NO01G04770, NO01G04770 (gene) Nannochloropsis oceanica

Overview
NameNO01G04770
Unique NameNO01G04770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr1:1260271..1260945 +

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Properties
Property NameValue
DescriptionAnaphase-promoting complex subunit 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1260271..1260945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0031145anaphase-promoting complex-dependent catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR016901APC10/Doc1
IPR004939APC_su10/DOC_dom
Homology
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_002503450.1 (predicted protein [Micromonas commoda] >ACO64708.1 predicted protein [Micromonas commoda])

HSP 1 Score: 215.7 bits (548), Expect = 1.500e-52
Identity = 107/200 (53.50%), Postives = 137/200 (68.50%), Query Frame = 0
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            ++ EIG  AVWS+++AKPGNGVE +RD+++DTYWQSDGAQPHL+NVQF KK+ + E+ +Y DY LDESYTP KIS++AG +FHDL EI+ V+L EP GW +V L        + PG+L G D     G  LR +FLQI++++ HQNGRDTHVRQ KIYGPR+   A  GQ                +FTT E  QF+TVR
Sbjct:   22 DVSEIGKLAVWSVTSAKPGNGVELLRDNSLDTYWQSDGAQPHLVNVQFQKKVRVRELCIYADYRLDESYTPNKISVRAGNSFHDLREIKTVDLDEPSGWTRVSL----VKDENEPGALNGGD-----GECLRTYFLQIAVLSNHQNGRDTHVRQVKIYGPRTSPEAMIGQGM--------------QFTTPEYGQFATVR 198          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_009523210.1 (hypothetical protein PHYSODRAFT_245966 [Phytophthora sojae] >EGZ20493.1 hypothetical protein PHYSODRAFT_245966 [Phytophthora sojae])

HSP 1 Score: 213.4 bits (542), Expect = 7.300e-52
Identity = 105/199 (52.76%), Postives = 135/199 (67.84%), Query Frame = 0
Query:   26 LREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            +RE+G +AVWSLS+AKPGNGV+Q+RD+NMDTYWQSDG QPHLIN+QF +K  + EVAL+LDY LDESYTPKKI++++G+T HDL EI V ++ EP GW+ +PL +     P                  LR FFLQI I+AMHQNGRDTH+RQ KIY PR        ++ V +D       T+PE TT + A +S +R
Sbjct:   10 MREVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLINIQFSRKTAVKEVALHLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWISIPLHSDEEQVP------------------LRTFFLQIVILAMHQNGRDTHIRQVKIYAPR--------EANV-LD------WTIPEATTPQFAAYSCIR 175          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_009833572.1 (hypothetical protein H257_09146 [Aphanomyces astaci] >ETV76659.1 hypothetical protein H257_09146 [Aphanomyces astaci])

HSP 1 Score: 211.1 bits (536), Expect = 3.600e-51
Identity = 98/163 (60.12%), Postives = 117/163 (71.78%), Query Frame = 0
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSP 188
            E REIG EAVW+LS+AK GNGV+Q+RDDN+DTYWQSDGAQPHLIN+QFHKK T+ EVALYLDY LDESYTPK I+++ GTTFHDLV++      EP GWV +PL            S    D        LR FFLQ+++  MHQNGRDTH+RQ K++ PR P
Sbjct:    2 EKREIGDEAVWTLSSAKQGNGVQQLRDDNLDTYWQSDGAQPHLINIQFHKKTTVQEVALYLDYKLDESYTPKTITVRTGTTFHDLVDVLTHTTTEPTGWVTIPL------------SCQPTDLSMLSEQPLRTFFLQLAVTGMHQNGRDTHIRQVKVFAPRQP 152          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_005651199.1 (anaphase-promoting complex, subunit 10 [Coccomyxa subellipsoidea C-169] >EIE26655.1 anaphase-promoting complex, subunit 10 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 206.1 bits (523), Expect = 1.200e-49
Identity = 102/205 (49.76%), Postives = 138/205 (67.32%), Query Frame = 0
Query:   20 LISTKELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            +  ++  REIG  AVW++++AKPGNGVE +RD   DTYWQSDG+QPHL+N+QF KK+ + E+A+ LDY LDESYTP KIS++AGT+ HDL EI+VV L EP GWVKVPL+ PY+                     L+A+ +Q++I++ HQNGRDTHVRQ K++GPR  +    GQ       ++G       FTT EL+QF+T+R
Sbjct:    1 MTDSRSNREIGKLAVWTVTSAKPGNGVELLRDGREDTYWQSDGSQPHLVNIQFQKKVRLQELAINLDYKLDESYTPNKISVRAGTSVHDLKEIRVVELNEPIGWVKVPLQPPYS------------------SDNLKAYCMQLAILSNHQNGRDTHVRQIKVFGPRHDVLQPLGQ-------EIG-------FTTVELSQFATIR 173          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_024576350.1 (anaphase-promoting complex subunit 10 [Plasmopara halstedii] >CEG39981.1 anaphase-promoting complex subunit 10 [Plasmopara halstedii])

HSP 1 Score: 204.1 bits (518), Expect = 4.400e-49
Identity = 106/198 (53.54%), Postives = 131/198 (66.16%), Query Frame = 0
Query:   27 REIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            RE+G  AVWSLS+AKPGNGV+Q+RD+N DTYWQSDG QPH+I++QF +KMTI EVALY+DY LDESYTPKKI + +G+T HDL EI V +  EP GWV +PL     +  DG           S+   LR FFLQI I+AMHQNGRDTH+RQ KIY PR             +D       ++ EFTT + A +S +R
Sbjct:    6 REVGDGAVWSLSSAKPGNGVDQLRDNNTDTYWQSDGMQPHVISIQFPRKMTIKEVALYMDYKLDESYTPKKIVILSGSTVHDLKEINVQHFAEPDGWVFIPL-----HVMDG-----------SKQAPLRTFFLQIVILAMHQNGRDTHIRQVKIYAPRETQM---------LD------WSISEFTTPQFAAYSCIR 172          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_003055678.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH60930.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48
Identity = 105/199 (52.76%), Postives = 130/199 (65.33%), Query Frame = 0
Query:   28 EIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGG--LLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            EIG  AVWS+++AKPGNGVE +RDD +DTYWQSDGAQPHL+NVQF KK+ + E+ALY  Y+LDESYTP KIS++AG +FHDL EI+VV+L+EP GW+ V L                            LRAFFLQI++++ HQNGRDTHVRQ KI+GPR+   A  G+   GI            F T E  QF+TVR
Sbjct:   32 EIGKLAVWSVTSAKPGNGVELLRDDCLDTYWQSDGAQPHLVNVQFQKKVRLRELALYAKYALDESYTPSKISIRAGNSFHDLREIKVVDLEEPGGWMHVSLAKXXXXXXXXXXXXXXXXXXXXXXXXECLRAFFLQIAVLSNHQNGRDTHVRQMKIFGPRTDPTALMGR---GI-----------SFATPEFGQFATVR 216          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: PSC73240.1 (Anaphase-promoting complex subunit 10 [Micractinium conductrix])

HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48
Identity = 105/207 (50.72%), Postives = 129/207 (62.32%), Query Frame = 0
Query:   18 AALISTKELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            AAL      RE+G  AVWS+++AKPGNGVE +RD   DTYWQSDGAQPHL+NVQF KK+ + EVA+Y DY LDESYTP KIS++ G TF DL EIQ V L EPQGWV +PL       P+G                L+ F LQ++++A HQNGRDTH+RQ +++GPRS LA   GQ                 F + +LA FS VR
Sbjct:    6 AALQPDTVSREMGQLAVWSVTSAKPGNGVELLRDGREDTYWQSDGAQPHLVNVQFQKKVYLSEVAIYADYKLDESYTPTKISVRVGNTFADLREIQTVELTEPQGWVVIPLT------PEG-----------QPEAFLKGFMLQVAVLANHQNGRDTHIRQVRVFGPRSDLACPIGQEAT--------------FASPQLAAFSCVR 181          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: CCA16431.1 (anaphasepromoting complex subunit 10 putative [Albugo laibachii Nc14])

HSP 1 Score: 201.4 bits (511), Expect = 2.900e-48
Identity = 95/164 (57.93%), Postives = 118/164 (71.95%), Query Frame = 0
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPL---RNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPR 186
            E REIG+EA WSLS+AKPGNG++Q+RDD +DT+WQSDG QPH IN++F+KK  I E+ALYL Y LDESYTPKKIS+++G T  +LVEI    L EP GW+++PL    N         G L    T   Q   LR FF+QI+++AMHQNGRDTH+RQ KIY PR
Sbjct:   13 EGREIGNEAFWSLSSAKPGNGIDQLRDDTIDTFWQSDGTQPHCINIEFNKKTLIQEIALYLYYKLDESYTPKKISIRSGNTVQELVEIHAKELVEPNGWIRIPLYTIENGEVLCAKNFGQLADRATLNLQHRPLRTFFIQIAVLAMHQNGRDTHIRQVKIYSPR 176          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: GAQ80988.1 (Anaphase-promoting complex subunit 10 [Klebsormidium nitens])

HSP 1 Score: 201.4 bits (511), Expect = 2.900e-48
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 0
Query:   24 KELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            +E REIG  AVW++++AKPGNGVE +RDDN++TYWQSDGAQPHL+N+QF KK+ + ++A+Y+D+ LDESYTP KIS++ G +FHDL EI+ V+L+EP GW+ + LR                   +S    LRA+ +Q++++A HQNGRDTH+RQ KIYGPR+ +    G                  FT+ E   ++T+R
Sbjct:   16 EEKREIGKLAVWTVTSAKPGNGVELMRDDNLETYWQSDGAQPHLVNIQFQKKVKLQQIAIYIDFKLDESYTPSKISVRLGNSFHDLREIRQVDLEEPVGWIYISLR-----------------PNDSSSVFLRAYLVQVAVLASHQNGRDTHMRQVKIYGPRTDVVRAMGHPM--------------RFTSEEFNMYATIR 185          
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_008872105.1 (hypothetical protein H310_08211 [Aphanomyces invadans] >ETV99549.1 hypothetical protein H310_08211 [Aphanomyces invadans])

HSP 1 Score: 200.7 bits (509), Expect = 4.900e-48
Identity = 92/165 (55.76%), Postives = 115/165 (69.70%), Query Frame = 0
Query:   21 ISTKELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPR 186
            + + E REIG EAVW+LS+AK GNGV+Q+RD+N+DTYWQSDG QPHLIN+QFHKK T+ EVALYLDY LDESYTPK ++++AGTT  DLV++    + EP GW  +PL  P A                     LR F LQ++I  MHQNGRDTH+RQ K++ PR
Sbjct:    1 MESMEKREIGDEAVWTLSSAKQGNGVQQLRDENLDTYWQSDGTQPHLINIQFHKKTTVQEVALYLDYKLDESYTPKTLTVRAGTTCQDLVDVLTYTIAEPSGWTTIPLTQPAA-------------RSHLSEKPLRTFLLQLAITGMHQNGRDTHIRQVKVFAPR 152          
The following BLAST results are available for this feature:
BLAST of NO01G04770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002503450.11.500e-5253.50predicted protein [Micromonas commoda] >ACO64708.1... [more]
XP_009523210.17.300e-5252.76hypothetical protein PHYSODRAFT_245966 [Phytophtho... [more]
XP_009833572.13.600e-5160.12hypothetical protein H257_09146 [Aphanomyces astac... [more]
XP_005651199.11.200e-4949.76anaphase-promoting complex, subunit 10 [Coccomyxa ... [more]
XP_024576350.14.400e-4953.54anaphase-promoting complex subunit 10 [Plasmopara ... [more]
XP_003055678.11.300e-4852.76predicted protein [Micromonas pusilla CCMP1545] >E... [more]
PSC73240.11.300e-4850.72Anaphase-promoting complex subunit 10 [Micractiniu... [more]
CCA16431.12.900e-4857.93anaphasepromoting complex subunit 10 putative [Alb... [more]
GAQ80988.12.900e-4846.27Anaphase-promoting complex subunit 10 [Klebsormidi... [more]
XP_008872105.14.900e-4855.76hypothetical protein H310_08211 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007788NSK007788Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04770.1NO01G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577502gene_502Nannochloropsis oceanica (N. oceanica CCMP1779)gene
APC10gene1222Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04770.1NO01G04770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04770 ID=NO01G04770|Name=NO01G04770|organism=Nannochloropsis oceanica|type=gene|length=675bp
ATGGATGCTGCATCGACAGCTGAGGCTAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCAAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATAGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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protein sequence of NO01G04770.1

>NO01G04770.1-protein ID=NO01G04770.1-protein|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDAASTAEASTSTSTTTAALISTKELREIGHEAVWSLSTAKPGNGVEQIR
DDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISM
KAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGES
QGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGID
RDLGGVCTVPEFTTSELAQFSTVR*
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Synonyms
Publications