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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1274147..1277131 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04810.1 vs.
Match: EWM29421.1 (hypothetical protein Naga_100042g31 [Nannochloropsis gaditana]) HSP 1 Score: 142.1 bits (357), Expect = 2.400e-30 Identity = 115/216 (53.24%), Postives = 133/216 (61.57%), Query Frame = 0
Query: 1 MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGGRKGKRGGHKTGKKARGKKNDG-NSNSSSSSKPQAPPRQQQQQQQQQQQPPKAAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSSSEDVSKNKKKKNK-KKKARAAEGATGGGPSSSSAAAGAVAGGLAAGDEAGKAASSTFVYNNNRGIVEE 215
ME+ R TVY+LVKEWSDT GVDP+V+LM AGAATLLGLG+MASH CGG KRGGHK KK + KK +G N + +SKP PPR Q QQ P A S G KK++ PTP + P A A NG + +V KNKKKKNK KKK EGATGGG SSS A ++ G A G EAG A+STFVYNN+RG VEE
Sbjct: 1 MENFRTTVYSLVKEWSDTQGVDPNVVLMSAGAATLLGLGLMASHACGGSNGSKKRGGHKH-KKGKSKKTEGMGGNGAGASKPLPPPRHQAQQ-------PSKAGATKSVQGKAKKQS----VPTPASGAPAAAMAAARNGV---HPDPGGEVGKNKKKKNKHKKKGALEEGATGGGNSSSQAKEPSMGGRQAQG-EAG-LANSTFVYNNDRGTVEE 199
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp AATCTAATCCTGAGTTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTT TTATCATGGCCTTCAACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAA TCCTCAAAAGGGGGAGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGG AGCGATAAGGTCTTTGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCC TCTATGGGCCGGGCAAGGCTTCACAAGGCTTCACAAGGATATACGTGTCC TCTTTGTTTGTTCCGTGGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCA GCAAGAGGTCTTCTTTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACT CGGAAGACCACGGTCACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCC CATCCACTCTCGCAAAGTCTTTACAATGCGATAGCTTGCAGATAGATCGG GCTTATCAGTCTGGAATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGC TTTGCTTCGCCGTCGTCATCGATTCTCAGTCAGACAGACACTCATCCTTT TACAACAGACTTGGAGGCCTCTGACCATGCAAGCAACTTAGACCCACCAA GAGCTCAAAAAAATCTATCGAAATTTCCAATCTCACGCGCTCCTCCTCGC CCAACCTCGTTCTCAGCGCTTATCTCTGCAACAGAAAACACTCTTATCAA CGTTCACCAAGCTGAGGCGTCCGGGTCCTCCGTCACAATCCCATCTCAGC ATTTCCCCTTTGATTGAACATACTCTCACACAAAAACAGAGTCCGCCTCT CAACAGTCACTTCACAAGAAGCCAGACGACCCACTAAATCCTACGTCTTT GCGCGATCGACGCACCACTAGGACTCAACACGAAAGACAAGAAGCGGCAC GCGCCCGACCGACCACGACTTAGACATGGAGGACCTCAGGGGGACGGTGT ACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTG ATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGGTTTGGGCATCATGGC CTCTCATACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACA AGACAGGCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGC AGCAGCAGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGG CAGGAGCGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAA GCAATCCATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAG CAGCAATAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGA ATAAGAAGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCT TCCTCCTCGTCGGCTGCTGCTGGTGCTGTAGCGGGGGGGTTGGCGGCGGG GGATGAGGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATC GAGGAATCGTGGAAGAGTGGGAGACGTTCAACGACCCGGATGCAGGTTGG AGCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGA GGGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGAGGCAT GAGTGGAAGGTTGAAGAGGTTCATCTCTCAATTCTTTCGAGGGGCGAAGG AGGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAGTATGACTAGATTAG TTTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCTTGTTGTGAGATTT ATTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCCTGTCTCTTTCTAG AGATCCCTGTATCTCTTTTTCTGTTTTTTTTTGTGATGGTGGTGGTAGCA CACATACGGACGATACGGAATCTGCCAGAGGCAAAGAGGTGAACGGGGAG TTTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTGTTGTTGAGGCGTC AAGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTGGGTAGACAACTGT ATGGCAAGGGGGAAGGAAAAACAGTATACATAGTCATTGCCGCAATTAAT TAGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCGAAGAAGTGGGGGA TAGGTGGAGAGAAAAGTGACTTCCTCAAACTAAATCAAAAACAAGGAAAT GAAACCAAGTGCAGAGGAGGGAGAAAGAGGGGCGAAAGGGGGAGAAGGAT CAGGAAGAAACAAAGTCGGTTCGATTCCTTTCTATGGAAACTTGATGTCA GCTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAGTAAGGTCCGAAAC AAGACCAAAAAGCAATACACGCCTGCAGTGGAAATGAAACGTGCAAGTGG ATCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATCTCATTGTTAGAAG AGAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCATTGCGGCCG CACATCAAAGAAATGAAGTGCTACACGGACAAGTCA back to topprotein sequence of NO01G04810.1 >NO01G04810.1-protein ID=NO01G04810.1-protein|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGG RKGKRGGHKTGKKARGKKNDGNSNSSSSSKPQAPPRQQQQQQQQQQQPPK AAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSSSED VSKNKKKKNKKKKARAAEGATGGGPSSSSAAAGAVAGGLAAGDEAGKAAS STFVYNNNRGIVEEWETFNDPDAGWSVVGKKKPKAQKKEGGEGEEGSGVE AYGGEREA* back to topmRNA from alignment at chr1:1274147..1277131- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp|location=Sequence derived from alignment at chr1:1274147..1277131- (Nannochloropsis oceanica) AATCTAATCCTGAGTTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTT
TTATCATGGCCTTCAACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAA
TCCTCAAAAGGGGGAGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGG
AGCGATAAGGTCTTTGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCC
TCTATGGGCCGGGCAAGGCTTCACAAGGCTTCACAAGGATATACGTGTCC
TCTTTGTTTGTTCCGTGGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCA
GCAAGAGGTCTTCTTTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACT
CGGAAGACCACGGTCACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCC
CATCCACTCTCGCAAAGTCTTTACAATGCGATAGCTTGCAGATAGATCGG
GCTTATCAGTCTGGAATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGC
TTTGCTTCGCCGTCGTCATCGATTCTCAGTCAGACAGACACTCATCCTTT
TACAACAGACTTGGAGGCCTCTGACCATGCAAGCAACTTAGACCCACCAA
GAGCTCAAAAAAATCTATCGAAATTTCCAATCTCACGCGCTCCTCCTCGC
CCAACCTCGTTCTCAGCGCTTATCTCTGCAACAGAAAACACTCTTATCAA
CGTTCACCAAGCTGAGGCGTCCGGGTCCTCCGTCACAATCCCATCTCAGC
ATTTCCCCTTTGATTGAACATACTCTCACACAAAAACAGAGTCCGCCTCT
CAACAGTCACTTCACAAGAAGCCAGACGACCCACTAAATCCTACGTCTTT
GCGCGATCGACGCACCACTAGGACTCAACACGAAAGACAAGAAGCGGCAC
GCGCCCGACCGACCACGACTTAGACATGGAGGACCTCAGGGGGACGGTGT
ACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTG
ATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGGTAAGTGTTGAAGGCA
GGAGGAGTGGGAGGACACGGGCAGTGGGCAGTGAGCGCGGAGGGTAGGAA
TCTCGGAGCACCGTCGATTTTACCTATTTTCTTTTTTTGGCAATCGCCCT
TTCTTTCCTCTGCATATCCATGCTCCAGGTTTGGGCATCATGGCCTCTCA
TACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACAAGACAG
GCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGCAGCAGC
AGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGGAG
CGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAATC
CATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAGCAGCAA
TAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGAATAAGA
AGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCTCC
TCGTCGGCTGCTGCTGGTGCTGTAGCGGGGGGGTTGGCGGCGGGGGATGA
GGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATCGAGGAA
TCGTGGAAGAGGTGCGTCAGAAAGAAGAGAGGGATGAAGGGTACGAGAGG
GAAGTAAGTTTAGTCGTCTTGTCATCTATCCCTAAAGGAACGCACGTGTA
CATCCAACTATTGTCACGTCTTCACCCATTACACGCACTCACACATGTGC
ATACAAACACACACACATGTTGAACATTAATATGTTCTCCACTTTCACAT
TAAGACACACCACCCTCATACAATATATTCCTTATCAACACGCACCACCC
TCGTACATATATACAGTGGGAGACGTTCAACGACCCGGATGCAGGTTGGA
GCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGAG
GGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGAGGCATG
AGTGGAAGGTTGAAGAGGTTCATCTCTCAATTCTTTCGAGGGGCGAAGGA
GGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAGTATGACTAGATTAGT
TTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCTTGTTGTGAGATTTA
TTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCCTGTCTCTTTCTAGA
GATCCCTGTATCTCTTTTTCTGTTTTTTTTTGTGATGGTGGTGGTAGCAC
ACATACGGACGATACGGAATCTGCCAGAGGCAAAGAGGTGAACGGGGAGT
TTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTGTTGTTGAGGCGTCA
AGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTGGGTAGACAACTGTA
TGGCAAGGGGGAAGGAAAAACAGTATACATAGTCATTGCCGCAATTAATT
AGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCGAAGAAGTGGGGGAT
AGGTGGAGAGAAAAGTGACTTCCTCAAACTAAATCAAAAACAAGGAAATG
AAACCAAGTGCAGAGGAGGGAGAAAGAGGGGCGAAAGGGGGAGAAGGATC
AGGAAGAAACAAAGTCGGTTCGATTCCTTTCTATGGAAACTTGATGTCAG
CTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAGTAAGGTCCGAAACA
AGACCAAAAAGCAATACACGCCTGCAGTGGAAATGAAACGTGCAAGTGGA
TCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATCTCATTGTTAGAAGA
GAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCATTGCGGCCGC
ACATCAAAGAAATGAAGTGCTACACGGACAAGTCA back to topCoding sequence (CDS) from alignment at chr1:1274147..1277131- >NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr1:1274147..1277131- (Nannochloropsis oceanica) ATGGAGGACCTCAGGGGGACGGTGTACACATTGGTGAAGGAGTGGAGCGA TACGCATGGCGTGGACCCACACGTGATTTTGATGGGGGCAGGAGCAGCCA CCCTCCTAGGTTTGGGCATCATGGCCTCTCATACCTGCGGCGGGGGCGGA CGAAAGGGGAAGCGCGGCGGGCACAAGACAGGCAAGAAGGCTAGGGGGAA GAAAAACGACGGTAACAGCAACAGCAGCAGCAGCAGCAAGCCCCAGGCAC CTCCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGAAA GCAGCACCGGTGGTGGCTTCGGCGGCAGGAGCGAAGAAGAAAAGGGCAGG AGGAGGTGGGCAGCCGACCCCCGAAGCAATCCATCCCCCCGCTCATAAAG CGATGCCTGTCAACGGCACGAGTAGCAGCAATAGCAGCAGCAGTGAGGAT GTGAGTAAGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGAGAGCAGC GGAGGGAGCGACAGGGGGAGGGCCTTCCTCCTCGTCGGCTGCTGCTGGTG CTGTAGCGGGGGGGTTGGCGGCGGGGGATGAGGCGGGAAAGGCGGCTAGC TCGACGTTTGTGTACAACAACAATCGAGGAATCGTGGAAGAGTGGGAGAC GTTCAACGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAAAAAGCCGA AGGCCCAGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGGGTGTGGAG GCATACGGTGGAGAAAGGGAGGCATGA back to top
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