NO01G05250.1, NO01G05250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05250.1
Unique NameNO01G05250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1643
Alignment locationchr1:1400376..1402889 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1400376..1402889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05250.1 vs.
Match: ACV21066.1 (fatty acid elongase [Nannochloropsis oculata])

HSP 1 Score: 667.9 bits (1722), Expect = 1.600e-188
Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0 
Query:    1 MPKLPEISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTMAKKIKAM 322
            MPKLP+ISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTMAKKIKAM
Sbjct:    1 MPKLPKISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTMAKKIKAM 321
The following BLAST results are available for this feature:
BLAST of NO01G05250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ACV21066.11.600e-18899.69fatty acid elongase [Nannochloropsis oculata][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05250NO01G05250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05250.1NO01G05250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05250.1.cds1NO01G05250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05250.1.cds2NO01G05250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05250.1.cds3NO01G05250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05250.1.cds4NO01G05250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05250.1.cds5NO01G05250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05250.1 ID=NO01G05250.1|Name=NO01G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
CAACAGGTTTTCCTTCATCGTCTGGAGAGGAATAACCGAGCCCGCGCCGC
ACAGGAAGAAGAGAAGCAGCAGCATTGGAAGAAGATGCCCAAGCTCCCAG
AAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTC
CCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGCTCTTTCAGCA
TTACCCCGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATG
CGAGTACTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTT
GCCTTGTGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCAT
GGTCTCACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACC
TGATGTTGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCAT
TTGCTGCACAATGTGGCGACGTTGCCCTTTAAGGACACGATCTGCCGGCA
CCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGGGTGATGCTCT
TCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTTTATCGTCTTT
CGCAAAAGCAAGCTGCAGTTCCTGCATTGGTACCACCACATTACCGTCCT
CCTCTTCTGCTGGCACTCATACGCCGTCACCTCCTCCACCGGCCTCTACT
TCGTGGCCATGAACTACTCCGTGCATGCCATCATGTACGCCTACTACTAC
CTGACTGCCATTAACGCCTGGCCTAAGTGGATTCCCCCCTCCATCATCAC
CGTCGCGCAGATCTCGCAAATGATCGTCGGTGTTGGAATCTGTGCTTCCT
CTTTTTACTTCCTGTATACAGACCCAGAGCATTGCCAGGTGAAGCGTCAA
AATGTATACGCAGGGGCTCTAATGTATGGAAGTTACCTATATCTGTTCTG
TGACTTCTTTGTGCGACGTTTTTTGAGAGGAGGCAAGCCAAGATTGGGAG
AGGAGAAGAGTGCGGTGTTGACGATGGCCAAGAAAATCAAGGCTATGTAA
GGTGTAGGTGGAGAAGGAGGGAGGGAGGGAGAGAGGGAGGGACGTTGCGC
AGGGACGGGCCTTTGTTTTCGATACTGGATTTGTGAGTGTGAAGCGTATC
TTCACAATGATAGGCAGACAGGACAGAGGGAAGAAGGGAAGAGAAGAAGA
GAAGAAAGATAGAACGAGAACGAGAACAGAACGAGAGATAGAACGAGAAC
TGCAGGAGAAGGCAGGCGAGGGTAAAGGGAGGGGATACTACAAAATAACC
GCTTGATGAACCACGAGAGCACAGCGCCCACCGTGGGAAGGAAAGGAGAG
AGAGAATGAGAAAGCGAGGAGCCGGTCACGGGGATGAGAAGGAAAGGGAA
TGATGAACAGCTAAAGGAGACTCCGCTGTGATAGTTCTTGACCCGCCTGC
GTTTGCTCTTCTTCCTCCCCGTGCTCCCTCCCCCCCCACCTTCACCTCTC
TTTGTGCATAACGAACAGCGAAAATGCAGGACGTGTGGACGGAGGACAAC
AACAAGAAACAGATGAACACAGAGATCATAACGAATGATCGCAAAGAAAC
AAACAAAATCAGAAAGAAGAAAGCAACCGACACCGATAGACGA
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protein sequence of NO01G05250.1

>NO01G05250.1-protein ID=NO01G05250.1-protein|Name=NO01G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPKLPEISNIFKFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQY
EKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTA
LACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACG
MWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTS
STGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGV
GICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGG
KPRLGEEKSAVLTMAKKIKAM*
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mRNA from alignment at chr1:1400376..1402889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05250.1 ID=NO01G05250.1|Name=NO01G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp|location=Sequence derived from alignment at chr1:1400376..1402889- (Nannochloropsis oceanica)
CAACAGGTTTTCCTTCATCGTCTGGAGAGGAATAACCGAGCCCGCGCCGC
ACAGGAAGAAGAGAAGCAGCAGCATTGGAAGAAGATGCCCAAGCTCCCAG
AAATCTCTAACATCTTCAAATTCTTGAAGGCAGACCCTTCCAAGATCGTC
CCCTACAAGAGCATCCCGGACAAAGTGCCCTTCACACAGGTACGCGTCAC
CTTCCTCTTTTTTCTTCTTGCTACATCAGATCATATTTGTACTATCTACG
CTGTCTACTATCGAGGAAAGGGCAAATTGTGTGCGTGCTGTGTACAAGTT
TCTCTCTTCTCTTCACAACGTTGTGTCCTCATAATGGTACCCTGCCTGAT
GATATGGTGCAACACACGGCCTCGCGCAGGCGGGCAGTTTCTGGTCATTA
GCGTTGGCGCTCATCGCCTTCTGATTCTATTGGAATAATAGCTCAATTAT
ATAGCATGCACTGGCTTCCCCTTGAAAATGAGATGCGAATTTCTTTACTG
AGTTTTATCCCCTTTACTCTCCCGCACCTACAGCTCTTTCAGCATTACCC
CGTCTTAGACCCCTTGTATACCCAGTATGAGAAGAATTTCTATGCGAGTA
CTTACGTCAAATTTGCGCAAGACACCTGGCCGGTCCTTCCCCTTGCCTTG
TGCGGAATGTACGCGCTGATGATCATCGTCGGCACTAAAGTCATGGTCTC
ACGGCCCAAGCACGAGTGGAAGACGGCGTTGGCATGCTGGAACCTGATGT
TGAGCATTTTCTCCTTCTGTGGGATGATTAGGACGGTTCCGCATTTGCTG
CACAATGTGGCGACGTTGCCCTTTAAGGTAGGTACCCCCCTCGATCCTCT
CCTCCCTCCCTTCCTCCCTCACTCCCTCTCTACTATGCCCCCGTCCTGGC
CCCTCCGTTGTCGTTTGGCGCTGGGGCCTCCGATAGTTACAGCCACATTC
ACCTGTAATATTCTCCTATTTTACTTCTTTTCTCAATTCTCAGGACACGA
TCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGCATGTGG
GTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACACGGTCTT
TATCGTCTTTCGCAAAAGCAAGCTGCAGGTATGTATGTATTACTTTTATC
TCCTATTGTTTCTGTCTTTCCTTCCCGCCCTCCATTCGTCGTGTGGATGT
AATAGATGAAATTCTTGATCAAGACTTTCCAGAAGGCTCGGAATTGGAGT
CGGCCGTGTGTGTGGATGGATACCATAAGAAATTAAAGAGCTCCGTCTCA
TCTCTCCTCCCACCATTCCCCATCCCATTCCGCACCCAACCACTCAGTTC
CTGCATTGGTACCACCACATTACCGTCCTCCTCTTCTGCTGGCACTCATA
CGCCGTCACCTCCTCCACCGGCCTCTACTTCGTGGCCATGAACTACTCCG
TGCATGCCATCATGTACGCCTACTACTACCTGGTACGTGCCTTATTTCTC
CCGTCCCTCTATTAGTTTCTTTCCCCTCACGCTACCGTCTCATACTTTAC
ATATCCTTGTACTCCCACTCATAAGGCTTTTCTTTTCTCCTCTCCCTTCC
CCCTTCCCTAATCACCTCCCTTAGACTGCCATTAACGCCTGGCCTAAGTG
GATTCCCCCCTCCATCATCACCGTCGCGCAGATCTCGCAAATGATCGTCG
GTGTTGGAATCTGTGCTTCCTCTTTTTACTTCCTGTATACAGACCCAGAG
CATTGCCAGGTGAAGCGTCAAAATGTATACGCAGGGGCTCTAATGTATGG
AAGTTACCTATATCTGTTCTGTGACTTCTTTGTGCGACGTTTTTTGAGAG
GAGGCAAGCCAAGATTGGGAGAGGAGAAGAGTGCGGTGTTGACGATGGCC
AAGAAAATCAAGGCTATGTAAGGTGTAGGTGGAGAAGGAGGGAGGGAGGG
AGAGAGGGAGGGACGTTGCGCAGGGACGGGCCTTTGTTTTCGATACTGGA
TTTGTGAGTGTGAAGCGTATCTTCACAATGATAGGCAGACAGGACAGAGG
GAAGAAGGGAAGAGAAGAAGAGAAGAAAGATAGAACGAGAACGAGAACAG
AACGAGAGATAGAACGAGAACTGCAGGAGAAGGCAGGCGAGGGTAAAGGG
AGGGGATACTACAAAATAACCGCTTGATGAACCACGAGAGCACAGCGCCC
ACCGTGGGAAGGAAAGGAGAGAGAGAATGAGAAAGCGAGGAGCCGGTCAC
GGGGATGAGAAGGAAAGGGAATGATGAACAGCTAAAGGAGACTCCGCTGT
GATAGTTCTTGACCCGCCTGCGTTTGCTCTTCTTCCTCCCCGTGCTCCCT
CCCCCCCCACCTTCACCTCTCTTTGTGCATAACGAACAGCGAAAATGCAG
GACGTGTGGACGGAGGACAACAACAAGAAACAGATGAACACAGAGATCAT
AACGAATGATCGCAAAGAAACAAACAAAATCAGAAAGAAGAAAGCAACCG
ACACCGATAGACGA
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Coding sequence (CDS) from alignment at chr1:1400376..1402889-

>NO01G05250.1 ID=NO01G05250.1|Name=NO01G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr1:1400376..1402889- (Nannochloropsis oceanica)
ATGCCCAAGCTCCCAGAAATCTCTAACATCTTCAAATTCTTGAAGGCAGA
CCCTTCCAAGATCGTCCCCTACAAGAGCATCCCGGACAAAGTGCCCTTCA
CACAGCTCTTTCAGCATTACCCCGTCTTAGACCCCTTGTATACCCAGTAT
GAGAAGAATTTCTATGCGAGTACTTACGTCAAATTTGCGCAAGACACCTG
GCCGGTCCTTCCCCTTGCCTTGTGCGGAATGTACGCGCTGATGATCATCG
TCGGCACTAAAGTCATGGTCTCACGGCCCAAGCACGAGTGGAAGACGGCG
TTGGCATGCTGGAACCTGATGTTGAGCATTTTCTCCTTCTGTGGGATGAT
TAGGACGGTTCCGCATTTGCTGCACAATGTGGCGACGTTGCCCTTTAAGG
ACACGATCTGCCGGCACCCCGCGGAAACGTACGGTGAAGGGGCCTGCGGC
ATGTGGGTGATGCTCTTCATCTTCAGCAAAGTCCCCGAGCTAGTAGACAC
GGTCTTTATCGTCTTTCGCAAAAGCAAGCTGCAGTTCCTGCATTGGTACC
ACCACATTACCGTCCTCCTCTTCTGCTGGCACTCATACGCCGTCACCTCC
TCCACCGGCCTCTACTTCGTGGCCATGAACTACTCCGTGCATGCCATCAT
GTACGCCTACTACTACCTGACTGCCATTAACGCCTGGCCTAAGTGGATTC
CCCCCTCCATCATCACCGTCGCGCAGATCTCGCAAATGATCGTCGGTGTT
GGAATCTGTGCTTCCTCTTTTTACTTCCTGTATACAGACCCAGAGCATTG
CCAGGTGAAGCGTCAAAATGTATACGCAGGGGCTCTAATGTATGGAAGTT
ACCTATATCTGTTCTGTGACTTCTTTGTGCGACGTTTTTTGAGAGGAGGC
AAGCCAAGATTGGGAGAGGAGAAGAGTGCGGTGTTGACGATGGCCAAGAA
AATCAAGGCTATGTAA
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Synonyms
Publications