NO01G04770, NO01G04770 (gene) Nannochloropsis oceanica

Overview
NameNO01G04770
Unique NameNO01G04770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr1:1260271..1260945 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnaphase-promoting complex subunit 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1260271..1260945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0031145anaphase-promoting complex-dependent catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR016901APC10/Doc1
IPR004939APC_su10/DOC_dom
Homology
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: EWM29413.1 (Anaphase-promoting complex, subunit 10/DOC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 2.300e-82
Identity = 153/203 (75.37%), Postives = 167/203 (82.27%), Query Frame = 0 
Query:   22 STKELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            S KELR+IGHEAVWSLSTAKPGNG       +MDTYWQSDGAQPHLINVQFHKKMTILEV+LYLDYSLDESYTPKKIS+KAGTTFHDLVEIQ VNLKEPQGWVKVP+RNPYA  P G  ++     G+  GG+LRAFFLQISIIAMHQNGRDTHVRQ K+YGPR   A+FC  SRV     L    T+PEFT++ELAQFSTVR
Sbjct:   19 SAKELRDIGHEAVWSLSTAKPGNGXXXXXXXDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_009033514.1 (hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens] >EGB12491.1 hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens])

HSP 1 Score: 228.4 bits (581), Expect = 2.200e-56
Identity = 115/206 (55.83%), Postives = 137/206 (66.50%), Query Frame = 0 
Query:   27 REIGHEAVWSLSTAKPGNGVEQI--------RDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            REIG EAVWSLSTAKPGNGVEQI        RD+N +TYWQSDG QPHLIN+QFHKKM+I E+A YLDY LDESYTPKK+S++AGTTFHDLVE++VV+L EP GWV V L                       G  LRAFFLQ+ +++MHQNGRDTHVRQAKI+GPR+P+    G+                 FT+  L QF+ +R
Sbjct:   21 REIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDESYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVAL-------------------SHGDGKALRAFFLQVCVVSMHQNGRDTHVRQAKIFGPRTPIDVCAGKH-------------AARFTSVALTQFAVLR 194
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_008614534.1 (anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20] >EQC32132.1 anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20])

HSP 1 Score: 224.2 bits (570), Expect = 4.100e-55
Identity = 110/200 (55.00%), Postives = 138/200 (69.00%), Query Frame = 0 
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            E REIG EAVWSLSTAKPGNGV Q+RDDN+DTYWQSDG QPHLIN+QFHKKMT+ EVALYLDY LDESYTP+KI+++AG+TFHDLV+I+   + EP GW  +PL+             +G  + E     LR FFLQI+++ MHQNGRDTH+RQ KIY PR  +AA  G               +PE ++   + F+++R
Sbjct:    2 EKREIGDEAVWSLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQVLL--------ALGQPSREKP---LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPR--VAASIG-------------AQIPEPSSVAFSSFASIR 175
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_012200382.1 (hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65] >KDO28774.1 hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 223.4 bits (568), Expect = 7.100e-55
Identity = 109/200 (54.50%), Postives = 138/200 (69.00%), Query Frame = 0 
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            E REIG EAVW+LSTAKPGNGV Q+RDDN+DTYWQSDG QPHLIN+QFHKKMT+ EVALYLDY LDESYTP+KI+++AG+TFHDLV+I+   + EP GW  +PL+             +G  + E     LR FFLQI+++ MHQNGRDTH+RQ KIY PR  +AA  G               +PE ++   + F+++R
Sbjct:    2 EKREIGDEAVWTLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQALL--------ALGQPSREKP---LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPR--VAASIG-------------AQIPEPSSVAFSSFASIR 175
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: CBJ26599.1 (Putative subunit of the Anaphase Promoting Complex [Ectocarpus siliculosus])

HSP 1 Score: 222.6 bits (566), Expect = 1.200e-54
Identity = 100/159 (62.89%), Postives = 127/159 (79.87%), Query Frame = 0 
Query:   27 REIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPR 186
            REIG EAVWSLS+AKPGNGV+Q+RDD+ DTYWQSDG QPHLIN+QFHKKMT++E+A +LD+S DESYTPKK+S++AG++FHDLVE+ V  L EP GWV+VPL   +A G              ++G +LRA F+QI ++AMHQNGRDTH+RQ K++GPR
Sbjct:   30 REIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPL---FAPGXXXXXXXXXXXXXXAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPR 185
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: OQR82974.1 (anaphase-promoting complex subunit 10 [Achlya hypogyna])

HSP 1 Score: 222.6 bits (566), Expect = 1.200e-54
Identity = 107/200 (53.50%), Postives = 138/200 (69.00%), Query Frame = 0 
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            E REIG EAVWSLSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QF KKMT+ EVALYLDY LDESYTP+KIS++AGTT+HDL EI+   + EP GW+ + L +P             + T  ++   LR FFLQI+++ MHQNGRDTH+RQ K+Y PR         +  G++        +PE ++ E + F+T+R
Sbjct:    2 EKREIGDEAVWSLSTAKPGNGVHQLRDDSIDTYWQSDGVQPHLINIQFPKKMTVQEVALYLDYKLDESYTPRKISIRAGTTYHDLTEIKTQTIVEPAGWITIQLTHP-----------APLLTDSNRDKPLRTFFLQIAVMGMHQNGRDTHIRQVKVYAPRQ-------ATHFGLE--------IPEPSSIEFSSFATIR 175
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: OQS04911.1 (anaphase-promoting complex subunit 10 [Thraustotheca clavata])

HSP 1 Score: 221.5 bits (563), Expect = 2.700e-54
Identity = 108/201 (53.73%), Postives = 140/201 (69.65%), Query Frame = 0 
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRV-GIDRDLGGVCTVPEFTTSELAQFSTVR 225
            ELRE+G EAVWSLSTAKPGNGV Q+RDDN+DTYWQSDG QPHLIN+QF KKMT+ E+A+YLD+ LDESYTP+KIS++AG+TFHDLVEI+   + EP GW+ + L  P       P  +    + +     LR FFLQI+++ MHQNGRDTH+RQ K++ PR        QS + G D        +PE ++ E + F+T+R
Sbjct:    2 ELREVGDEAVWSLSTAKPGNGVYQLRDDNLDTYWQSDGVQPHLINIQFAKKMTVQEIAMYLDHKLDESYTPRKISIRAGSTFHDLVEIKTQTIVEPMGWITIQLMQP-------PSHIANAGSEKP----LRTFFLQIAVMGMHQNGRDTHIRQVKVFAPR--------QSHLFGAD--------IPEPSSIEFSSFATIR 175
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: OWY94262.1 (Anaphase-promoting complex subunit 10 [Phytophthora megakarya])

HSP 1 Score: 218.4 bits (555), Expect = 2.300e-53
Identity = 109/200 (54.50%), Postives = 138/200 (69.00%), Query Frame = 0 
Query:   25 ELREIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            + RE+G +AVWSLS+AKPGNGV+Q+RD+NMDTYWQSDG QPHL+N+QF +KM + EVALYLDY LDESYTPKKI++++G+T HDL EI V ++ EP GWV +PL                 D G S+   LR FFLQI I+AMHQNGRDTH+RQ KIY PR        ++ V +D       +VPE TT + A +S +R
Sbjct:    3 DAREVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLVNIQFSRKMAVKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWVSIPLHT---------------DDG-SEPAALRTFFLQIVILAMHQNGRDTHIRQVKIYAPR--------EANV-LD------WSVPEATTPQFAAYSCIR 171
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_008902991.1 (anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica INRA-310] >ETI51047.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica P1569] >ETK90935.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica] >ETL44335.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica] >ETL97510.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica] >ETM50671.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica] >ETN12076.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica INRA-310] >ETO79796.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica P1976] >ETP20830.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica CJ01A1] >ETP48755.1 anaphase-promoting complex subunit 10, variant 1 [Phytophthora parasitica P10297] >KUF91027.1 N-ethylmaleimide reductase [Phytophthora nicotianae] >KUF96158.1 Anaphase-promoting complex subunit 10 [Phytophthora nicotianae])

HSP 1 Score: 217.2 bits (552), Expect = 5.100e-53
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 0 
Query:   27 REIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            RE+G +A+WSLS+AKPGNGV+Q+RD+NMDTYWQSDG QPHLIN+QF +KM I EVALYLDY LDESYTPKKI++++G+T HDL EI V ++ EP GW+ +PL                 D G  Q   LR FFLQ+ I+AMHQNGRDTH+RQ KIY PR        +S V +D       ++PE TT + A +S +R
Sbjct:   12 REVGDDAMWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLINIQFSRKMAIKEVALYLDYKLDESYTPKKIAVRSGSTVHDLKEIHVQHIAEPNGWISIPLHT---------------DEGSEQAP-LRTFFLQVVILAMHQNGRDTHIRQVKIYSPR--------ESNV-LD------WSIPEATTLQFAAYSCIR 178
[Close]
BLAST of NO01G04770 vs. NCBI_GenBank
Match: XP_002897129.1 (anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4] >EEY65500.1 anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4])

HSP 1 Score: 217.2 bits (552), Expect = 5.100e-53
Identity = 107/198 (54.04%), Postives = 135/198 (68.18%), Query Frame = 0 
Query:   27 REIGHEAVWSLSTAKPGNGVEQIRDDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISMKAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGESQGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGIDRDLGGVCTVPEFTTSELAQFSTVR 225
            RE+G +A+WSLS+AKPGNGV+Q+RDDNMDTYWQSDG QPHLIN+QF +KM I EVALYLDY LDESYTPKKI++++G+T HDL EI V ++ EP GW+ +PL                     S+   LR FFLQ+ ++AMHQNGRDTH+RQ KIY PR        ++ V +D       T+PE TT + A FS +R
Sbjct:   12 REVGDDAMWSLSSAKPGNGVDQLRDDNMDTYWQSDGVQPHLINIQFARKMVIKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWISIPLHADEV----------------SEQAPLRTFFLQVVVLAMHQNGRDTHIRQVKIYAPR--------ETNV-LD------WTIPEATTPQFAAFSCIR 178
The following BLAST results are available for this feature:
BLAST of NO01G04770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29413.12.300e-8275.37Anaphase-promoting complex, subunit 10/DOC domain ... [more]
XP_009033514.12.200e-5655.83hypothetical protein AURANDRAFT_20412 [Aureococcus... [more]
XP_008614534.14.100e-5555.00anaphase-promoting complex subunit 10 [Saprolegnia... [more]
XP_012200382.17.100e-5554.50hypothetical protein SPRG_05703 [Saprolegnia paras... [more]
CBJ26599.11.200e-5462.89Putative subunit of the Anaphase Promoting Complex... [more]
OQR82974.11.200e-5453.50anaphase-promoting complex subunit 10 [Achlya hypo... [more]
OQS04911.12.700e-5453.73anaphase-promoting complex subunit 10 [Thraustothe... [more]
OWY94262.12.300e-5354.50Anaphase-promoting complex subunit 10 [Phytophthor... [more]
XP_008902991.15.100e-5354.55anaphase-promoting complex subunit 10, variant 1 [... [more]
XP_002897129.15.100e-5354.04anaphase-promoting complex subunit 10 [Phytophthor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007788NSK007788Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04770.1NO01G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577502gene_502Nannochloropsis oceanica (N. oceanica CCMP1779)gene
APC10gene1222Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04770.1NO01G04770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04770 ID=NO01G04770|Name=NO01G04770|organism=Nannochloropsis oceanica|type=gene|length=675bp
ATGGATGCTGCATCGACAGCTGAGGCTAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCAAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATAGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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protein sequence of NO01G04770.1

>NO01G04770.1-protein ID=NO01G04770.1-protein|Name=NO01G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDAASTAEASTSTSTTTAALISTKELREIGHEAVWSLSTAKPGNGVEQIR
DDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISM
KAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGES
QGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGID
RDLGGVCTVPEFTTSELAQFSTVR*
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Synonyms
Publications