NO01G05100.1, NO01G05100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05100.1
Unique NameNO01G05100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr1:1358902..1359357 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1358902..1359357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05100.1 vs.
Match: EWM29439.1 (origin recognition complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 4.300e-64
Identity = 116/150 (77.33%), Postives = 127/150 (84.67%), Query Frame = 0 
Query:    2 QAPHTTAASRGGFATLANLELLVVIAMKRLVDRGKEKCTLDMIWKEYEAFLKQEPLLPCRYSRPVLHKGLLNVLALGLACVCHRVPPGGKSYLEQCPLPPDKDFGSLDAADLGSAPLCITFYPQDLHDFLVAQEHALPTLLTRWGSSWTE 152
            Q+ H TA  +  F+ LANLELLVV AMKRLVDRG+E+CTLDMIW EYEAFLKQEPLLPCRYSRPVLHKGLLNVLA GL  +CHR+PPGGK+YLE     P KDFGSLD+ DLG+ PLCI FYPQDLHDFLVA EH+LP LLTRWGSSWTE
Sbjct:  416 QSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEHSLPALLTRWGSSWTE 565
The following BLAST results are available for this feature:
BLAST of NO01G05100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29439.14.300e-6477.33origin recognition complex subunit 4 [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05100NO01G05100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05100.1NO01G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05100.1.cds1NO01G05100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05100.1 ID=NO01G05100.1|Name=NO01G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGCAGGCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTT
GGCTAATTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATC
GGGGGAAAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCG
TTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTT
GCACAAAGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTC
ACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCA
CCAGACAAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCC
ATTGTGCATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGC
AGGAGCATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACG
GAGTAG
back to top

protein sequence of NO01G05100.1

>NO01G05100.1-protein ID=NO01G05100.1-protein|Name=NO01G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MQAPHTTAASRGGFATLANLELLVVIAMKRLVDRGKEKCTLDMIWKEYEA
FLKQEPLLPCRYSRPVLHKGLLNVLALGLACVCHRVPPGGKSYLEQCPLP
PDKDFGSLDAADLGSAPLCITFYPQDLHDFLVAQEHALPTLLTRWGSSWT
E*
back to top

mRNA from alignment at chr1:1358902..1359357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05100.1 ID=NO01G05100.1|Name=NO01G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=456bp|location=Sequence derived from alignment at chr1:1358902..1359357- (Nannochloropsis oceanica)
ATGCAGGCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTT
GGCTAATTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATC
GGGGGAAAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCG
TTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTT
GCACAAAGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTC
ACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCA
CCAGACAAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCC
ATTGTGCATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGC
AGGAGCATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACG
GAGTAG
back to top

Coding sequence (CDS) from alignment at chr1:1358902..1359357-

>NO01G05100.1 ID=NO01G05100.1|Name=NO01G05100.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr1:1358902..1359357- (Nannochloropsis oceanica)
ATGCAGGCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTT
GGCTAATTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATC
GGGGGAAAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCG
TTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTT
GCACAAAGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTC
ACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCA
CCAGACAAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCC
ATTGTGCATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGC
AGGAGCATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACG
GAGTAG
back to top
Synonyms
Publications