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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1368465..1370050 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05150.1 vs.
Match: EWM29454.1 (hypothetical protein Naga_100083g13 [Nannochloropsis gaditana]) HSP 1 Score: 390.6 bits (1002), Expect = 4.400e-105 Identity = 209/278 (75.18%), Postives = 238/278 (85.61%), Query Frame = 0
Query: 17 VVDSFVVPCQRPGLGPTMSSAQG---PASSPVTRGDLLKAGGTFFAFSFV-SPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKR 291
+ +SF++P + +S + G A S TRG L AGG FA SF+ SP+P+WAR LP+GPSK+ELLEKTR KD+EDPVEKKARLAALRKERLERQRQLDAEEEARK DPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAA+ +LQAG+W+KVE+YA EADNAALPLKLYASSLTGQGLSLDVSYVKVL+ Q +VYGKELE FKK VK++D KAL++L +ME+AL LYRKTARIDK DGGVGEFPTD+KLGASFGNNNP+LYKK+
Sbjct: 23 LAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp TCGTGATATGTATATTTTTTCTTTCCCTCTTCTCACAATTATGATTCACC CTTCCTCATGCGCATTTACGTCACCCTCTGTCCTGTGGTTTGTAAATTTT GTATGGAGACCTGTCGAGTTCTGTTGATTATTCTGATTGATTGATTAATT GGTTAATTGATTGATTCTTGTGAACAAACCTCCTCCTCATGTGGTCCATT TGATGTTTGTCGTCCTGTTAAGCCAAGAGCGAGCATCCACGCTGATCCAT GTCCACACTCACCAATGCAGCAGAGCCCTCCACACAAAGTGATGAAAAAA TATGAAGGGAACTGCGAGTCAGAGGGCGTAACCGCTCTGCAAGTGAGATT TGCGACTTTTCCCTTCGCTTTACTCATCACACAAACTGGCATCGATCCAA CTAACTCCCAACACATTCACACAGAGGCATGTTGTGGCTGCGGCCAGCCT TGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCT TGCCAGCGTCCGGGATTAGGCCCAACCATGTCGTCGGCGCAGGGACCGGC GTCATCACCCGTGACACGCGGCGATCTGCTCAAAGCGGGCGGTACCTTTT TCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGGGCACGCGGCCTGCCT ACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAACCAGAAACAAGGACAC CGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCGCCCTCAGAAAAGAAC GCCTGGAACGCCAACGTCAACTGGATGCCGAGGAAGAGGCCCGCAAGAAC GACCCCAATCGCAAAGAAGTTGATATTGACGCCAATCTCCGTGCCTCCTA CTACTATCCCACTGCCCAAAAGCGCTACCTCCCCCGCGTCAAGGCCGCTG CGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAAGCTGGGCAATGGGAC AAAGTCGAAGCTTACGCCAACACGGAGGCGGACAATGCCGCCTTGCCCCT CAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTCTATCTCTGGACGTGT CCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTGTATGGAAAGGAGCTA GAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGCCGGCAAGGCCCTGTC TACCTTAGACAGAATGGAAGCTGCGCTTGCTCTCTACCGGAAGACGGCAC GGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTCCCGACAGACAGTAAG TTGGGTGCTAGCTTTGGGAACAACAACCCGAGTTTATACAAAAAGCGAGG GAAGGAGTAATTGACAGATTAGTGGCCACGGAAGGTTTTATAGAGCGCAA GTCCTCAGAAAGCAGGAGGCACACGTGTGATTATAGTAGGGATTCAAAAA GAGGGTTGGCACCCTCGAGAAAACAAAAATACAATGACTAAAGAGATCAA CAAGGAAAGGACTTCATGACA back to topprotein sequence of NO01G05150.1 >NO01G05150.1-protein ID=NO01G05150.1-protein|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp MLWLRPALFVALLCLVVVDSFVVPCQRPGLGPTMSSAQGPASSPVTRGDL LKAGGTFFAFSFVSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKAR LAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRY LPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTG QGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAAL ALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE* back to topmRNA from alignment at chr1:1368465..1370050- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr1:1368465..1370050- (Nannochloropsis oceanica) TCGTGATATGTATATTTTTTCTTTCCCTCTTCTCACAATTATGATTCACC
CTTCCTCATGCGCATTTACGTCACCCTCTGTCCTGTGGTTTGTAAATTTT
GTATGGAGACCTGTCGAGTTCTGTTGATTATTCTGATTGATTGATTAATT
GGTTAATTGATTGATTCTTGTGAACAAACCTCCTCCTCATGTGGTCCATT
TGATGTTTGTCGTCCTGTTAAGCCAAGAGCGAGCATCCACGCTGATCCAT
GTCCACACTCACCAATGCAGCAGAGCCCTCCACACAAAGTGATGAAAAAA
TATGAAGGGAACTGCGAGTCAGAGGGCGTAACCGCTCTGCAAGTGAGATT
TGCGACTTTTCCCTTCGCTTTACTCATCACACAAACTGGCATCGATCCAA
CTAACTCCCAACACATTCACACAGAGGCATGTTGTGGCTGCGGCCAGCCT
TGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCT
TGCCAGCGTCCGGGATTAGGTAAGAGGCAGATAGAAAGAAAGCGGGCCTC
TCATCACGGCAAACCTGCGCTTGTCCCAACCATGCCCACTCATATCGACT
GTGTCCCTTTTAATCCTTCATCCCAAATACACAGGCCCAACCATGTCGTC
GGCGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTGCTCAAAG
CGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGG
GCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAAC
CAGAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCG
CCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGCCGAGGAA
GAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTGACGCCAA
TCTCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTACCTCCCCC
GCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAA
GCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGGCGGACAA
TGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTC
TATCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTG
TATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGC
CGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTTGCTCTCT
ACCGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTC
CCGACAGACAGTAAGTTGGGTGCTAGCTTTGGGAACAACAACCCGAGTTT
ATACAAAAAGCGAGGGAAGGAGTAATTGACAGATTAGTGGCCACGGAAGG
TTTTATAGAGCGCAAGTCCTCAGAAAGCAGGAGGCACACGTGTGATTATA
GTAGGGATTCAAAAAGAGGGTTGGCACCCTCGAGAAAACAAAAATACAAT
GACTAAAGAGATCAACAAGGAAAGGACTTCATGACA back to topCoding sequence (CDS) from alignment at chr1:1368465..1370050- >NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr1:1368465..1370050- (Nannochloropsis oceanica) ATGTTGTGGCTGCGGCCAGCCTTGTTCGTGGCCTTGCTGTGCCTGGTCGT GGTGGATAGCTTCGTGGTACCTTGCCAGCGTCCGGGATTAGGCCCAACCA TGTCGTCGGCGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTG CTCAAAGCGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCC CACCTGGGCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGG AGAAAACCAGAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGC CTAGCCGCCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGC CGAGGAAGAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTG ACGCCAATCTCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTAC CTCCCCCGCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAG TCTCCAAGCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGG CGGACAATGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGC CAAGGTCTATCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGC GGAGGTGTATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCA AGGATGCCGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTT GCTCTCTACCGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGG CGAGTTCCCGACAGACAGTAAGTTGGGTGCTAGCTTTGGGAACAACAACC CGAGTTTATACAAAAAGCGAGGGAAGGAGTAA back to top
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