NO01G04770.1, NO01G04770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04770.1
Unique NameNO01G04770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr1:1260271..1260945 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1260271..1260945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04770.1 vs.
Match: EWM29413.1 (Anaphase-promoting complex, subunit 10/DOC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 8.300e-88
Identity = 164/214 (76.64%), Postives = 181/214 (84.58%), Query Frame = 0 
Query:   11 TSTSTTTAALISTKELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            TS++ TT+   S KELR+IGHEAVWSLSTAKPGNGVEQIRDD+MDTYWQSDGAQPHLINVQFHKKMTILEV+LYLDYSLDESYTPKKIS+KAGTTFHDLVEIQ VNLKEPQGWVKVP+RNPYA  P G  ++     G+  GG+LRAFFLQISIIAMHQNGRDTHVRQ K+YGPR   A+FC  SRV     L    T+PEFT++ELAQFSTVR
Sbjct:    8 TSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
The following BLAST results are available for this feature:
BLAST of NO01G04770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29413.18.300e-8876.64Anaphase-promoting complex, subunit 10/DOC domain ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04770NO01G04770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04770.1NO01G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04770.1.cds1NO01G04770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04770.1 ID=NO01G04770.1|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGGATGCTGCATCGACAGCTGAGGCTAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCAAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATAGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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protein sequence of NO01G04770.1

>NO01G04770.1-protein ID=NO01G04770.1-protein|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDAASTAEASTSTSTTTAALISTKELREIGHEAVWSLSTAKPGNGVEQIR
DDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISM
KAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGES
QGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGID
RDLGGVCTVPEFTTSELAQFSTVR*
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mRNA from alignment at chr1:1260271..1260945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04770.1 ID=NO01G04770.1|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at chr1:1260271..1260945+ (Nannochloropsis oceanica)
ATGGATGCTGCATCGACAGCTGAGGCTAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCAAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATAGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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Coding sequence (CDS) from alignment at chr1:1260271..1260945+

>NO01G04770.1 ID=NO01G04770.1|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr1:1260271..1260945+ (Nannochloropsis oceanica)
ATGGATGCTGCATCGACAGCTGAGGCTAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCAAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATAGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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Synonyms
Publications