NO01G04980.1, NO01G04980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04980.1
Unique NameNO01G04980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr1:1322078..1322681 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1322078..1322681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04980.1 vs.
Match: EWM29431.1 (ribosomal protein s27a [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 1.900e-75
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCPKCGAGVRLAVHSDRYYCGKCTVTYKFT 150
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKI HKHKSVKLATLKFYKVEDGGKVKRLRKDCP CGAGVRLAVH+DRYYCG+CTV YKFT
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFT 149
The following BLAST results are available for this feature:
BLAST of NO01G04980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29431.11.900e-7596.64ribosomal protein s27a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04980NO01G04980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04980.1NO01G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04980.1.cds1NO01G04980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04980.1.cds2NO01G04980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04980.1 ID=NO01G04980.1|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGT
TGAGCCCAGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGG
AAGGGATCCCCCCTGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG
GAGGACGGCCGCACGCTTTCGGACTACAACATTCAGAAGGAGTCCACATT
GCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAAGCGCAAGAAGAAGG
TATACACGAAGCCCAAGAAGATCCCTCATAAGCACAAGTCCGTCAAGCTC
GCTACTCTCAAGTTCTACAAGGTTGAGGACGGTGGGAAGGTGAAGCGATT
GAGGAAGGACTGCCCGAAGTGTGGTGCCGGTGTCCGTTTGGCCGTTCACA
GTGATCGGTACTACTGCGGCAAGTGCACTGTGACATACAAGTTCACCCAG
GAGATGGGCCAGGCTAGTTAG
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protein sequence of NO01G04980.1

>NO01G04980.1-protein ID=NO01G04980.1-protein|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKL
ATLKFYKVEDGGKVKRLRKDCPKCGAGVRLAVHSDRYYCGKCTVTYKFTQ
EMGQAS*
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mRNA from alignment at chr1:1322078..1322681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04980.1 ID=NO01G04980.1|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=604bp|location=Sequence derived from alignment at chr1:1322078..1322681- (Nannochloropsis oceanica)
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGT
TGAGCCCAGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGG
AAGGGATCCCCCCTGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG
GAGGACGGCCGCACGCTTTCGGACTACAACATTCAGAAGGAGTCCACATT
GCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAAGCGCAAGAAGAAGG
TATACACGAAGCCCAAGAAGATCCCTCATAAGCACAAGTCCGTCAAGCTC
GCTACTCTCAAGTTCTACAAGGTTGAGGACGGTGGGAAGGTGAAGCGATT
GAGGAAGGACTGCCCGAAGTGTGGTGCCGGTGTCCGTTTGGCCGTTCACA
GTGATCGGTACTACTGCGGCAAGTGCACTGTGACAGTAAGTAATGGGTTT
TTGATTGGAGAGGGGAGGATGAAGTGGGGGATAGAGCGAGAGGAAGAGAA
ACACAAACCTCACACTGAGTCAATAATTTGCTCACTTATCACTTCTTTCC
CCTTCTTCCACCGTACAGTACAAGTTCACCCAGGAGATGGGCCAGGCTAG
TTAG
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Coding sequence (CDS) from alignment at chr1:1322078..1322681-

>NO01G04980.1 ID=NO01G04980.1|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr1:1322078..1322681- (Nannochloropsis oceanica)
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGT
TGAGCCCAGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGG
AAGGGATCCCCCCTGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG
GAGGACGGCCGCACGCTTTCGGACTACAACATTCAGAAGGAGTCCACATT
GCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAAGCGCAAGAAGAAGG
TATACACGAAGCCCAAGAAGATCCCTCATAAGCACAAGTCCGTCAAGCTC
GCTACTCTCAAGTTCTACAAGGTTGAGGACGGTGGGAAGGTGAAGCGATT
GAGGAAGGACTGCCCGAAGTGTGGTGCCGGTGTCCGTTTGGCCGTTCACA
GTGATCGGTACTACTGCGGCAAGTGCACTGTGACATACAAGTTCACCCAG
GAGATGGGCCAGGCTAGTTAG
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Synonyms
Publications