NO01G05100, NO01G05100 (gene) Nannochloropsis oceanica

Overview
NameNO01G05100
Unique NameNO01G05100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr1:1358902..1359357 -

Link to JBrowse

Properties
Property NameValue
DescriptionOrigin recognition complex subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1358902..1359357 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032705ORC4_C
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO01G05100 vs. NCBI_GenBank
Match: EWM29439.1 (origin recognition complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 4.300e-64
Identity = 116/150 (77.33%), Postives = 127/150 (84.67%), Query Frame = 0 
Query:    2 QAPHTTAASRGGFATLANLELLVVIAMKRLVDRGKEKCTLDMIWKEYEAFLKQEPLLPCRYSRPVLHKGLLNVLALGLACVCHRVPPGGKSYLEQCPLPPDKDFGSLDAADLGSAPLCITFYPQDLHDFLVAQEHALPTLLTRWGSSWTE 152
            Q+ H TA  +  F+ LANLELLVV AMKRLVDRG+E+CTLDMIW EYEAFLKQEPLLPCRYSRPVLHKGLLNVLA GL  +CHR+PPGGK+YLE     P KDFGSLD+ DLG+ PLCI FYPQDLHDFLVA EH+LP LLTRWGSSWTE
Sbjct:  416 QSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEHSLPALLTRWGSSWTE 565
The following BLAST results are available for this feature:
BLAST of NO01G05100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29439.14.300e-6477.33origin recognition complex subunit 4 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007749NSK007749Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05100.1NO01G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668543gene_543Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g6gene1185Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05100.1NO01G05100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05100 ID=NO01G05100|Name=NO01G05100|organism=Nannochloropsis oceanica|type=gene|length=456bp
ATGCAGGCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTT
GGCTAATTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATC
GGGGGAAAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCG
TTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTT
GCACAAAGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTC
ACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCA
CCAGACAAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCC
ATTGTGCATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGC
AGGAGCATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACG
GAGTAG
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protein sequence of NO01G05100.1

>NO01G05100.1-protein ID=NO01G05100.1-protein|Name=NO01G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MQAPHTTAASRGGFATLANLELLVVIAMKRLVDRGKEKCTLDMIWKEYEA
FLKQEPLLPCRYSRPVLHKGLLNVLALGLACVCHRVPPGGKSYLEQCPLP
PDKDFGSLDAADLGSAPLCITFYPQDLHDFLVAQEHALPTLLTRWGSSWT
E*
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Synonyms
Publications