NO01G04980, NO01G04980 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04980 vs. NCBI_GenBank
Match: PIA15605.1 (ubiquitin and ribosomal protein S27a-like protein [Coemansia reversa NRRL 1564]) HSP 1 Score: 248.8 bits (634), Expect = 1.100e-62 Identity = 124/153 (81.05%), Postives = 137/153 (89.54%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQE 152 MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVY+ PKKIPHKHK+VKLA LK+YKV++ G+V RLR++CP CGAGV +A+H DR YCGKC +TY F E Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYSTPKKIPHKHKNVKLAILKYYKVDENGQVTRLRRECPNESCGAGVFMAMHKDRQYCGKCHLTYIFKVE 153
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_002501200.1 (predicted protein [Micromonas commoda] >ACO62458.1 predicted protein [Micromonas commoda]) HSP 1 Score: 244.6 bits (623), Expect = 2.100e-61 Identity = 123/150 (82.00%), Postives = 134/150 (89.33%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDC--PKCGAGVRLAVHSDRYYCGKCTVTYKF 149 MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKK+ H HK VKLA LK YKV+D GKV RLRK+C P+CGAGV +A H DR+YCGKC +TY + Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKVKHVHKKVKLAFLKLYKVDDAGKVTRLRKECPAPECGAGVFMANHFDRHYCGKCGLTYVY 150
BLAST of NO01G04980 vs. NCBI_GenBank
Match: ALS04101.1 (40S ribosomal protein S27a [Acartia pacifica]) HSP 1 Score: 244.2 bits (622), Expect = 2.700e-61 Identity = 122/152 (80.26%), Postives = 134/152 (88.16%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKK+ YT PKKI HKH+ VKLA LK+YKV+D GK+ RLR++CP +CGAGV +A H DR CGKC +TY F + Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKENYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLTYVFNK 152
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_005175708.1 (PREDICTED: ubiquitin-40S ribosomal protein S27a [Musca domestica] >XP_011293104.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Musca domestica] >XP_013115097.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Stomoxys calcitrans]) HSP 1 Score: 243.0 bits (619), Expect = 6.000e-61 Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKK+ HK K VKLA LK+YKV++ GK+ RLR++CP CGAGV +A H DR+YCGKC +T+ FT+ Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKMKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFTK 152
BLAST of NO01G04980 vs. NCBI_GenBank
Match: AAV84206.1 (unknown, partial [Culicoides sonorensis]) HSP 1 Score: 242.7 bits (618), Expect = 7.800e-61 Identity = 120/153 (78.43%), Postives = 135/153 (88.24%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQE 152 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKKI HK K VKLA LK+YKV++ GK+ RLR++CP CGAGV +A H +R+YCGKC +TY F+++ Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPAESCGAGVFMAAHENRHYCGKCHLTYVFSKQ 159
BLAST of NO01G04980 vs. NCBI_GenBank
Match: NP_476778.1 (ribosomal protein S27A [Drosophila melanogaster] >XP_001963119.1 uncharacterized protein Dana_GF15783 [Drosophila ananassae] >XP_001969479.1 uncharacterized protein Dere_GG10127 [Drosophila erecta] >XP_001992918.1 GH13542 [Drosophila grimshawi] >XP_002014414.1 GL18966 [Drosophila persimilis] >XP_002036509.1 GM18339 [Drosophila sechellia] >XP_002052410.1 uncharacterized protein Dvir_GJ21841, isoform A [Drosophila virilis] >XP_002075583.1 ubiquitin-40S ribosomal protein S27a [Drosophila willistoni] >XP_002089110.1 uncharacterized protein Dyak_GE18939 [Drosophila yakuba] >XP_002086031.1 RpS27A [Drosophila yakuba] >XP_002136823.1 uncharacterized protein Dpse_GA24218 [Drosophila pseudoobscura pseudoobscura] >XP_016024506.1 uncharacterized protein Dsimw501_GD23696 [Drosophila simulans] >XP_016945726.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila suzukii] >XP_017042769.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila ficusphila] >XP_016977604.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila rhopaloa] >XP_017151404.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila miranda] >XP_017025882.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila kikkawai] >XP_017004067.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila takahashii] >XP_017075495.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila eugracilis] >XP_017075496.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila eugracilis] >XP_017121027.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila elegans] >XP_017099172.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila bipectinata] >XP_016964384.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila biarmipes] >XP_017834844.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila busckii] >XP_020807284.1 ubiquitin-40S ribosomal protein S27a [Drosophila serrata] >XP_022228487.1 ubiquitin-40S ribosomal protein S27a [Drosophila obscura] >XP_023177446.1 ubiquitin-40S ribosomal protein S27a [Drosophila hydei] >P15357.2 RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=40S ribosomal protein S27a; Flags: Precursor >AAA28998.1 ubiquitin-hybrid protein precursor [Drosophila melanogaster] >AAF52941.1 ribosomal protein S27A [Drosophila melanogaster] >AAN71408.1 RE44350p [Drosophila melanogaster] >AAR09663.1 similar to Drosophila melanogaster RpS27A, partial [Drosophila yakuba] >AAR10070.1 similar to Drosophila melanogaster RpS27A, partial [Drosophila yakuba] >EDV32340.1 uncharacterized protein Dana_GF15783 [Drosophila ananassae] >EDV58538.1 uncharacterized protein Dere_GG10127 [Drosophila erecta] >EDV98843.1 GH13542 [Drosophila grimshawi] >EDW28410.1 GL18966 [Drosophila persimilis] >EDW52432.1 GM18339 [Drosophila sechellia] >EDW64565.1 uncharacterized protein Dvir_GJ21841, isoform A [Drosophila virilis] >EDW86569.1 uncharacterized protein Dwil_GK18589 [Drosophila willistoni] >EDW88822.1 uncharacterized protein Dyak_GE18939 [Drosophila yakuba] >EDW99501.1 RpS27A [Drosophila yakuba] >EDX04536.1 GD23696 [Drosophila simulans] >EDY71852.1 uncharacterized protein Dpse_GA24218 [Drosophila pseudoobscura pseudoobscura] >ACL87774.1 RpS27A-PA, partial [synthetic construct] >ACL92242.1 RpS27A-PA [synthetic construct] >ACU32638.1 SD13292p [Drosophila melanogaster] >KMY89533.1 uncharacterized protein Dsimw501_GD23696 [Drosophila simulans]) HSP 1 Score: 242.7 bits (618), Expect = 7.800e-61 Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKKI HK K VKLA LK+YKV++ GK+ RLR++CP CGAGV +A H DR+YCGKC +T+ F++ Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 152
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_002002882.1 (uncharacterized protein Dmoj_GI10618 [Drosophila mojavensis] >XP_017858017.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Drosophila arizonae] >EDW12324.1 uncharacterized protein Dmoj_GI10618 [Drosophila mojavensis]) HSP 1 Score: 242.7 bits (618), Expect = 7.800e-61 Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKKI HK K VKLA LK+YKV++ GK+ RLR++CP CGAGV +A H DR+YCGKC +T+ F++ Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGDNCGAGVFMAAHEDRHYCGKCNLTFVFSK 152
BLAST of NO01G04980 vs. NCBI_GenBank
Match: KIO29915.1 (hypothetical protein M407DRAFT_242430 [Tulasnella calospora MUT 4182]) HSP 1 Score: 241.9 bits (616), Expect = 1.300e-60 Identity = 120/150 (80.00%), Postives = 131/150 (87.33%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCPK--CGAGVRLAVHSDRYYCGKCTVTYKF 149 MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK YT PK++ HK K VK+A LK+YKVE GK+KRLR++CP CGAGV +A H DR YCGKC +TYKF Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKTYTTPKRVKHKRKKVKMAILKYYKVESDGKIKRLRRECPNADCGAGVFMAFHKDRQYCGKCGLTYKF 150
BLAST of NO01G04980 vs. NCBI_GenBank
Match: OMJ07183.1 (Ubiquitin-40S ribosomal protein S27a [Smittium culicis] >OMJ10165.1 Ubiquitin-40S ribosomal protein S27a [Smittium culicis] >OMJ24934.1 Ubiquitin-40S ribosomal protein S27a [Smittium culicis] >OMJ26881.1 Ubiquitin-40S ribosomal protein S27a [Smittium culicis]) HSP 1 Score: 241.9 bits (616), Expect = 1.300e-60 Identity = 121/152 (79.61%), Postives = 132/152 (86.84%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCPK--CGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VE SD+IENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK YT PKKI HKHK+VK A LK+YKV++ G + RLR++CP CGAGV +A H DR YCGKC +TY F Q Sbjct: 1 MQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKAYTTPKKIKHKHKNVKCAVLKYYKVDEDGNISRLRRECPSETCGAGVFMAWHKDRQYCGKCHLTYGFDQ 152
BLAST of NO01G04980 vs. NCBI_GenBank
Match: XP_023307453.1 (ubiquitin-40S ribosomal protein S27a [Lucilia cuprina]) HSP 1 Score: 241.5 bits (615), Expect = 1.700e-60 Identity = 119/152 (78.29%), Postives = 134/152 (88.16%), Query Frame = 0 Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--KCGAGVRLAVHSDRYYCGKCTVTYKFTQ 151 MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK Y+ PKK+ HK K VKLA LK+YKV++ GK+ RLR++CP CGAGV +A H DR+YCGKC +T+ F++ Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKMKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 152 The following BLAST results are available for this feature:
BLAST of NO01G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04980 ID=NO01G04980|Name=NO01G04980|organism=Nannochloropsis oceanica|type=gene|length=604bpback to top protein sequence of NO01G04980.1 >NO01G04980.1-protein ID=NO01G04980.1-protein|Name=NO01G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bpback to top Synonyms
Publications
|