHWYHHITVLLYCWHAYSVLSSSGLYFVAMNYTVHAVMYMYYFLTALGYRPRW--AYVVTMLQMSQMVVGVAVCVANVIFLSTSSSPSSAVCHASHSNLLFGVVMYASYFALFLHFFIQRY 280          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: EWM28304.1 (fatty-acyl [Nannochloropsis gaditana])

HSP 1 Score: 247.7 bits (631), Expect = 5.000e-62
Identity = 132/283 (46.64%), Postives = 170/283 (60.07%), Query Frame = 0
Query:   33 FTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFL-YTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTM 315
            FTQLFQ  P ++P Y ++EK + +S   ++ +   P +P+A   +Y + I  G  +M +R   + K  LA WNL LS+FS  GM+R VPHL++  AT       C  P   YG  A G WV  FI SK+ EL+DT FIV RK  LQFLHWYHH+TVLLF W  Y    + G+ FVAMNYSVHAIMY YY+L A+   P W+ P  IT+ QISQM+VGV   A  FY +     E C V +  + A  +MY +YLYLFC+F VRRF+ G K      K+ V  M
Sbjct:   41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSV-PWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCY-THENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAA--FYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKM 319          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: XP_009841925.1 (hypothetical protein H257_15499 [Aphanomyces astaci] >ETV68496.1 hypothetical protein H257_15499 [Aphanomyces astaci])

HSP 1 Score: 242.3 bits (617), Expect = 2.100e-60
Identity = 124/266 (46.62%), Postives = 162/266 (60.90%), Query Frame = 0
Query:   36 LFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASS----FYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRF 297
            L + YP L  LY   +E  F  +   +F + T   L +ALC  Y      G ++M SR   +    LA WNL LS FS CG +RTVP LLH++       ++C      YG G  G+WV +FIFSK+PEL DT F+V RK  L+FLHWYHHITVLLFCWH+Y+V SS+GLYFVAMNY+VHA+MY YY+LTA+   P+W    ++T  Q+SQM+VGV +CA+S              C   R N+  G +MY SY  LF  FF++R+
Sbjct:   16 LHEQYPRLAVLYPFAFENTFMLTWEAQFCRSTMH-LCVALCAAYCFSCYFGKQIMRSREAFDMTPVLALWNLSLSTFSACGALRTVPFLLHSIYHHGVYHSVCSDATAHYGNGPVGLWVSMFIFSKIPELFDTFFVVIRKKPLRFLHWYHHITVLLFCWHAYSVRSSSGLYFVAMNYTVHAVMYMYYFLTAVGYRPRW--AYLVTTLQLSQMVVGVAVCAASXXXXXXXXXXXXXXCHANRTNLQYGIVMYASYFALFLHFFIQRY 278          
BLAST of NO01G05250 vs. NCBI_GenBank
Match: OQR86310.1 (elongation of very long chain fatty acids protein [Achlya hypogyna])

HSP 1 Score: 242.3 bits (617), Expect = 2.100e-60
Identity = 128/268 (47.76%), Postives = 169/268 (63.06%), Query Frame = 0
Query:   36 LFQHYPVLDPLYT-QYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRR-FLRGGK 302
            L + YP L  LY  ++E  ++ +    F +DT P + + LC +Y ++ + G +VM SR     ++ALA WNL L++FS  G IRTVP LL+ +A   +   +C      YG G    WV LFIFSK+PELVDT+FIV RK  L FLHWYHHITVL+FCWH+YA  S +GL+FVAMNY+VH +MY YY+L AI     W     +TV Q+ QM+VGV +CAS  Y+L +    CQ+ R N+  G LMY SY  LF  FF+ R F +G K
Sbjct:    9 LHEEYPALSFLYPFEWENQWFFTWEHGFCKDTMPHV-VVLCAIYCVLCLGGREVMRSRQAFGLQSALALWNLGLAVFSIMGAIRTVPFLLNTLAVRGWHHAVCADAMPHYGHGPVSFWVTLFIFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPSGLFFVAMNYTVHGVMYFYYFLAAIGIRASW--AKFVTVIQLLQMVVGVAVCASGVYYLKSGVS-CQLDRDNLKWGILMYSSYFALFLKFFLERYFFKGNK 272          
The following BLAST results are available for this feature:
BLAST of NO01G05250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012212473.12.600e-6650.75hypothetical protein SPRG_17697 [Saprolegnia paras... [more]
XP_012202668.13.300e-6650.75hypothetical protein SPRG_07927 [Saprolegnia paras... [more]
XP_012202669.19.700e-6650.37hypothetical protein SPRG_07928 [Saprolegnia paras... [more]
XP_008620377.11.700e-6551.15hypothetical protein SDRG_15967 [Saprolegnia dicli... [more]
OEU18932.11.400e-6446.01GNS1/SUR4 membrane protein [Fragilariopsis cylindr... [more]
OQS05290.11.600e-6347.76elongation of very long chain fatty acids protein ... [more]
XP_008865117.15.900e-6347.37hypothetical protein H310_03128 [Aphanomyces invad... [more]
EWM28304.15.000e-6246.64fatty-acyl [Nannochloropsis gaditana][more]
XP_009841925.12.100e-6046.62hypothetical protein H257_15499 [Aphanomyces astac... [more]
OQR86310.12.100e-6047.76elongation of very long chain fatty acids protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007734NSK007734Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05250.1NO01G05250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577691gene_558Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g23gene1169Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05250.1NO01G05250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05250 ID=NO01G05250|Name=NO01G05250|organism=Nannochloropsis oceanica|type=gene|length=2514bp
CAACAGGTTTTCCTTCATCGTCTGGAGAGGAATAACCGAGCCCGCGCCGC
ACAGGAAGAAGAGAAGCAGCAGCATTGGAAGAAGATGCCCAAGCTCCCAG
AAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTC
CCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGgtacgcgtcac
cttcctcttttttcttcttgctacatcagatcatatttgtactatctacg
ctgtctactatcgaggaaagggcaaattgtgtgcgtgctgtgtacaagtt
tctctcttctcttcacaacgttgtgtcctcataatggtaccctgcctgat
gatatggtgcaacacacggcctcgcgcaggcgggcagtttctggtcatta
gcgttggcgctcatcgccttctgattctattggaataatagctcaattat
atagcatgcactggcttccccttgaaaatgagatgcgaatttctttactg
agttttatcccctttactctcccgcacctacagCTCTTTCAGCATTACCC
CGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATGCGAGTA
CTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTG
TGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCATGGTCTC
ACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACCTGATGT
TGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCATTTGCTG
CACAATGTGGCGACGTTGCCCTTTAAGgtaggtacccccctcgatcctct
cctccctcccttcctccctcactccctctctactatgcccccgtcctggc
ccctccgttgtcgtttggcgctggggcctccgatagttacagccacattc
acctgtaatattctcctattttacttcttttctcaattctcagGACACGA
TCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGG
GTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTT
TATCGTCTTTCGCAAAAGCAAGCTGCAGgtatgtatgtattacttttatc
tcctattgtttctgtctttccttcccgccctccattcgtcgtgtggatgt
aatagatgaaattcttgatcaagactttccagaaggctcggaattggagt
cggccgtgtgtgtggatggataccataagaaattaaagagctccgtctca
tctctcctcccaccattccccatcccattccgcacccaaccactcagTTC
CTGCATTGGTACCACCACATTACCGTCCTCCTCTTCTGCTGGCACTCATA
CGCCGTCACCTCCTCCACCGGCCTCTACTTCGTGGCCATGAACTACTCCG
TGCATGCCATCATGTACGCCTACTACTACCTGgtacgtgccttatttctc
ccgtccctctattagtttctttcccctcacgctaccgtctcatactttac
atatccttgtactcccactcataaggcttttcttttctcctctcccttcc
cccttccctaatcacctcccttagACTGCCATTAACGCCTGGCCTAAGTG
GATTCCCCCCTCCATCATCACCGTCGCGCAGATCTCGCAAATGATCGTCG
GTGTTGGAATCTGTGCTTCCTCTTTTTACTTCCTGTATACAGACCCAGAG
CATTGCCAGGTGAAGCGTCAAAATGTATACGCAGGGGCTCTAATGTATGG
AAGTTACCTATATCTGTTCTGTGACTTCTTTGTGCGACGTTTTTTGAGAG
GAGGCAAGCCAAGATTGGGAGAGGAGAAGAGTGCGGTGTTGACGATGGCC
AAGAAAATCAAGGCTATGTAAGGTGTAGGTGGAGAAGGAGGGAGGGAGGG
AGAGAGGGAGGGACGTTGCGCAGGGACGGGCCTTTGTTTTCGATACTGGA
TTTGTGAGTGTGAAGCGTATCTTCACAATGATAGGCAGACAGGACAGAGG
GAAGAAGGGAAGAGAAGAAGAGAAGAAAGATAGAACGAGAACGAGAACAG
AACGAGAGATAGAACGAGAACTGCAGGAGAAGGCAGGCGAGGGTAAAGGG
AGGGGATACTACAAAATAACCGCTTGATGAACCACGAGAGCACAGCGCCC
ACCGTGGGAAGGAAAGGAGAGAGAGAATGAGAAAGCGAGGAGCCGGTCAC
GGGGATGAGAAGGAAAGGGAATGATGAACAGCTAAAGGAGACTCCGCTGT
GATAGTTCTTGACCCGCCTGCGTTTGCTCTTCTTCCTCCCCGTGCTCCCT
CCCCCCCCACCTTCACCTCTCTTTGTGCATAACGAACAGCGAAAATGCAG
GACGTGTGGACGGAGGACAACAACAAGAAACAGATGAACACAGAGATCAT
AACGAATGATCGCAAAGAAACAAACAAAATCAGAAAGAAGAAAGCAACCG
ACACCGATAGACGA
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protein sequence of NO01G05250.1

>NO01G05250.1-protein ID=NO01G05250.1-protein|Name=NO01G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPKLPEISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQY
EKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTA
LACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACG
MWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTS
STGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGV
GICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGG
KPRLGEEKSAVLTMAKKIKAM*
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Synonyms
Publications