NO01G05150, NO01G05150 (gene) Nannochloropsis oceanica

Overview
NameNO01G05150
Unique NameNO01G05150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr1:1368465..1370050 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1368465..1370050 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G05150 vs. NCBI_GenBank
Match: EWM29454.1 (hypothetical protein Naga_100083g13 [Nannochloropsis gaditana])

HSP 1 Score: 390.6 bits (1002), Expect = 4.400e-105
Identity = 209/278 (75.18%), Postives = 238/278 (85.61%), Query Frame = 0
Query:   17 VVDSFVVPCQRPGLGPTMSSAQG---PASSPVTRGDLLKAGGTFFAFSF-VSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKR 291
            + +SF++P +       +S + G    A S  TRG  L AGG  FA SF +SP+P+WAR LP+GPSK+ELLEKTR KD+EDPVEKKARLAALRKERLERQRQLDAEEEARK DPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAA+ +LQAG+W+KVE+YA  EADNAALPLKLYASSLTGQGLSLDVSYVKVL+ Q +VYGKELE FKK VK++D  KAL++L +ME+AL LYRKTARIDK DGGVGEFPTD+KLGASFGNNNP+LYKK+
Sbjct:   23 LAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: XP_005855597.1 (hypothetical protein NGA_0640000 [Nannochloropsis gaditana CCMP526] >EKU20760.1 hypothetical protein NGA_0640000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 388.7 bits (997), Expect = 1.700e-104
Identity = 205/251 (81.67%), Postives = 227/251 (90.44%), Query Frame = 0
Query:   41 ASSPVTRGDLLKAGGTFFAFSF-VSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKR 291
            A S  TRG  L AGG  FA SF +SP+P+WAR LP+GPSK+ELLEKTR KD+EDPVEKKARLAALRKERLERQRQLDAEEEARK DPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAA+ +LQAG+W+KVE+YA  EADNAALPLKLYASSLTGQGLSLDVSYVKVL+ Q +VYGKELE FKKAVK++D  KAL++L +ME+AL LYRKTARIDK DGGVGEFPTD+KLGASFGNNNP+LYKK+
Sbjct:    9 APSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKAVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 259          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: CEL91696.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 141.7 bits (356), Expect = 3.500e-30
Identity = 85/212 (40.09%), Postives = 119/212 (56.13%), Query Frame = 0
Query:   78 SKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKK 290
            +K EL++KT  + T + +E +    A                             I+  L   Y YPTA+KRYLPRVKA AD +      ++AG+W KV+ +A   A+ A LPLKLYASSL GQGL+   S++KV+N +AE Y   L++F+KAV  KD   AL +L +M  +L+ YR+  +ID  DGGVG   +  + G+ F NNNP LY+K
Sbjct:   36 AKDELVKKTMREKTPEEIEAEKEALAQXXXXXXXXXXXXXXXXXXXXXXXXXXEGIEPTLYVQYTYPTARKRYLPRVKALADEIGGIAPLVEAGKWGKVKTFAEGTAEGARLPLKLYASSLAGQGLAQSASFIKVMNKEAEEYSASLDSFQKAVNKKDTNTALVSLAKMSTSLSTYRREGKIDTEDGGVGRVESQPR-GSGFFNNNPGLYQK 246          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: XP_002295717.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64434.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-18
Identity = 61/184 (33.15%), Postives = 100/184 (54.35%), Query Frame = 0
Query:  110 ERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE 294
            ++Q    A    R  +  + E +++ NLR++YYYPT + RYLPR+K  +D++P    ++    WD V  +A   AD+  LP+KLY SSLTG G ++ V + K +   A+ + K      K+V  KDA KA + L+ M  A+  YR + ++   DGG G+ P+  ++  S        ++ + KE
Sbjct:   97 DKQPVKKAATVERAVNKGKAESNMEPNLRSNYYYPTNKVRYLPRIKKCSDSIPQVAIAIGNEDWDSVRDFATVVADDTVLPMKLYVSSLTGGGTNVKVGFAKEMMAAAKTFEKNQSLLVKSVDKKDASKASAALEAMSEAMLAYRTSGKLLGPDGG-GDIPSVDEIRRSTKRFRGEAFEAKVKE 279          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: XP_002179596.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48582.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 100.5 bits (249), Expect = 9.000e-18
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 0
Query:  110 ERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPT 272
            ER+RQ  A     K      E D++ NLRA+YYYPT +KRYLPR+K   DA+P A  ++  G W  V  +AN  AD+  LP++LY SSL G G ++ V++ K +N  A+ + K  +   KA   +D   +   L+ +  AL  YR   ++   DGG G+ P+
Sbjct:   83 ERERQKVAARAVAK-----AESDVEPNLRANYYYPTNKKRYLPRIKRCNDAIPDAADAIGTGDWLVVTDFANKIADDTILPMRLYTSSLVGGGTNVKVAFAKEMNKAADDFEKAQKKLVKATAKQDREASSVALEDLATALQTYRVAGKLLGPDGG-GDIPS 238          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: OSX76934.1 (hypothetical protein BU14_0167s0009 [Porphyra umbilicalis])

HSP 1 Score: 100.5 bits (249), Expect = 9.000e-18
Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 0
Query:  133 IDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYA--NTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGN 282
            I+  LR SYY PTA+ RYLPRV+ AA++L  A  +   G W  + A A       +A  P++LYASSL GQGLS+     K ++   E Y   +    K  K +  G     LD + AA+  YR+  R++ AD G+ E  T  K+GA+FGN
Sbjct:   87 IEPTLRGSYYSPTAKLRYLPRVRRAAESLDEAVVAAADGNWAALAALAAPTGALGDAXAPMRLYASSLAGQGLSIASRAAKEMDAAGEAYAGAIAKLAKGAKKRSPGTVGPALDDLRAAMGAYRRAGRME-ADWGLSEITTTQKVGAAFGN 236          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: GAX16909.1 (hypothetical protein FisN_5Hh286 [Fistulifera solaris])

HSP 1 Score: 99.4 bits (246), Expect = 2.000e-17
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:  128 RKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE 294
            + E  I+ NLR++YYYPT +KRYLPR++  ++ +P     L +  W+ V+++A T AD+  LPLKLY SSLTG G ++ VSY K +   A+ +    +   KA+  KD   A   L+ M  AL+ YR  A + K D  +G+ P+   +  +        ++ + KE
Sbjct:   74 KSESVIEPNLRSNYYYPTNKKRYLPRIQKCSNMIPNVADLLGSQDWEAVDSFAKTVADDTILPLKLYTSSLTGGGTNVKVSYTKDMYACADQFESNQKRLLKAISKKDTALATEALEGMSEALSKYRTVAGL-KDD--MGDLPSVDDIRRAASRTQKLTFEGKMKE 236          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: GAX25204.1 (hypothetical protein FisN_5Lh286 [Fistulifera solaris])

HSP 1 Score: 98.6 bits (244), Expect = 3.400e-17
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:  128 RKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE 294
            + E  I+ NLR++YYYPT +KRYLPR++  ++ +P     L +  W+ V+++A T AD+  LPLKLY SSLTG G ++ VSY K +   A+ +    +   KA+  KD   A   L+ M  AL+ YR  A + K D  +G+ P+   +  +        ++ + KE
Sbjct:   74 KSESVIEPNLRSNYYYPTNKKRYLPRIQKCSNMIPNVADLLGSQDWEAVDSFAKTVADDTILPLKLYTSSLTGGGTNVKVSYTKDMYVCADQFETNQKRLLKAITKKDTALATEALEGMSEALSKYRTVAGL-KDD--MGDLPSVDDIRRAASRTQKLTFEGKMKE 236          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: XP_005842513.1 (hypothetical protein GUITHDRAFT_149817, partial [Guillardia theta CCMP2712] >EKX55533.1 hypothetical protein GUITHDRAFT_149817, partial [Guillardia theta CCMP2712])

HSP 1 Score: 87.0 bits (214), Expect = 1.000e-13
Identity = 70/232 (30.17%), Postives = 113/232 (48.71%), Query Frame = 0
Query:   29 GLGPTMSSAQGPASSPVTRGDLLKAGGTFFAFSFVSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQ--AGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTAR 259
            G G T SS+   +    +R ++L A         +  +P  A+      ++S L+      +T +  E+KAR+A                      +    +V++ +NLR  YY+PTA+KRYLPRVK A D L     ++Q  +  W  VE +A   AD     +KLY S+L G GLS+   +++ +   A+ Y ++ + FK+AV  KD+ KA+S    M++AL  YR   +
Sbjct:   50 GKGSTRSSSCKMSMETTSRRNVLLAAAVTTGSFLLHADPAAAK-----KARSTLVAPDGTVETIE--ERKARIAKXXXXXXXXXXXXXXXXXXXXEENGPVQVEMGSNLRGDYYFPTARKRYLPRVKGAYDGLQETIQTIQEASPDWKTVEQFAKGPADVTG-AMKLYVSALGGGGLSIQSKFMEAMGKAADEYDRDYKDFKQAVSKKDSSKAVSIAKSMQSALLAYRSAGK 273          
BLAST of NO01G05150 vs. NCBI_GenBank
Match: EJK46337.1 (hypothetical protein THAOC_34998 [Thalassiosira oceanica])

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-9
Identity = 47/169 (27.81%), Postives = 79/169 (46.75%), Query Frame = 0
Query:  125 DPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE 294
            D  +   +++ NLR++YYYPT + RYLPR+K  +DA+P    ++    W+ V  +A +                 G G ++ V +   +   A+ + K      KAV  KD  K    L+ M  AL  YR + R+   DGG G+ P+  ++  S        ++K+ K+
Sbjct:  107 DKGKAASNMEPNLRSNYYYPTNKVRYLPRIKKCSDAIPGVAEAIGREDWEAVNDFAKSR----------------GGGTNVKVGFAGEMTAAAKKFEKNQALLVKAVSKKDVAKTSDALEGMSEALLAYRTSGRLLGPDGG-GDIPSVDEIRRSTKRFRGEAFEKKIKD 258          
The following BLAST results are available for this feature:
BLAST of NO01G05150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM29454.14.400e-10575.18hypothetical protein Naga_100083g13 [Nannochlorops... [more]
XP_005855597.11.700e-10481.67hypothetical protein NGA_0640000 [Nannochloropsis ... [more]
CEL91696.13.500e-3040.09unnamed protein product [Vitrella brassicaformis C... [more]
XP_002295717.11.400e-1833.15predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002179596.19.000e-1838.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OSX76934.19.000e-1839.74hypothetical protein BU14_0167s0009 [Porphyra umbi... [more]
GAX16909.12.000e-1735.54hypothetical protein FisN_5Hh286 [Fistulifera sola... [more]
GAX25204.13.400e-1735.54hypothetical protein FisN_5Lh286 [Fistulifera sola... [more]
XP_005842513.11.000e-1330.17hypothetical protein GUITHDRAFT_149817, partial [G... [more]
EJK46337.12.000e-927.81hypothetical protein THAOC_34998 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007743NSK007743Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05150.1NO01G05150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577653gene_546Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g13gene1178Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05150.1NO01G05150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05150 ID=NO01G05150|Name=NO01G05150|organism=Nannochloropsis oceanica|type=gene|length=1586bp
TCGTGATATGTATATTTTTTCTTTCCCTCTTCTCACAATTATGATTCACC
CTTCCTCATGCGCATTTACGTCACCCTCTGTCCTGTGGTTTGTAAATTTT
GTATGGAGACCTGTCGAGTTCTGTTGATTATTCTGATTGATTGATTAATT
GGTTAATTGATTGATTCTTGTGAACAAACCTCCTCCTCATGTGGTCCATT
TGATGTTTGTCGTCCTGTTAAGCCAAGAGCGAGCATCCACGCTGATCCAT
GTCCACACTCACCAATGCAGCAGAGCCCTCCACACAAAGTGATGAAAAAA
TATGAAGGGAACTGCGAGTCAGAGGGCGTAACCGCTCTGCAAGTGAGATT
TGCGACTTTTCCCTTCGCTTTACTCATCACACAAACTGGCATCGATCCAA
CTAACTCCCAACACATTCACACAGAGGCATGTTGTGGCTGCGGCCAGCCT
TGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCT
TGCCAGCGTCCGGGATTAGgtaagaggcagatagaaagaaagcgggcctc
tcatcacggcaaacctgcgcttgtcccaaccatgcccactcatatcgact
gtgtcccttttaatccttcatcccaaatacacagGCCCAACCATGTCGTC
GGCGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTGCTCAAAG
CGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGG
GCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAAC
CAGAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCG
CCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGCCGAGGAA
GAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTGACGCCAA
TCTCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTACCTCCCCC
GCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAA
GCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGGCGGACAA
TGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTC
TATCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTG
TATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGC
CGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTTGCTCTCT
ACCGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTC
CCGACAGACAGTAAGTTGGGTGCTAGCTTTGGGAACAACAACCCGAGTTT
ATACAAAAAGCGAGGGAAGGAGTAATTGACAGATTAGTGGCCACGGAAGG
TTTTATAGAGCGCAAGTCCTCAGAAAGCAGGAGGCACACGTGTGATTATA
GTAGGGATTCAAAAAGAGGGTTGGCACCCTCGAGAAAACAAAAATACAAT
GACTAAAGAGATCAACAAGGAAAGGACTTCATGACA
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protein sequence of NO01G05150.1

>NO01G05150.1-protein ID=NO01G05150.1-protein|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLWLRPALFVALLCLVVVDSFVVPCQRPGLGPTMSSAQGPASSPVTRGDL
LKAGGTFFAFSFVSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKAR
LAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRY
LPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTG
QGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAAL
ALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE*
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Synonyms
Publications