NO01G04810, NO01G04810 (gene) Nannochloropsis oceanica

Overview
NameNO01G04810
Unique NameNO01G04810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2985
Alignment locationchr1:1274147..1277131 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1274147..1277131 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G04810 vs. NCBI_GenBank
Match: EWM29421.1 (hypothetical protein Naga_100042g31 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 2.900e-12
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0 
Query:    1 MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCG 48
            ME+ R TVY+LVKEWSDT GVDP+V+LM AGAATLLGLG+MASH CG
Sbjct:    1 MENFRTTVYSLVKEWSDTQGVDPNVVLMSAGAATLLGLGLMASHACG 47
The following BLAST results are available for this feature:
BLAST of NO01G04810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29421.12.900e-1278.72hypothetical protein Naga_100042g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007784NSK007784Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04810.1NO01G04810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243831gene_507Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g31gene1218Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04810.1NO01G04810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04810 ID=NO01G04810|Name=NO01G04810|organism=Nannochloropsis oceanica|type=gene|length=2985bp
AATCTAATCCTGAGTTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTT
TTATCATGGCCTTCAACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAA
TCCTCAAAAGGGGGAGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGG
AGCGATAAGGTCTTTGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCC
TCTATGGGCCGGGCAAGGCTTCACAAGGCTTCACAAGGATATACGTGTCC
TCTTTGTTTGTTCCGTGGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCA
GCAAGAGGTCTTCTTTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACT
CGGAAGACCACGGTCACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCC
CATCCACTCTCGCAAAGTCTTTACAATGCGATAGCTTGCAGATAGATCGG
GCTTATCAGTCTGGAATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGC
TTTGCTTCGCCGTCGTCATCGATTCTCAGTCAGACAGACACTCATCCTTT
TACAACAGACTTGGAGGCCTCTGACCATGCAAGCAACTTAGACCCACCAA
GAGCTCAAAAAAATCTATCGAAATTTCCAATCTCACGCGCTCCTCCTCGC
CCAACCTCGTTCTCAGCGCTTATCTCTGCAACAGAAAACACTCTTATCAA
CGTTCACCAAGCTGAGGCGTCCGGGTCCTCCGTCACAATCCCATCTCAGC
ATTTCCCCTTTGATTGAACATACTCTCACACAAAAACAGAGTCCGCCTCT
CAACAGTCACTTCACAAGAAGCCAGACGACCCACTAAATCCTACGTCTTT
GCGCGATCGACGCACCACTAGGACTCAACACGAAAGACAAGAAGCGGCAC
GCGCCCGACCGACCACGACTTAGACATGGAGGACCTCAGGGGGACGGTGT
ACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTG
ATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGgtaagtgttgaaggca
ggaggagtgggaggacacgggcagtgggcagtgagcgcggagggtaggaa
tctcggagcaccgtcgattttacctattttctttttttggcaatcgccct
ttctttcctctgcatatccatgctccagGTTTGGGCATCATGGCCTCTCA
TACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACAAGACAG
GCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGCAGCAGC
AGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGGAG
CGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAATC
CATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAGCAGCAA
TAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGAATAAGA
AGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCTCC
TCGTCGGCTGCTGCTGGTGCTGTAGCGGGGGGGTTGGCGGCGGGGGATGA
GGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATCGAGGAA
TCGTGGAAGAGgtgcgtcagaaagaagagagggatgaagggtacgagagg
gaagtaagtttagtcgtcttgtcatctatccctaaaggaacgcacgtgta
catccaactattgtcacgtcttcacccattacacgcactcacacatgtgc
atacaaacacacacacatgttgaacattaatatgttctccactttcacat
taagacacaccaccctcatacaatatattccttatcaacacgcaccaccc
tcgtacatatatacagTGGGAGACGTTCAACGACCCGGATGCAGGTTGGA
GCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGAG
GGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGAGGCATG
AGTGGAAGGTTGAAGAGGTTCATCTCTCAATTCTTTCGAGGGGCGAAGGA
GGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAGTATGACTAGATTAGT
TTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCTTGTTGTGAGATTTA
TTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCCTGTCTCTTTCTAGA
GATCCCTGTATCTCTTTTTCTGTTTTTTTTTGTGATGGTGGTGGTAGCAC
ACATACGGACGATACGGAATCTGCCAGAGGCAAAGAGGTGAACGGGGAGT
TTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTGTTGTTGAGGCGTCA
AGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTGGGTAGACAACTGTA
TGGCAAGGGGGAAGGAAAAACAGTATACATAGTCATTGCCGCAATTAATT
AGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCGAAGAAGTGGGGGAT
AGGTGGAGAGAAAAGTGACTTCCTCAAACTAAATCAAAAACAAGGAAATG
AAACCAAGTGCAGAGGAGGGAGAAAGAGGGGCGAAAGGGGGAGAAGGATC
AGGAAGAAACAAAGTCGGTTCGATTCCTTTCTATGGAAACTTGATGTCAG
CTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAGTAAGGTCCGAAACA
AGACCAAAAAGCAATACACGCCTGCAGTGGAAATGAAACGTGCAAGTGGA
TCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATCTCATTGTTAGAAGA
GAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCATTGCGGCCGC
ACATCAAAGAAATGAAGTGCTACACGGACAAGTCA
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protein sequence of NO01G04810.1

>NO01G04810.1-protein ID=NO01G04810.1-protein|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGG
RKGKRGGHKTGKKARGKKNDGNSNSSSSSKPQAPPRQQQQQQQQQQQPPK
AAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSSSED
VSKNKKKKNKKKKARAAEGATGGGPSSSSAAAGAVAGGLAAGDEAGKAAS
STFVYNNNRGIVEEWETFNDPDAGWSVVGKKKPKAQKKEGGEGEEGSGVE
AYGGEREA*
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Synonyms
Publications