NO01G04980, NO01G04980 (gene) Nannochloropsis oceanica

Overview
NameNO01G04980
Unique NameNO01G04980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length604
Alignment locationchr1:1322078..1322681 -

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Properties
Property NameValue
DescriptionRibosomal protein s27a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1322078..1322681 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR011332Ribosomal_zn-bd
IPR002906Ribosomal_S27a
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: KIJ20902.1 (hypothetical protein PAXINDRAFT_165728 [Paxillus involutus ATCC 200175])

HSP 1 Score: 241.1 bits (614), Expect = 2.300e-60
Identity = 119/155 (76.77%), Postives = 132/155 (85.16%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQEMG 154
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKKI HKHK VK++ LK+YKV+  GK+KRLR++CP  +CGAG+ +A H DR YCGKC +TY F    G
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKHKKVKMSILKYYKVDSDGKIKRLRRECPSAECGAGIFMAFHKDRQYCGKCHLTYAFAPGSG 155
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: OMH80253.1 (Ubiquitin-40S ribosomal protein S27a [Zancudomyces culisetae] >OMH81386.1 Ubiquitin-40S ribosomal protein S27a [Zancudomyces culisetae])

HSP 1 Score: 241.1 bits (614), Expect = 2.300e-60
Identity = 121/152 (79.61%), Postives = 130/152 (85.53%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCPK--CGAGVRLAVHSDRYYCGKCTVTYKFTQ 151
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK YT PKKI HKH+ VK A LKFYKV+  G + RLR++CP   CGAGV +A H DR YCGKC +TY F +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKAYTTPKKIKHKHRKVKCAILKFYKVDGDGHITRLRRECPSDTCGAGVFMASHKDRQYCGKCHLTYVFNE 152
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: OLY84795.1 (Ubiquitin-40S ribosomal protein S27a [Smittium mucronatum])

HSP 1 Score: 240.4 bits (612), Expect = 3.900e-60
Identity = 118/153 (77.12%), Postives = 133/153 (86.93%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQE 152
            MQIFVKTLTGKTITL+VE SD+IENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK YT PKKI HKHKS+K A LK+YKV++ G + RLR++CP   CGAG  ++ H+DR YCGKC +T+ F +E
Sbjct:    1 MQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKAYTTPKKIKHKHKSIKCAVLKYYKVDEDGNISRLRRECPTKTCGAGTFMSWHTDRQYCGKCHLTFMFAEE 153
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_012181826.1 (predicted protein [Fibroporia radiculosa] >CCM02543.1 predicted protein [Fibroporia radiculosa])

HSP 1 Score: 240.0 bits (611), Expect = 5.100e-60
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFT 150
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKKI HK K VK++ LK+YKVE  GK+KRLR++CP  +CGAG+ +A H DR YCGKC +TY FT
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKRKKVKMSILKYYKVESDGKIKRLRRECPSAECGAGIFMAFHQDRQYCGKCGLTYTFT 151
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: GAW00477.1 (ubiquitin-domain-containing protein [Lentinula edodes])

HSP 1 Score: 240.0 bits (611), Expect = 5.100e-60
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFT 150
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKKI HK K VK+A LK+YKV+  GK+KRLR++CP  +CGAG+ +A H DR YCGKC +TY FT
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKRKKVKMAILKYYKVDSDGKIKRLRRECPTAECGAGIFMAFHKDRQYCGKCGLTYTFT 151
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: PCH36345.1 (ubiquitin-domain-containing protein [Wolfiporia cocos MD-104 SS10])

HSP 1 Score: 240.0 bits (611), Expect = 5.100e-60
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFT 150
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKKI HK K VK++ LK+YKVE  GK+KRLR++CP  +CGAG+ +A H DR YCGKC +TY FT
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKRKKVKMSILKYYKVESDGKIKRLRRECPSAECGAGIFMAFHEDRQYCGKCGLTYTFT 151
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: CCO31835.1 (Ubiquitin-40S ribosomal protein S27a AltName: Full=Ubiquitin carboxyl extension protein 80 [Rhizoctonia solani AG-1 IB] >CEL63024.1 Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3 [Rhizoctonia solani AG-1 IB])

HSP 1 Score: 239.6 bits (610), Expect = 6.600e-60
Identity = 119/150 (79.33%), Postives = 131/150 (87.33%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKF 149
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKKI HK K VK+A LK+YKV+  GK+KRLR++CP  +CGAG+ +A HSDR YCGKC +TY F
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKRKKVKMAILKYYKVDSDGKIKRLRRECPNSECGAGIFMAFHSDRQYCGKCGLTYTF 150
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: KIK50599.1 (hypothetical protein GYMLUDRAFT_51110 [Gymnopus luxurians FD-317 M1])

HSP 1 Score: 239.6 bits (610), Expect = 6.600e-60
Identity = 118/151 (78.15%), Postives = 131/151 (86.75%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFT 150
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y  PKK+ HK K VK+A LK+YKV+  GK+KRLR++CP  +CGAG+ +A H DR YCGKC +TY FT
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYNTPKKVKHKRKKVKMAILKYYKVDSDGKIKRLRRECPTAECGAGIFMAFHKDRQYCGKCGLTYTFT 151
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_011208987.1 (PREDICTED: ubiquitin-40S ribosomal protein S27a [Bactrocera dorsalis])

HSP 1 Score: 239.6 bits (610), Expect = 6.600e-60
Identity = 118/152 (77.63%), Postives = 134/152 (88.16%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151
            MQIFVKTLTGKTITL+VEPSDTIE+VK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG KKRKKK Y+ PKKI HK K VKLA LK+YKV++ GK+ RLR++CP   CGAGV +A H DR+YCGKC +T+ F++
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIEHVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCQLTFVFSK 152
[Close]
BLAST of NO01G04980 vs. NCBI_GenBank
Match: KZV89529.1 (ubiquitin-domain-containing protein [Exidia glandulosa HHB12029])

HSP 1 Score: 239.6 bits (610), Expect = 6.600e-60
Identity = 119/150 (79.33%), Postives = 132/150 (88.00%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKF 149
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKKI HK K VK+A LK+YKV+  GK+KRLR++CP  +CGAGV +A H DR YCGKC +TY+F
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYSTPKKIKHKRKKVKMAILKYYKVDSDGKIKRLRRECPTAECGAGVFMAFHKDRQYCGKCGLTYQF 150
The following BLAST results are available for this feature:
BLAST of NO01G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KIJ20902.12.300e-6076.77hypothetical protein PAXINDRAFT_165728 [Paxillus i... [more]
OMH80253.12.300e-6079.61Ubiquitin-40S ribosomal protein S27a [Zancudomyces... [more]
OLY84795.13.900e-6077.12Ubiquitin-40S ribosomal protein S27a [Smittium muc... [more]
XP_012181826.15.100e-6078.81predicted protein [Fibroporia radiculosa] >CCM0254... [more]
GAW00477.15.100e-6078.81ubiquitin-domain-containing protein [Lentinula edo... [more]
PCH36345.15.100e-6078.81ubiquitin-domain-containing protein [Wolfiporia co... [more]
CCO31835.16.600e-6079.33Ubiquitin-40S ribosomal protein S27a AltName: Full... [more]
KIK50599.16.600e-6078.15hypothetical protein GYMLUDRAFT_51110 [Gymnopus lu... [more]
XP_011208987.16.600e-6077.63PREDICTED: ubiquitin-40S ribosomal protein S27a [B... [more]
KZV89529.16.600e-6079.33ubiquitin-domain-containing protein [Exidia glandu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007763NSK007763Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04980.1NO01G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577583gene_526Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100305g7gene1200Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04980.1NO01G04980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04980 ID=NO01G04980|Name=NO01G04980|organism=Nannochloropsis oceanica|type=gene|length=604bp
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGT
TGAGCCCAGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGG
AAGGGATCCCCCCTGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG
GAGGACGGCCGCACGCTTTCGGACTACAACATTCAGAAGGAGTCCACATT
GCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAAGCGCAAGAAGAAGG
TATACACGAAGCCCAAGAAGATCCCTCATAAGCACAAGTCCGTCAAGCTC
GCTACTCTCAAGTTCTACAAGGTTGAGGACGGTGGGAAGGTGAAGCGATT
GAGGAAGGACTGCCCGAAGTGTGGTGCCGGTGTCCGTTTGGCCGTTCACA
GTGATCGGTACTACTGCGGCAAGTGCACTGTGACAgtaagtaatgggttt
ttgattggagaggggaggatgaagtgggggatagagcgagaggaagagaa
acacaaacctcacactgagtcaataatttgctcacttatcacttctttcc
ccttcttccaccgtacagTACAAGTTCACCCAGGAGATGGGCCAGGCTAG
TTAG
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protein sequence of NO01G04980.1

>NO01G04980.1-protein ID=NO01G04980.1-protein|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKL
ATLKFYKVEDGGKVKRLRKDCPKCGAGVRLAVHSDRYYCGKCTVTYKFTQ
EMGQAS*
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Synonyms
Publications